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Sequence, Chains, Asymmetric and Biological Units

Title TCR-PEPTIDE SPECIFICITY OVERRIDES AFFINITY ENHANCING TCR-MHC INTERACTIONS
Keywords SURFACE PLASMON RESONANCE (SPR); BIACORETM; PEPTIDE-MAJOR HISTOCOMPATIBILITY COMPLEX (PMHC): T-CELL RECEPTOR (TCR), T HIGH AFFINITY TCR, TWO-STEP BINDING, ADOPTIVE THERAPY, IMMUNOGLOBULIN, ADAPTIVE IMMUNE RESPONSE, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4MNQ     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 276 2254 0
2  Protein   BETA-2-MICROGLOBULIN  B 100 837 0
3  Protein   TELOMERASE REVERSE TRANSCRIPTASE  C 9 82 0
4  Protein   UNCHARACTERIZED PROTEIN, T-CELL RECEPTOR, SP3.4 A CHAIN  D 200 1565 0
5  Protein   V_SEGMENT TRANSLATION PRODUCT, T-CELL RECEPTOR BE C REGION  E 240 1911 0
6  Ligand    A 2 0 10
7  Ligand   V_SEGMENT TRANSLATION PRODUCT, T-CELL RECEPTOR BE C REGION  E 1 0 4
8 Water     21 0 21
total       849 6649 35

Proteins
Unit 1 GLY1 SER2 HIS3 SER4 MET5 ARG6 TYR7 PHE8 PHE9 THR10 SER11 VAL12 SER13 ARG14 PRO15 GLY16 ARG17 GLY18 GLU19 PRO20 ARG21 PHE22 ILE23 ALA24 VAL25 GLY26 TYR27 VAL28 ASP29 ASP30 THR31 GLN32 PHE33 VAL34 ARG35 PHE36 ASP37 SER38 ASP39 ALA40 ALA41 SER42 GLN43 ARG44 MET45 GLU46 PRO47 ARG48 ALA49 PRO50 TRP51 ILE52 GLU53 GLN54 GLU55 GLY56 PRO57 GLU58 TYR59 TRP60 ASP61 GLY62 GLU63 THR64 ARG65 LYS66 VAL67 LYS68 ALA69 HIS70 SER71 GLN72 THR73 HIS74 ARG75 VAL76 ASP77 LEU78 GLY79 THR80 LEU81 ARG82 GLY83 TYR84 TYR85 ASN86 GLN87 SER88 GLU89 ALA90 GLY91 SER92 HIS93 THR94 VAL95 GLN96 ARG97 MET98 TYR99 GLY100 CYS101 ASP102 VAL103 GLY104 SER105 ASP106 TRP107 ARG108 PHE109 LEU110 ARG111 GLY112 TYR113 HIS114 GLN115 TYR116 ALA117 TYR118 ASP119 GLY120 LYS121 ASP122 TYR123 ILE124 ALA125 LEU126 LYS127 GLU128 ASP129 LEU130 ARG131 SER132 TRP133 THR134 ALA135 ALA136 ASP137 MET138 ALA139 ALA140 GLN141 THR142 THR143 LYS144 HIS145 LYS146 TRP147 GLU148 ALA149 ALA150 HIS151 VAL152 ALA153 GLU154 GLN155 LEU156 ARG157 ALA158 TYR159 LEU160 GLU161 GLY162 THR163 CYS164 VAL165 GLU166 TRP167 LEU168 ARG169 ARG170 TYR171 LEU172 GLU173 ASN174 GLY175 LYS176 GLU177 THR178 LEU179 GLN180 ARG181 THR182 ASP183 ALA184 PRO185 LYS186 THR187 HIS188 MET189 THR190 HIS191 HIS192 ALA193 VAL194 SER195 ASP196 HIS197 GLU198 ALA199 THR200 LEU201 ARG202 CYS203 TRP204 ALA205 LEU206 SER207 PHE208 TYR209 PRO210 ALA211 GLU212 ILE213 THR214 LEU215 THR216 TRP217 GLN218 ARG219 ASP220 GLY221 GLU222 ASP223 GLN224 THR225 GLN226 ASP227 THR228 GLU229 LEU230 VAL231 GLU232 THR233 ARG234 PRO235 ALA236 GLY237 ASP238 GLY239 THR240 PHE241 GLN242 LYS243 TRP244 ALA245 ALA246 VAL247 VAL248 VAL249 PRO250 SER251 GLY252 GLN253 GLU254 GLN255 ARG256 TYR257 THR258 CYS259 HIS260 VAL261 GLN262 HIS263 GLU264 GLY265 LEU266 PRO267 LYS268 PRO269 LEU270 THR271 LEU272 ARG273 TRP274 GLU275 PRO276
Unit 2 MET0 ILE1 GLN2 ARG3 THR4 PRO5 LYS6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 ALA15 GLU16 ASN17 GLY18 LYS19 SER20 ASN21 PHE22 LEU23 ASN24 CYS25 TYR26 VAL27 SER28 GLY29 PHE30 HIS31 PRO32 SER33 ASP34 ILE35 GLU36 VAL37 ASP38 LEU39 LEU40 LYS41 ASN42 GLY43 GLU44 ARG45 ILE46 GLU47 LYS48 VAL49 GLU50 HIS51 SER52 ASP53 LEU54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 LEU64 LEU65 TYR66 TYR67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 LYS75 ASP76 GLU77 TYR78 ALA79 CYS80 ARG81 VAL82 ASN83 HIS84 VAL85 THR86 LEU87 SER88 GLN89 PRO90 LYS91 ILE92 VAL93 LYS94 TRP95 ASP96 ARG97 ASP98 MET99
Unit 3 ILE1 LEU2 ALA3 LYS4 PHE5 LEU6 HIS7 TRP8 LEU9
Unit 4 ILE2 GLN3 VAL4 GLU5 GLN6 SER7 PRO8 PRO9 ASP10 LEU11 ILE12 LEU13 GLN14 GLU15 GLY16 ALA17 ASN18 SER19 THR20 LEU21 ARG22 CYS23 ASN24 PHE25 SER26 ASP27 SER28 VAL29 ASN30 ASN31 LEU32 TRP33 TRP34 PHE35 HIS36 GLN37 ASN38 PRO39 TRP40 GLY41 GLN42 LEU43 ILE44 ASN45 LEU46 PHE47 TYR48 ILE49 PRO50 SER51 GLY52 THR53 LYS54 GLN55 ASN56 GLY57 ARG58 LEU59 SER60 ALA61 THR62 THR63 VAL64 ALA65 THR66 GLU67 ARG68 TYR69 SER70 LEU71 LEU72 TYR73 ILE74 SER75 SER76 SER77 GLN78 THR79 THR80 ASP81 SER82 GLY83 VAL84 TYR85 PHE86 CYS87 ALA88 VAL89 ASP90 SER91 ALA92 THR93 ALA94 LEU95 PRO96 TYR97 GLY98 TYR99 ILE100 PHE101 GLY102 THR103 GLY104 THR105 ARG106 LEU107 LYS108 VAL109 LEU110 ALA111 ASN112 ILE113 GLN114 ASN115 PRO116 ASP117 PRO118 ALA119 VAL120 TYR121 GLN122 LEU123 ARG124 ASP125 SER126 LYS127 SER128 SER129 ASP130 LYS131 SER132 VAL133 CYS134 LEU135 PHE136 THR137 ASP138 PHE139 ASP140 SER141 GLN142 THR143 ASN144 VAL145 SER146 GLN147 SER148 LYS149 ASP150 SER151 ASP152 VAL153 TYR154 ILE155 THR156 ASP157 LYS158 CYS159 VAL160 LEU161 ASP162 MET163 ARG164 SER165 MET166 ASP167 PHE168 LYS169 SER170 ASN171 SER172 ALA173 VAL174 ALA175 TRP176 SER177 ASN178 LYS179 SER180 ASP181 PHE182 ALA183 CYS184 ALA185 ASN186 ALA187 PHE188 ASN189 ASN190 SER191 ILE192 ILE193 PRO194 GLU195 ASP196 THR197 PHE198 PHE199 PRO200 SER201
Unit 5 ALA2 GLY3 VAL4 THR5 GLN6 THR7 PRO8 LYS9 PHE10 GLN11 VAL12 LEU13 LYS14 THR15 GLY16 GLN17 SER18 MET19 THR20 LEU21 GLN22 CYS23 ALA24 GLN25 ASP26 MET27 ASN28 HIS29 GLU30 TYR31 MET32 SER33 TRP34 TYR35 ARG36 GLN37 ASP38 PRO39 GLY40 MET41 GLY42 LEU43 ARG44 LEU45 ILE46 HIS47 TYR48 SER49 ILE50 HIS51 PRO52 GLU53 TYR54 THR55 ASP56 GLN57 GLY58 GLU59 VAL60 PRO61 ASN62 GLY63 TYR64 ASN65 VAL66 SER67 ARG68 SER69 THR70 THR71 GLU72 ASP73 PHE74 PRO75 LEU76 ARG77 LEU78 LEU79 SER80 ALA81 ALA82 PRO83 SER84 GLN85 THR86 SER87 VAL88 TYR89 PHE90 CYS91 ALA92 SER93 SER94 TYR95 GLN96 GLY97 THR98 GLU99 ALA100 PHE101 PHE102 GLY103 GLN104 GLY105 THR106 ARG107 LEU108 THR109 VAL110 VAL111 GLU112 ASP113 LEU114 ASN115 LYS116 VAL117 PHE118 PRO119 PRO120 GLU121 VAL122 ALA123 VAL124 PHE125 GLU126 PRO127 SER128 GLU129 ALA130 GLU131 ILE132 SER133 HIS134 THR135 GLN136 LYS137 ALA138 THR139 LEU140 VAL141 CYS142 LEU143 ALA144 THR145 GLY146 PHE147 TYR148 PRO149 ASP150 HIS151 VAL152 GLU153 LEU154 SER155 TRP156 TRP157 VAL158 ASN159 GLY160 LYS161 GLU162 VAL163 HIS164 SER165 GLY166 VAL167 CYS168 THR169 ASP170 PRO171 GLN172 PRO173 LEU174 LYS175 GLU176 GLN177 PRO178 ALA179 LEU180 ASN181 ASP182 SER183 ARG184 TYR185 ALA186 LEU187 SER188 SER189 ARG190 LEU191 ARG192 VAL193 SER194 ALA195 THR196 PHE197 TRP198 GLN199 ASP200 PRO201 ARG202 ASN203 HIS204 PHE205 ARG206 CYS207 GLN208 VAL209 GLN210 PHE211 TYR212 GLY213 LEU214 SER215 GLU216 ASN217 ASP218 GLU219 TRP220 THR221 GLN222 ASP223 ARG224 ALA225 LYS226 PRO227 VAL228 THR229 GLN230 ILE231 VAL232 SER233 ALA234 GLU235 ALA236 TRP237 GLY238 ARG239 ALA240 ASP241

Ligands
Unit 6 GOL301 EDO302
Unit 7 EDO301

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany