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Sequence, Chains, Asymmetric and Biological Units

Title INTEGRIN ALPHAVBETA3 ECTODOMAIN BOUND TO AN ANTAGONISTIC TEN OF FIBRONECTIN
Keywords INTEGRIN, A DOMAIN, HYBRID DOMAIN, PSI, EGF REPEATS, BETA TA THIGH, BETA PROPELLER, RGD MOTIF, FIBRONECTIN, VITRONECTIN, ADHESION
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4MMZ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   INTEGRIN ALPHA-V  A 920 7163 0
2  Protein   INTEGRIN BETA-3  B 690 5294 0
3  Protein   FIBRONECTIN  C 91 690 0
4  Ligand    D 2 0 28
5  Ligand    E 6 0 72
6  Ligand    F 2 0 28
7  Ligand    G 2 0 28
8  Ligand    H 2 0 28
9  Ligand    I 3 0 39
10  Ligand   INTEGRIN ALPHA-V  A 12 0 82
11  Ligand   INTEGRIN BETA-3  B 8 0 34
12  Ligand   FIBRONECTIN  C 1 0 6
13 Water     9 0 9
total       1748 13147 354
Proteins
Unit 1 PHE1 ASN2 LEU3 ASP4 VAL5 ASP6 SER7 PRO8 ALA9 GLU10 TYR11 SER12 GLY13 PRO14 GLU15 GLY16 SER17 TYR18 PHE19 GLY20 PHE21 ALA22 VAL23 ASP24 PHE25 PHE26 VAL27 PRO28 SER29 ALA30 SER31 SER32 ARG33 MET34 PHE35 LEU36 LEU37 VAL38 GLY39 ALA40 PRO41 LYS42 ALA43 ASN44 THR45 THR46 GLN47 PRO48 GLY49 ILE50 VAL51 GLU52 GLY53 GLY54 GLN55 VAL56 LEU57 LYS58 CYS59 ASP60 TRP61 SER62 SER63 THR64 ARG65 ARG66 CYS67 GLN68 PRO69 ILE70 GLU71 PHE72 ASP73 ALA74 THR75 GLY76 ASN77 ARG78 ASP79 TYR80 ALA81 LYS82 ASP83 ASP84 PRO85 LEU86 GLU87 PHE88 LYS89 SER90 HIS91 GLN92 TRP93 PHE94 GLY95 ALA96 SER97 VAL98 ARG99 SER100 LYS101 GLN102 ASP103 LYS104 ILE105 LEU106 ALA107 CYS108 ALA109 PRO110 LEU111 TYR112 HIS113 TRP114 ARG115 THR116 GLU117 MET118 LYS119 GLN120 GLU121 ARG122 GLU123 PRO124 VAL125 GLY126 THR127 CYS128 PHE129 LEU130 GLN131 ASP132 GLY133 THR134 LYS135 THR136 VAL137 GLU138 TYR139 ALA140 PRO141 CYS142 ARG143 SER144 GLN145 ASP146 ILE147 ASP148 ALA149 ASP150 GLY151 GLN152 GLY153 PHE154 CYS155 GLN156 GLY157 GLY158 PHE159 SER160 ILE161 ASP162 PHE163 THR164 LYS165 ALA166 ASP167 ARG168 VAL169 LEU170 LEU171 GLY172 GLY173 PRO174 GLY175 SER176 PHE177 TYR178 TRP179 GLN180 GLY181 GLN182 LEU183 ILE184 SER185 ASP186 GLN187 VAL188 ALA189 GLU190 ILE191 VAL192 SER193 LYS194 TYR195 ASP196 PRO197 ASN198 VAL199 TYR200 SER201 ILE202 LYS203 TYR204 ASN205 ASN206 GLN207 LEU208 ALA209 THR210 ARG211 THR212 ALA213 GLN214 ALA215 ILE216 PHE217 ASP218 ASP219 SER220 TYR221 LEU222 GLY223 TYR224 SER225 VAL226 ALA227 VAL228 GLY229 ASP230 PHE231 ASN232 GLY233 ASP234 GLY235 ILE236 ASP237 ASP238 PHE239 VAL240 SER241 GLY242 VAL243 PRO244 ARG245 ALA246 ALA247 ARG248 THR249 LEU250 GLY251 MET252 VAL253 TYR254 ILE255 TYR256 ASP257 GLY258 LYS259 ASN260 MET261 SER262 SER263 LEU264 TYR265 ASN266 PHE267 THR268 GLY269 GLU270 GLN271 MET272 ALA273 ALA274 TYR275 PHE276 GLY277 PHE278 SER279 VAL280 ALA281 ALA282 THR283 ASP284 ILE285 ASN286 GLY287 ASP288 ASP289 TYR290 ALA291 ASP292 VAL293 PHE294 ILE295 GLY296 ALA297 PRO298 LEU299 PHE300 MET301 ASP302 ARG303 GLY304 SER305 ASP306 GLY307 LYS308 LEU309 GLN310 GLU311 VAL312 GLY313 GLN314 VAL315 SER316 VAL317 SER318 LEU319 GLN320 ARG321 ALA322 SER323 GLY324 ASP325 PHE326 GLN327 THR328 THR329 LYS330 LEU331 ASN332 GLY333 PHE334 GLU335 VAL336 PHE337 ALA338 ARG339 PHE340 GLY341 SER342 ALA343 ILE344 ALA345 PRO346 LEU347 GLY348 ASP349 LEU350 ASP351 GLN352 ASP353 GLY354 PHE355 ASN356 ASP357 ILE358 ALA359 ILE360 ALA361 ALA362 PRO363 TYR364 GLY365 GLY366 GLU367 ASP368 LYS369 LYS370 GLY371 ILE372 VAL373 TYR374 ILE375 PHE376 ASN377 GLY378 ARG379 SER380 THR381 GLY382 LEU383 ASN384 ALA385 VAL386 PRO387 SER388 GLN389 ILE390 LEU391 GLU392 GLY393 GLN394 TRP395 ALA396 ALA397 ARG398 SER399 MET400 PRO401 PRO402 SER403 PHE404 GLY405 TYR406 SER407 MET408 LYS409 GLY410 ALA411 THR412 ASP413 ILE414 ASP415 LYS416 ASN417 GLY418 TYR419 PRO420 ASP421 LEU422 ILE423 VAL424 GLY425 ALA426 PHE427 GLY428 VAL429 ASP430 ARG431 ALA432 ILE433 LEU434 TYR435 ARG436 ALA437 ARG438 PRO439 VAL440 ILE441 THR442 VAL443 ASN444 ALA445 GLY446 LEU447 GLU448 VAL449 TYR450 PRO451 SER452 ILE453 LEU454 ASN455 GLN456 ASP457 ASN458 LYS459 THR460 CYS461 SER462 LEU463 PRO464 GLY465 THR466 ALA467 LEU468 LYS469 VAL470 SER471 CYS472 PHE473 ASN474 VAL475 ARG476 PHE477 CYS478 LEU479 LYS480 ALA481 ASP482 GLY483 LYS484 GLY485 VAL486 LEU487 PRO488 ARG489 LYS490 LEU491 ASN492 PHE493 GLN494 VAL495 GLU496 LEU497 LEU498 LEU499 ASP500 LYS501 LEU502 LYS503 GLN504 LYS505 GLY506 ALA507 ILE508 ARG509 ARG510 ALA511 LEU512 PHE513 LEU514 TYR515 SER516 ARG517 SER518 PRO519 SER520 HIS521 SER522 LYS523 ASN524 MET525 THR526 ILE527 SER528 ARG529 GLY530 GLY531 LEU532 MET533 GLN534 CYS535 GLU536 GLU537 LEU538 ILE539 ALA540 TYR541 LEU542 ARG543 ASP544 GLU545 SER546 GLU547 PHE548 ARG549 ASP550 LYS551 LEU552 THR553 PRO554 ILE555 THR556 ILE557 PHE558 MET559 GLU560 TYR561 ARG562 LEU563 ASP564 TYR565 ARG566 THR567 ALA568 ALA569 ASP570 THR571 THR572 GLY573 LEU574 GLN575 PRO576 ILE577 LEU578 ASN579 GLN580 PHE581 THR582 PRO583 ALA584 ASN585 ILE586 SER587 ARG588 GLN589 ALA590 HIS591 ILE592 LEU593 LEU594 ASP595 CYS596 GLY597 GLU598 ASP599 ASN600 VAL601 CYS602 LYS603 PRO604 LYS605 LEU606 GLU607 VAL608 SER609 VAL610 ASP611 SER612 ASP613 GLN614 LYS615 LYS616 ILE617 TYR618 ILE619 GLY620 ASP621 ASP622 ASN623 PRO624 LEU625 THR626 LEU627 ILE628 VAL629 LYS630 ALA631 GLN632 ASN633 GLN634 GLY635 GLU636 GLY637 ALA638 TYR639 GLU640 ALA641 GLU642 LEU643 ILE644 VAL645 SER646 ILE647 PRO648 LEU649 GLN650 ALA651 ASP652 PHE653 ILE654 GLY655 VAL656 VAL657 ARG658 ASN659 ASN660 GLU661 ALA662 LEU663 ALA664 ARG665 LEU666 SER667 CYS668 ALA669 PHE670 LYS671 THR672 GLU673 ASN674 GLN675 THR676 ARG677 GLN678 VAL679 VAL680 CYS681 ASP682 LEU683 GLY684 ASN685 PRO686 MET687 LYS688 ALA689 GLY690 THR691 GLN692 LEU693 LEU694 ALA695 GLY696 LEU697 ARG698 PHE699 SER700 VAL701 HIS702 GLN703 GLN704 SER705 GLU706 MET707 ASP708 THR709 SER710 VAL711 LYS712 PHE713 ASP714 LEU715 GLN716 ILE717 GLN718 SER719 SER720 ASN721 LEU722 PHE723 ASP724 LYS725 VAL726 SER727 PRO728 VAL729 VAL730 SER731 HIS732 LYS733 VAL734 ASP735 LEU736 ALA737 VAL738 LEU739 ALA740 ALA741 VAL742 GLU743 ILE744 ARG745 GLY746 VAL747 SER748 SER749 PRO750 ASP751 HIS752 VAL753 PHE754 LEU755 PRO756 ILE757 PRO758 ASN759 TRP760 GLU761 HIS762 LYS763 GLU764 ASN765 PRO766 GLU767 THR768 GLU769 GLU770 ASP771 VAL772 GLY773 PRO774 VAL775 VAL776 GLN777 HIS778 ILE779 TYR780 GLU781 LEU782 ARG783 ASN784 ASN785 GLY786 PRO787 SER788 SER789 PHE790 SER791 LYS792 ALA793 MET794 LEU795 HIS796 LEU797 GLN798 TRP799 PRO800 TYR801 LYS802 TYR803 ASN804 ASN805 ASN806 THR807 LEU808 LEU809 TYR810 ILE811 LEU812 HIS813 TYR814 ASP815 ILE816 ASP817 GLY818 PRO819 MET820 ASN821 CYS822 THR823 SER824 ASP825 MET826 GLU827 ILE828 ASN829 PRO830 LEU831 ARG832 ILE833 LYS834 ILE835 HIS870 THR871 LEU872 GLY873 CYS874 GLY875 VAL876 ALA877 GLN878 CYS879 LEU880 LYS881 ILE882 VAL883 CYS884 GLN885 VAL886 GLY887 ARG888 LEU889 ASP890 ARG891 GLY892 LYS893 SER894 ALA895 ILE896 LEU897 TYR898 VAL899 LYS900 SER901 LEU902 LEU903 TRP904 THR905 GLU906 THR907 PHE908 MET909 ASN910 LYS911 GLU912 ASN913 GLN914 ASN915 HIS916 SER917 TYR918 SER919 LEU920 LYS921 SER922 SER923 ALA924 SER925 PHE926 ASN927 VAL928 ILE929 GLU930 PHE931 PRO932 TYR933 LYS934 ASN935 LEU936 PRO937 ILE938 GLU939 ASP940 ILE941 THR942 ASN943 SER944 THR945 LEU946 VAL947 THR948 THR949 ASN950 VAL951 THR952 TRP953 GLY954
Unit 2 GLY1 PRO2 ASN3 ILE4 CYS5 THR6 THR7 ARG8 GLY9 VAL10 SER11 SER12 CYS13 GLN14 GLN15 CYS16 LEU17 ALA18 VAL19 SER20 PRO21 MET22 CYS23 ALA24 TRP25 CYS26 SER27 ASP28 GLU29 ALA30 LEU31 PRO32 LEU33 GLY34 SER35 PRO36 ARG37 CYS38 ASP39 LEU40 LYS41 GLU42 ASN43 LEU44 LEU45 LYS46 ASP47 ASN48 CYS49 ALA50 PRO51 GLU52 SER53 ILE54 GLU55 PHE56 PRO57 VAL58 SER59 GLU60 ALA61 ARG62 VAL63 LEU64 GLU65 ASP66 ARG67 PRO68 LEU69 SER70 ASP71 LYS72 GLY73 SER74 GLY75 ASP76 SER77 SER78 GLN79 VAL80 THR81 GLN82 VAL83 SER84 PRO85 GLN86 ARG87 ILE88 ALA89 LEU90 ARG91 LEU92 ARG93 PRO94 ASP95 ASP96 SER97 LYS98 ASN99 PHE100 SER101 ILE102 GLN103 VAL104 ARG105 GLN106 VAL107 GLU108 ASP109 TYR110 PRO111 VAL112 ASP113 ILE114 TYR115 TYR116 LEU117 MET118 ASP119 LEU120 SER121 TYR122 SER123 MET124 LYS125 ASP126 ASP127 LEU128 TRP129 SER130 ILE131 GLN132 ASN133 LEU134 GLY135 THR136 LYS137 LEU138 ALA139 THR140 GLN141 MET142 ARG143 LYS144 LEU145 THR146 SER147 ASN148 LEU149 ARG150 ILE151 GLY152 PHE153 GLY154 ALA155 PHE156 VAL157 ASP158 LYS159 PRO160 VAL161 SER162 PRO163 TYR164 MET165 TYR166 ILE167 SER168 PRO169 PRO170 GLU171 ALA172 LEU173 GLU174 ASN175 PRO176 CYS177 TYR178 ASP179 MET180 LYS181 THR182 THR183 CYS184 LEU185 PRO186 MET187 PHE188 GLY189 TYR190 LYS191 HIS192 VAL193 LEU194 THR195 LEU196 THR197 ASP198 GLN199 VAL200 THR201 ARG202 PHE203 ASN204 GLU205 GLU206 VAL207 LYS208 LYS209 GLN210 SER211 VAL212 SER213 ARG214 ASN215 ARG216 ASP217 ALA218 PRO219 GLU220 GLY221 GLY222 PHE223 ASP224 ALA225 ILE226 MET227 GLN228 ALA229 THR230 VAL231 CYS232 ASP233 GLU234 LYS235 ILE236 GLY237 TRP238 ARG239 ASN240 ASP241 ALA242 SER243 HIS244 LEU245 LEU246 VAL247 PHE248 THR249 THR250 ASP251 ALA252 LYS253 THR254 HIS255 ILE256 ALA257 LEU258 ASP259 GLY260 ARG261 LEU262 ALA263 GLY264 ILE265 VAL266 GLN267 PRO268 ASN269 ASP270 GLY271 GLN272 CYS273 HIS274 VAL275 GLY276 SER277 ASP278 ASN279 HIS280 TYR281 SER282 ALA283 SER284 THR285 THR286 MET287 ASP288 TYR289 PRO290 SER291 LEU292 GLY293 LEU294 MET295 THR296 GLU297 LYS298 LEU299 SER300 GLN301 LYS302 ASN303 ILE304 ASN305 LEU306 ILE307 PHE308 ALA309 VAL310 THR311 GLU312 ASN313 VAL314 VAL315 ASN316 LEU317 TYR318 GLN319 ASN320 TYR321 SER322 GLU323 LEU324 ILE325 PRO326 GLY327 THR328 THR329 VAL330 GLY331 VAL332 LEU333 SER334 MET335 ASP336 SER337 SER338 ASN339 VAL340 LEU341 GLN342 LEU343 ILE344 VAL345 ASP346 ALA347 TYR348 GLY349 LYS350 ILE351 ARG352 SER353 LYS354 VAL355 GLU356 LEU357 GLU358 VAL359 ARG360 ASP361 LEU362 PRO363 GLU364 GLU365 LEU366 SER367 LEU368 SER369 PHE370 ASN371 ALA372 THR373 CYS374 LEU375 ASN376 ASN377 GLU378 VAL379 ILE380 PRO381 GLY382 LEU383 LYS384 SER385 CYS386 MET387 GLY388 LEU389 LYS390 ILE391 GLY392 ASP393 THR394 VAL395 SER396 PHE397 SER398 ILE399 GLU400 ALA401 LYS402 VAL403 ARG404 GLY405 CYS406 PRO407 GLN408 GLU409 LYS410 GLU411 LYS412 SER413 PHE414 THR415 ILE416 LYS417 PRO418 VAL419 GLY420 PHE421 LYS422 ASP423 SER424 LEU425 ILE426 VAL427 GLN428 VAL429 THR430 PHE431 ASP432 CYS433 ASP434 CYS435 ALA436 CYS437 GLN438 ALA439 GLN440 ALA441 GLU442 PRO443 ASN444 SER445 HIS446 ARG447 CYS448 ASN449 ASN450 GLY451 ASN452 GLY453 THR454 PHE455 GLU456 CYS457 GLY458 VAL459 CYS460 ARG461 CYS462 GLY463 PRO464 GLY465 TRP466 LEU467 GLY468 SER469 GLN470 CYS471 GLU472 CYS473 SER474 GLU475 GLU476 ASP477 TYR478 ARG479 PRO480 SER481 GLN482 GLN483 ASP484 GLU485 CYS486 SER487 PRO488 ARG489 GLU490 GLY491 GLN492 PRO493 VAL494 CYS495 SER496 GLN497 ARG498 GLY499 GLU500 CYS501 LEU502 CYS503 GLY504 GLN505 CYS506 VAL507 CYS508 HIS509 SER510 SER511 ASP512 PHE513 GLY514 LYS515 ILE516 THR517 GLY518 LYS519 TYR520 CYS521 GLU522 CYS523 ASP524 ASP525 PHE526 SER527 CYS528 VAL529 ARG530 TYR531 LYS532 GLY533 GLU534 MET535 CYS536 SER537 GLY538 HIS539 GLY540 GLN541 CYS542 SER543 CYS544 GLY545 ASP546 CYS547 LEU548 CYS549 ASP550 SER551 ASP552 TRP553 THR554 GLY555 TYR556 TYR557 CYS558 ASN559 CYS560 THR561 THR562 ARG563 THR564 ASP565 THR566 CYS567 MET568 SER569 SER570 ASN571 GLY572 LEU573 LEU574 CYS575 SER576 GLY577 ARG578 GLY579 LYS580 CYS581 GLU582 CYS583 GLY584 SER585 CYS586 VAL587 CYS588 ILE589 GLN590 PRO591 GLY592 SER593 TYR594 GLY595 ASP596 THR597 CYS598 GLU599 LYS600 CYS601 PRO602 THR603 CYS604 PRO605 ASP606 ALA607 CYS608 THR609 PHE610 LYS611 LYS612 GLU613 CYS614 VAL615 GLU616 CYS617 LYS618 LYS619 PHE620 ASP621 ARG622 GLY623 ALA624 LEU625 HIS626 ASP627 GLU628 ASN629 THR630 CYS631 ASN632 ARG633 TYR634 CYS635 ARG636 ASP637 GLU638 ILE639 GLU640 SER641 VAL642 LYS643 GLU644 LEU645 LYS646 ASP647 THR648 GLY649 LYS650 ASP651 ALA652 VAL653 ASN654 CYS655 THR656 TYR657 LYS658 ASN659 GLU660 ASP661 ASP662 CYS663 VAL664 VAL665 ARG666 PHE667 GLN668 TYR669 TYR670 GLU671 ASP672 SER673 SER674 GLY675 LYS676 SER677 ILE678 LEU679 TYR680 VAL681 VAL682 GLU683 GLU684 PRO685 GLU686 CYS687 PRO688 LYS689 GLY690
Unit 3 SER1417 ASP1418 VAL1419 PRO1420 ARG1421 ASP1422 LEU1423 GLU1424 VAL1425 VAL1426 ALA1427 ALA1428 THR1429 PRO1430 THR1431 SER1432 LEU1433 LEU1434 ILE1435 SER1436 TRP1437 ASP1438 ALA1439 PRO1440 ALA1441 VAL1442 THR1443 VAL1444 ARG1445 TYR1446 TYR1447 ARG1448 ILE1449 THR1450 TYR1451 GLY1452 GLU1453 THR1454 GLY1455 GLY1456 ASN1457 SER1458 PRO1459 VAL1460 GLN1461 GLU1462 PHE1463 THR1464 VAL1465 PRO1466 GLY1467 SER1468 LYS1469 SER1470 THR1471 ALA1472 THR1473 ILE1474 SER1475 GLY1476 LEU1477 LYS1478 PRO1479 GLY1480 VAL1481 ASP1482 TYR1483 THR1484 ILE1485 THR1486 VAL1487 TYR1488 ALA1489 VAL1490 THR1491 PRO1492 ARG1493 GLY1494 ASP1495 TRP1496 ASN1497 GLU1498 GLY1499 SER1500 LYS1501 PRO1502 ILE1503 SER1504 ILE1505 ASN1506 TYR1507
Ligands
Unit 4 NAG1 NAG2
Unit 5 NAG1 NAG2 BMA3 BMA4 MAN5 MAN6
Unit 6 NAG1 NAG2
Unit 7 NAG1 NAG2
Unit 8 NAG1 NAG2
Unit 9 NAG1 NAG2 BMA3
Unit 10 NAG1003 NAG1012 NAG1013 NAG1016 NAG1017 MN1018 MN1019 MN1020 MN1021 MN1022 NA1023 GOL1024
Unit 11 NAG701 NAG702 MN708 MN709 MN710 NA711 CL712 CL713
Unit 12 GOL1601
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany