4MK8 - Sequence, Chains, Asymmetric and Biological Units

• Title: HEPATITIS C VIRUS POLYMERASE NS5B GENOTYPE 1B (BK) IN COMPLE INHIBITOR 4 (N-(4-{2-[3-TERT-BUTYL-2-METHOXY-5-(2-OXO-1,2- DIHYDROPYRIDIN-3-YL)PHENYL]ETHYL}PHENYL)METHANESULFONAMIDE)
• Keywords: POLYMERASE, TRANSFERASE, NS5B, TRANSFERASE-TRANSFERASE INHIB COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4MK8	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	RNA-DIRECTED RNA POLYMERASE	A	557	4340	0
2	Protein	RNA-DIRECTED RNA POLYMERASE	B	557	4340	0
3	Ligand	RNA-DIRECTED RNA POLYMERASE	A	2	0	42
4	Ligand	RNA-DIRECTED RNA POLYMERASE	B	4	0	58
5	Water			634	0	634
total				1754	8680	734

Proteins

Unit 1

HIS 1 MET 2 SER 3 TYR 4 THR 5 TRP 6 THR 7 GLY 8 ALA 9 LEU 10 ILE 11 THR 12 PRO 13 CYS 14 ALA 15 ALA 16 GLU 17 GLU 18 SER 19 LYS 20 LEU 21 PRO 22 ILE 23 ASN 24 ALA 25 LEU 26 SER 27 ASN 28 SER 29 LEU 30 LEU 31 ARG 32 HIS 33 HIS 34 ASN 35 MET 36 VAL 37 TYR 38 ALA 39 THR 40 THR 41 SER 42 ARG 43 SER 44 ALA 45 GLY 46 LEU 47 ARG 48 GLN 49 LYS 50 LYS 51 VAL 52 THR 53 PHE 54 ASP 55 ARG 56 LEU 57 GLN 58 VAL 59 LEU 60 ASP 61 ASP 62 HIS 63 TYR 64 ARG 65 ASP 66 VAL 67 LEU 68 LYS 69 GLU 70 MET 71 LYS 72 ALA 73 LYS 74 ALA 75 SER 76 THR 77 VAL 78 LYS 79 ALA 80 LYS 81 LEU 82 LEU 83 SER 84 VAL 85 GLU 86 GLU 87 ALA 88 CYS 89 LYS 90 LEU 91 THR 92 PRO 93 PRO 94 HIS 95 SER 96 ALA 97 LYS 98 SER 99 LYS 100 PHE 101 GLY 102 TYR 103 GLY 104 ALA 105 LYS 106 ASP 107 VAL 108 ARG 109 ASN 110 LEU 111 SER 112 SER 113 LYS 114 ALA 115 VAL 116 ASN 117 HIS 118 ILE 119 HIS 120 SER 121 VAL 122 TRP 123 LYS 124 ASP 125 LEU 126 LEU 127 GLU 128 ASP 129 THR 130 VAL 131 THR 132 PRO 133 ILE 134 ASP 135 THR 136 THR 137 ILE 138 MET 139 ALA 140 LYS 141 ASN 142 GLU 143 VAL 144 PHE 145 CYS 146 VAL 147 GLN 148 ARG 154 LYS 155 PRO 156 ALA 157 ARG 158 LEU 159 ILE 160 VAL 161 PHE 162 PRO 163 ASP 164 LEU 165 GLY 166 VAL 167 ARG 168 VAL 169 CYS 170 GLU 171 LYS 172 MET 173 ALA 174 LEU 175 TYR 176 ASP 177 VAL 178 VAL 179 SER 180 THR 181 LEU 182 PRO 183 GLN 184 VAL 185 VAL 186 MET 187 GLY 188 SER 189 SER 190 TYR 191 GLY 192 PHE 193 GLN 194 TYR 195 SER 196 PRO 197 GLY 198 GLN 199 ARG 200 VAL 201 GLU 202 PHE 203 LEU 204 VAL 205 ASN 206 THR 207 TRP 208 LYS 209 SER 210 LYS 211 LYS 212 ASN 213 PRO 214 MET 215 GLY 216 PHE 217 SER 218 TYR 219 ASP 220 THR 221 ARG 222 CYS 223 PHE 224 ASP 225 SER 226 THR 227 VAL 228 THR 229 GLU 230 ASN 231 ASP 232 ILE 233 ARG 234 VAL 235 GLU 236 GLU 237 SER 238 ILE 239 TYR 240 GLN 241 CYS 242 CYS 243 ASP 244 LEU 245 ALA 246 PRO 247 GLU 248 ALA 249 ARG 250 GLN 251 ALA 252 ILE 253 LYS 254 SER 255 LEU 256 THR 257 GLU 258 ARG 259 LEU 260 TYR 261 ILE 262 GLY 263 GLY 264 PRO 265 LEU 266 THR 267 ASN 268 SER 269 LYS 270 GLY 271 GLN 272 ASN 273 CYS 274 GLY 275 TYR 276 ARG 277 ARG 278 CYS 279 ARG 280 ALA 281 SER 282 GLY 283 VAL 284 LEU 285 THR 286 THR 287 SER 288 CYS 289 GLY 290 ASN 291 THR 292 LEU 293 THR 294 CYS 295 TYR 296 LEU 297 LYS 298 ALA 299 SER 300 ALA 301 ALA 302 CYS 303 ARG 304 ALA 305 ALA 306 LYS 307 LEU 308 GLN 309 ASP 310 CYS 311 THR 312 MET 313 LEU 314 VAL 315 ASN 316 GLY 317 ASP 318 ASP 319 LEU 320 VAL 321 VAL 322 ILE 323 CYS 324 GLU 325 SER 326 ALA 327 GLY 328 THR 329 GLN 330 GLU 331 ASP 332 ALA 333 ALA 334 SER 335 LEU 336 ARG 337 VAL 338 PHE 339 THR 340 GLU 341 ALA 342 MET 343 THR 344 ARG 345 TYR 346 SER 347 ALA 348 PRO 349 PRO 350 GLY 351 ASP 352 PRO 353 PRO 354 GLN 355 PRO 356 GLU 357 TYR 358 ASP 359 LEU 360 GLU 361 LEU 362 ILE 363 THR 364 SER 365 CYS 366 SER 367 SER 368 ASN 369 VAL 370 SER 371 VAL 372 ALA 373 HIS 374 ASP 375 ALA 376 SER 377 GLY 378 LYS 379 ARG 380 VAL 381 TYR 382 TYR 383 LEU 384 THR 385 ARG 386 ASP 387 PRO 388 THR 389 THR 390 PRO 391 LEU 392 ALA 393 ARG 394 ALA 395 ALA 396 TRP 397 GLU 398 THR 399 ALA 400 ARG 401 HIS 402 THR 403 PRO 404 VAL 405 ASN 406 SER 407 TRP 408 LEU 409 GLY 410 ASN 411 ILE 412 ILE 413 MET 414 TYR 415 ALA 416 PRO 417 THR 418 LEU 419 TRP 420 ALA 421 ARG 422 MET 423 ILE 424 LEU 425 MET 426 THR 427 HIS 428 PHE 429 PHE 430 SER 431 ILE 432 LEU 433 LEU 434 ALA 435 GLN 436 GLU 437 GLN 438 LEU 439 GLU 440 LYS 441 ALA 442 LEU 443 ASP 444 CYS 445 GLN 446 ILE 447 TYR 448 GLY 449 ALA 450 CYS 451 TYR 452 SER 453 ILE 454 GLU 455 PRO 456 LEU 457 ASP 458 LEU 459 PRO 460 GLN 461 ILE 462 ILE 463 GLU 464 ARG 465 LEU 466 HIS 467 GLY 468 LEU 469 SER 470 ALA 471 PHE 472 SER 473 LEU 474 HIS 475 SER 476 TYR 477 SER 478 PRO 479 GLY 480 GLU 481 ILE 482 ASN 483 ARG 484 VAL 485 ALA 486 SER 487 CYS 488 LEU 489 ARG 490 LYS 491 LEU 492 GLY 493 VAL 494 PRO 495 PRO 496 LEU 497 ARG 498 VAL 499 TRP 500 ARG 501 HIS 502 ARG 503 ALA 504 ARG 505 SER 506 VAL 507 ARG 508 ALA 509 ARG 510 LEU 511 LEU 512 SER 513 GLN 514 GLY 515 GLY 516 ARG 517 ALA 518 ALA 519 THR 520 CYS 521 GLY 522 LYS 523 TYR 524 LEU 525 PHE 526 ASN 527 TRP 528 ALA 529 VAL 530 LYS 531 THR 532 LYS 533 LEU 534 LYS 535 LEU 536 THR 537 PRO 538 ILE 539 PRO 540 ALA 541 ALA 542 SER 543 ARG 544 LEU 545 ASP 546 LEU 547 SER 548 GLY 549 TRP 550 PHE 551 VAL 552 ALA 553 GLY 554 TYR 555 SER 556 GLY 557 GLY 558 ASP 559 ILE 560 TYR 561 HIS 562

Unit 2

HIS 1 MET 2 SER 3 TYR 4 THR 5 TRP 6 THR 7 GLY 8 ALA 9 LEU 10 ILE 11 THR 12 PRO 13 CYS 14 ALA 15 ALA 16 GLU 17 GLU 18 SER 19 LYS 20 LEU 21 PRO 22 ILE 23 ASN 24 ALA 25 LEU 26 SER 27 ASN 28 SER 29 LEU 30 LEU 31 ARG 32 HIS 33 HIS 34 ASN 35 MET 36 VAL 37 TYR 38 ALA 39 THR 40 THR 41 SER 42 ARG 43 SER 44 ALA 45 GLY 46 LEU 47 ARG 48 GLN 49 LYS 50 LYS 51 VAL 52 THR 53 PHE 54 ASP 55 ARG 56 LEU 57 GLN 58 VAL 59 LEU 60 ASP 61 ASP 62 HIS 63 TYR 64 ARG 65 ASP 66 VAL 67 LEU 68 LYS 69 GLU 70 MET 71 LYS 72 ALA 73 LYS 74 ALA 75 SER 76 THR 77 VAL 78 LYS 79 ALA 80 LYS 81 LEU 82 LEU 83 SER 84 VAL 85 GLU 86 GLU 87 ALA 88 CYS 89 LYS 90 LEU 91 THR 92 PRO 93 PRO 94 HIS 95 SER 96 ALA 97 LYS 98 SER 99 LYS 100 PHE 101 GLY 102 TYR 103 GLY 104 ALA 105 LYS 106 ASP 107 VAL 108 ARG 109 ASN 110 LEU 111 SER 112 SER 113 LYS 114 ALA 115 VAL 116 ASN 117 HIS 118 ILE 119 HIS 120 SER 121 VAL 122 TRP 123 LYS 124 ASP 125 LEU 126 LEU 127 GLU 128 ASP 129 THR 130 VAL 131 THR 132 PRO 133 ILE 134 ASP 135 THR 136 THR 137 ILE 138 MET 139 ALA 140 LYS 141 ASN 142 GLU 143 VAL 144 PHE 145 CYS 146 VAL 147 GLN 148 ARG 154 LYS 155 PRO 156 ALA 157 ARG 158 LEU 159 ILE 160 VAL 161 PHE 162 PRO 163 ASP 164 LEU 165 GLY 166 VAL 167 ARG 168 VAL 169 CYS 170 GLU 171 LYS 172 MET 173 ALA 174 LEU 175 TYR 176 ASP 177 VAL 178 VAL 179 SER 180 THR 181 LEU 182 PRO 183 GLN 184 VAL 185 VAL 186 MET 187 GLY 188 SER 189 SER 190 TYR 191 GLY 192 PHE 193 GLN 194 TYR 195 SER 196 PRO 197 GLY 198 GLN 199 ARG 200 VAL 201 GLU 202 PHE 203 LEU 204 VAL 205 ASN 206 THR 207 TRP 208 LYS 209 SER 210 LYS 211 LYS 212 ASN 213 PRO 214 MET 215 GLY 216 PHE 217 SER 218 TYR 219 ASP 220 THR 221 ARG 222 CYS 223 PHE 224 ASP 225 SER 226 THR 227 VAL 228 THR 229 GLU 230 ASN 231 ASP 232 ILE 233 ARG 234 VAL 235 GLU 236 GLU 237 SER 238 ILE 239 TYR 240 GLN 241 CYS 242 CYS 243 ASP 244 LEU 245 ALA 246 PRO 247 GLU 248 ALA 249 ARG 250 GLN 251 ALA 252 ILE 253 LYS 254 SER 255 LEU 256 THR 257 GLU 258 ARG 259 LEU 260 TYR 261 ILE 262 GLY 263 GLY 264 PRO 265 LEU 266 THR 267 ASN 268 SER 269 LYS 270 GLY 271 GLN 272 ASN 273 CYS 274 GLY 275 TYR 276 ARG 277 ARG 278 CYS 279 ARG 280 ALA 281 SER 282 GLY 283 VAL 284 LEU 285 THR 286 THR 287 SER 288 CYS 289 GLY 290 ASN 291 THR 292 LEU 293 THR 294 CYS 295 TYR 296 LEU 297 LYS 298 ALA 299 SER 300 ALA 301 ALA 302 CYS 303 ARG 304 ALA 305 ALA 306 LYS 307 LEU 308 GLN 309 ASP 310 CYS 311 THR 312 MET 313 LEU 314 VAL 315 ASN 316 GLY 317 ASP 318 ASP 319 LEU 320 VAL 321 VAL 322 ILE 323 CYS 324 GLU 325 SER 326 ALA 327 GLY 328 THR 329 GLN 330 GLU 331 ASP 332 ALA 333 ALA 334 SER 335 LEU 336 ARG 337 VAL 338 PHE 339 THR 340 GLU 341 ALA 342 MET 343 THR 344 ARG 345 TYR 346 SER 347 ALA 348 PRO 349 PRO 350 GLY 351 ASP 352 PRO 353 PRO 354 GLN 355 PRO 356 GLU 357 TYR 358 ASP 359 LEU 360 GLU 361 LEU 362 ILE 363 THR 364 SER 365 CYS 366 SER 367 SER 368 ASN 369 VAL 370 SER 371 VAL 372 ALA 373 HIS 374 ASP 375 ALA 376 SER 377 GLY 378 LYS 379 ARG 380 VAL 381 TYR 382 TYR 383 LEU 384 THR 385 ARG 386 ASP 387 PRO 388 THR 389 THR 390 PRO 391 LEU 392 ALA 393 ARG 394 ALA 395 ALA 396 TRP 397 GLU 398 THR 399 ALA 400 ARG 401 HIS 402 THR 403 PRO 404 VAL 405 ASN 406 SER 407 TRP 408 LEU 409 GLY 410 ASN 411 ILE 412 ILE 413 MET 414 TYR 415 ALA 416 PRO 417 THR 418 LEU 419 TRP 420 ALA 421 ARG 422 MET 423 ILE 424 LEU 425 MET 426 THR 427 HIS 428 PHE 429 PHE 430 SER 431 ILE 432 LEU 433 LEU 434 ALA 435 GLN 436 GLU 437 GLN 438 LEU 439 GLU 440 LYS 441 ALA 442 LEU 443 ASP 444 CYS 445 GLN 446 ILE 447 TYR 448 GLY 449 ALA 450 CYS 451 TYR 452 SER 453 ILE 454 GLU 455 PRO 456 LEU 457 ASP 458 LEU 459 PRO 460 GLN 461 ILE 462 ILE 463 GLU 464 ARG 465 LEU 466 HIS 467 GLY 468 LEU 469 SER 470 ALA 471 PHE 472 SER 473 LEU 474 HIS 475 SER 476 TYR 477 SER 478 PRO 479 GLY 480 GLU 481 ILE 482 ASN 483 ARG 484 VAL 485 ALA 486 SER 487 CYS 488 LEU 489 ARG 490 LYS 491 LEU 492 GLY 493 VAL 494 PRO 495 PRO 496 LEU 497 ARG 498 VAL 499 TRP 500 ARG 501 HIS 502 ARG 503 ALA 504 ARG 505 SER 506 VAL 507 ARG 508 ALA 509 ARG 510 LEU 511 LEU 512 SER 513 GLN 514 GLY 515 GLY 516 ARG 517 ALA 518 ALA 519 THR 520 CYS 521 GLY 522 LYS 523 TYR 524 LEU 525 PHE 526 ASN 527 TRP 528 ALA 529 VAL 530 LYS 531 THR 532 LYS 533 LEU 534 LYS 535 LEU 536 THR 537 PRO 538 ILE 539 PRO 540 ALA 541 ALA 542 SER 543 ARG 544 LEU 545 ASP 546 LEU 547 SER 548 GLY 549 TRP 550 PHE 551 VAL 552 ALA 553 GLY 554 TYR 555 SER 556 GLY 557 GLY 558 ASP 559 ILE 560 TYR 561 HIS 562

Ligands

Unit 3	DMS 601 28Q 602
Unit 4	DMS 601 DMS 602 GOL 603 28Q 604