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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF APO-IDURONIDASE IN THE R3 FORM
Keywords TIM BARREL, BETA SANDWICH, FIBRONECTIN TYPE III, HYDROLYZE I ACIDS FROM THE NON-REDUCING ENDS OF GLYCOSAMINOGLYCAN, INTRACELLULAR, LYSOSOMAL, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4MJ2     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ALPHA-L-IDURONIDASE  A 595 4734 0
2  Protein   ALPHA-L-IDURONIDASE  B 607 4817 0
3  Ligand    C 2 0 28
4  Ligand    D 5 0 61
5  Ligand    E 3 0 39
6  Ligand    F 7 0 83
7  Ligand   ALPHA-L-IDURONIDASE  A 3 0 21
8  Ligand   ALPHA-L-IDURONIDASE  B 10 0 75
9 Water     433 0 433
total       1665 9551 740
Proteins
Unit 1 ALA28 PRO29 HIS30 LEU31 VAL32 GLN33 VAL34 ASP35 ALA36 ALA37 ARG38 ALA39 LEU40 TRP41 PRO42 LEU43 ARG44 ARG45 PHE46 TRP47 ARG48 SER49 THR50 GLY51 PHE52 CYS53 PRO54 PRO55 TYR64 VAL65 LEU66 SER67 TRP68 ASP69 GLN70 GLN71 LEU72 ASN73 LEU74 ALA75 TYR76 VAL77 GLY78 ALA79 VAL80 PRO81 HIS82 ARG83 GLY84 ILE85 LYS86 GLN87 VAL88 ARG89 THR90 HIS91 TRP92 LEU93 LEU94 GLU95 LEU96 VAL97 THR98 THR99 LEU107 SER108 TYR109 ASN110 PHE111 THR112 HIS113 LEU114 ASP115 GLY116 TYR117 LEU118 ASP119 LEU120 LEU121 ARG122 GLU123 ASN124 GLN125 LEU126 LEU127 PRO128 GLY129 PHE130 GLU131 LEU132 MET133 GLY134 SER135 ALA136 SER137 GLY138 HIS139 PHE140 THR141 ASP142 PHE143 GLU144 ASP145 LYS146 GLN147 GLN148 VAL149 PHE150 GLU151 TRP152 LYS153 ASP154 LEU155 VAL156 SER157 SER158 LEU159 ALA160 ARG161 ARG162 TYR163 ILE164 GLY165 ARG166 TYR167 GLY168 LEU169 ALA170 HIS171 VAL172 SER173 LYS174 TRP175 ASN176 PHE177 GLU178 THR179 TRP180 ASN181 GLU182 PRO183 ASP184 HIS185 HIS186 ASP187 PHE188 ASP189 ASN190 VAL191 SER192 MET193 THR194 MET195 GLN196 GLY197 PHE198 LEU199 ASN200 TYR201 TYR202 ASP203 ALA204 CYS205 SER206 GLU207 GLY208 LEU209 ARG210 ALA211 ALA212 SER213 PRO214 ALA215 LEU216 ARG217 LEU218 GLY219 GLY220 PRO221 GLY222 ASP223 SER224 PHE225 HIS226 THR227 PRO228 PRO229 ARG230 SER231 PRO232 LEU233 SER234 TRP235 GLY236 LEU237 LEU238 ARG239 HIS240 CYS241 HIS242 ASP243 GLY244 THR245 ASN246 PHE247 PHE248 THR249 GLY250 GLU251 ALA252 GLY253 VAL254 ARG255 LEU256 ASP257 TYR258 ILE259 SER260 LEU261 HIS262 ARG263 LYS264 GLY265 ALA266 ARG267 SER268 SER269 ILE270 SER271 ILE272 LEU273 GLU274 GLN275 GLU276 LYS277 VAL278 VAL279 ALA280 GLN281 GLN282 ILE283 ARG284 GLN285 LEU286 PHE287 PRO288 LYS289 PHE290 ALA291 ASP292 THR293 PRO294 ILE295 TYR296 ASN297 ASP298 GLU299 ALA300 ASP301 PRO302 LEU303 VAL304 GLY305 TRP306 SER307 LEU308 PRO309 GLN310 PRO311 TRP312 ARG313 ALA314 ASP315 VAL316 THR317 TYR318 ALA319 ALA320 MET321 VAL322 VAL323 LYS324 VAL325 ILE326 ALA327 GLN328 HIS329 GLN330 ASN331 LEU332 LEU333 LEU334 ALA335 ASN336 THR337 THR338 SER339 ALA340 PHE341 PRO342 TYR343 ALA344 LEU345 LEU346 SER347 ASN348 ASP349 ASN350 ALA351 PHE352 LEU353 SER354 TYR355 HIS356 PRO357 HIS358 PRO359 PHE360 ALA361 GLN362 ARG363 THR364 LEU365 THR366 ALA367 ARG368 PHE369 GLN370 VAL371 ASN372 ASN373 THR374 ARG375 PRO376 PRO377 HIS378 VAL379 GLN380 LEU381 LEU382 ARG383 LYS384 PRO385 VAL386 LEU387 THR388 ALA389 MET390 GLY391 LEU392 LEU393 ALA394 LEU395 LEU396 ASP397 GLU398 GLU399 GLN400 LEU401 TRP402 ALA403 GLU404 VAL405 SER406 GLN407 ALA408 GLY409 THR410 VAL411 LEU412 ASP413 SER414 ASN415 HIS416 THR417 VAL418 GLY419 VAL420 LEU421 ALA422 SER423 ALA424 HIS425 ARG426 PRO427 GLN428 GLY429 PRO430 ALA431 ASP432 ALA433 TRP434 ARG435 ALA436 ALA437 VAL438 LEU439 ILE440 TYR441 ALA442 SER443 ASP444 ASP445 THR446 ARG447 ALA448 HIS449 PRO450 ASN451 ARG452 SER453 VAL454 ALA455 VAL456 THR457 LEU458 ARG459 LEU460 ARG461 GLY462 VAL463 PRO464 PRO465 GLY466 PRO467 GLY468 LEU469 VAL470 TYR471 VAL472 THR473 ARG474 TYR475 LEU476 ASP477 ASN478 GLY479 LEU480 CYS481 SER482 PRO483 ASP484 GLY485 GLU486 TRP487 ARG488 ARG489 LEU490 GLY491 ARG492 PRO493 VAL494 PHE495 PRO496 THR497 ALA498 GLU499 GLN500 PHE501 ARG502 ARG503 MET504 ARG505 ALA506 ALA507 GLU508 ASP509 PRO510 VAL511 ALA512 ALA513 ALA514 PRO515 ARG516 PRO517 LEU518 PRO519 ALA520 GLY521 GLY522 ARG523 LEU524 THR525 LEU526 ARG527 PRO528 ALA529 LEU530 ARG531 LEU532 PRO533 SER534 LEU535 LEU536 LEU537 VAL538 HIS539 VAL540 CYS541 ALA542 ARG543 PRO544 GLU545 LYS546 PRO547 PRO548 GLY549 GLN550 VAL551 THR552 ARG553 LEU554 ARG555 ALA556 LEU557 PRO558 LEU559 THR560 GLN561 GLY562 GLN563 LEU564 VAL565 LEU566 VAL567 TRP568 SER569 ASP570 GLU571 HIS572 VAL573 GLY574 SER575 LYS576 CYS577 LEU578 TRP579 THR580 TYR581 GLU582 ILE583 GLN584 PHE585 SER586 GLN587 ASP588 TYR592 THR593 PRO594 VAL595 SER596 ARG597 LYS598 PRO599 SER600 THR601 PHE602 ASN603 LEU604 PHE605 VAL606 PHE607 SER608 PRO609 ASP610 THR611 GLY612 ALA613 VAL614 SER615 GLY616 SER617 TYR618 ARG619 VAL620 ARG621 ALA622 LEU623 ASP624 TYR625 TRP626 ALA627 ARG628 PRO629 GLY630 PRO631 PHE632 SER633 ASP634 PRO635 VAL636 PRO637 TYR638 LEU639 GLU640
Unit 2 ALA28 PRO29 HIS30 LEU31 VAL32 GLN33 VAL34 ASP35 ALA36 ALA37 ARG38 ALA39 LEU40 TRP41 PRO42 LEU43 ARG44 ARG45 PHE46 TRP47 ARG48 SER49 THR50 GLY51 PHE52 CYS53 PRO54 PRO55 LEU56 ASP62 PRO63 TYR64 VAL65 LEU66 SER67 TRP68 ASP69 GLN70 GLN71 LEU72 ASN73 LEU74 ALA75 TYR76 VAL77 GLY78 ALA79 VAL80 PRO81 HIS82 ARG83 GLY84 ILE85 LYS86 GLN87 VAL88 ARG89 THR90 HIS91 TRP92 LEU93 LEU94 GLU95 LEU96 VAL97 THR98 THR99 ARG100 GLY101 SER102 THR103 LEU107 SER108 TYR109 ASN110 PHE111 THR112 HIS113 LEU114 ASP115 GLY116 TYR117 LEU118 ASP119 LEU120 LEU121 ARG122 GLU123 ASN124 GLN125 LEU126 LEU127 PRO128 GLY129 PHE130 GLU131 LEU132 MET133 GLY134 SER135 ALA136 SER137 GLY138 HIS139 PHE140 THR141 ASP142 PHE143 GLU144 ASP145 LYS146 GLN147 GLN148 VAL149 PHE150 GLU151 TRP152 LYS153 ASP154 LEU155 VAL156 SER157 SER158 LEU159 ALA160 ARG161 ARG162 TYR163 ILE164 GLY165 ARG166 TYR167 GLY168 LEU169 ALA170 HIS171 VAL172 SER173 LYS174 TRP175 ASN176 PHE177 GLU178 THR179 TRP180 ASN181 GLU182 PRO183 ASP184 HIS185 HIS186 ASP187 PHE188 ASP189 ASN190 VAL191 SER192 MET193 THR194 MET195 GLN196 GLY197 PHE198 LEU199 ASN200 TYR201 TYR202 ASP203 ALA204 CYS205 SER206 GLU207 GLY208 LEU209 ARG210 ALA211 ALA212 SER213 PRO214 ALA215 LEU216 ARG217 LEU218 GLY219 GLY220 PRO221 GLY222 ASP223 SER224 PHE225 HIS226 THR227 PRO228 PRO229 ARG230 SER231 PRO232 LEU233 SER234 TRP235 GLY236 LEU237 LEU238 ARG239 HIS240 CYS241 HIS242 ASP243 GLY244 THR245 ASN246 PHE247 PHE248 THR249 GLY250 GLU251 ALA252 GLY253 VAL254 ARG255 LEU256 ASP257 TYR258 ILE259 SER260 LEU261 HIS262 ARG263 LYS264 GLY265 ALA266 ARG267 SER268 SER269 ILE270 SER271 ILE272 LEU273 GLU274 GLN275 GLU276 LYS277 VAL278 VAL279 ALA280 GLN281 GLN282 ILE283 ARG284 GLN285 LEU286 PHE287 PRO288 LYS289 PHE290 ALA291 ASP292 THR293 PRO294 ILE295 TYR296 ASN297 ASP298 GLU299 ALA300 ASP301 PRO302 LEU303 VAL304 GLY305 TRP306 SER307 LEU308 PRO309 GLN310 PRO311 TRP312 ARG313 ALA314 ASP315 VAL316 THR317 TYR318 ALA319 ALA320 MET321 VAL322 VAL323 LYS324 VAL325 ILE326 ALA327 GLN328 HIS329 GLN330 ASN331 LEU332 LEU333 LEU334 ALA335 ASN336 THR337 THR338 SER339 ALA340 PHE341 PRO342 TYR343 ALA344 LEU345 LEU346 SER347 ASN348 ASP349 ASN350 ALA351 PHE352 LEU353 SER354 TYR355 HIS356 PRO357 HIS358 PRO359 PHE360 ALA361 GLN362 ARG363 THR364 LEU365 THR366 ALA367 ARG368 PHE369 GLN370 VAL371 ASN372 ASN373 THR374 ARG375 PRO376 PRO377 HIS378 VAL379 GLN380 LEU381 LEU382 ARG383 LYS384 PRO385 VAL386 LEU387 THR388 ALA389 MET390 GLY391 LEU392 LEU393 ALA394 LEU395 LEU396 ASP397 GLU398 GLU399 GLN400 LEU401 TRP402 ALA403 GLU404 VAL405 SER406 GLN407 ALA408 GLY409 THR410 VAL411 LEU412 ASP413 SER414 ASN415 HIS416 THR417 VAL418 GLY419 VAL420 LEU421 ALA422 SER423 ALA424 HIS425 ARG426 PRO427 GLN428 GLY429 PRO430 ALA431 ASP432 ALA433 TRP434 ARG435 ALA436 ALA437 VAL438 LEU439 ILE440 TYR441 ALA442 SER443 ASP444 ASP445 THR446 ARG447 ALA448 HIS449 PRO450 ASN451 ARG452 SER453 VAL454 ALA455 VAL456 THR457 LEU458 ARG459 LEU460 ARG461 GLY462 VAL463 PRO464 PRO465 GLY466 PRO467 GLY468 LEU469 VAL470 TYR471 VAL472 THR473 ARG474 TYR475 LEU476 ASP477 ASN478 GLY479 LEU480 CYS481 SER482 PRO483 ASP484 GLY485 GLU486 TRP487 ARG488 ARG489 LEU490 GLY491 ARG492 PRO493 VAL494 PHE495 PRO496 THR497 ALA498 GLU499 GLN500 PHE501 ARG502 ARG503 MET504 ARG505 ALA506 ALA507 GLU508 ASP509 PRO510 VAL511 ALA512 ALA513 ALA514 PRO515 ARG516 PRO517 LEU518 PRO519 ALA520 GLY521 GLY522 ARG523 LEU524 THR525 LEU526 ARG527 PRO528 ALA529 LEU530 ARG531 LEU532 PRO533 SER534 LEU535 LEU536 LEU537 VAL538 HIS539 VAL540 CYS541 ALA542 ARG543 PRO544 GLU545 LYS546 PRO547 PRO548 GLY549 GLN550 VAL551 THR552 ARG553 LEU554 ARG555 ALA556 LEU557 PRO558 LEU559 THR560 GLN561 GLY562 GLN563 LEU564 VAL565 LEU566 VAL567 TRP568 SER569 ASP570 GLU571 HIS572 VAL573 GLY574 SER575 LYS576 CYS577 LEU578 TRP579 THR580 TYR581 GLU582 ILE583 GLN584 PHE585 SER586 GLN587 ASP588 GLY589 LYS590 ALA591 TYR592 THR593 PRO594 VAL595 SER596 ARG597 LYS598 PRO599 SER600 THR601 PHE602 ASN603 LEU604 PHE605 VAL606 PHE607 SER608 PRO609 ASP610 THR611 GLY612 ALA613 VAL614 SER615 GLY616 SER617 TYR618 ARG619 VAL620 ARG621 ALA622 LEU623 ASP624 TYR625 TRP626 ALA627 ARG628 PRO629 GLY630 PRO631 PHE632 SER633 ASP634 PRO635 VAL636 PRO637 TYR638 LEU639 GLU640 VAL641 PRO642
Ligands
Unit 3 NAG1 NAG2
Unit 4 NAG1 NAG2 BMA3 MAN4 MAN5
Unit 5 NAG1 NAG2 BMA3
Unit 6 NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7
Unit 7 NAG901 GOL909 CL910
Unit 8 NAG901 GOL912 GOL913 GOL914 GOL915 GOL916 TLA917 SRT918 TLA919 CL920
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany