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Sequence, Chains, Asymmetric and Biological Units

Title THE CRYSTAL STRUCTURE OF BACILLUS SUBTILIS GABR, AN AUTOREPR PLP- AND GABA-DEPENDENT TRANSCRIPTIONAL ACTIVATOR OF GABT
Keywords WINGED HELIX TURN HELIX, TYPE-I AMINOTRANSFERASE, TRANSCRIPT REGULATOR, PLP BINDING, DNA BINDING
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4MGR     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HTH-TYPE TRANSCRIPTIONAL REGULATORY PROTEIN GABR  A 468 3800 0
2  Protein   HTH-TYPE TRANSCRIPTIONAL REGULATORY PROTEIN GABR  B 463 3757 0
3  Protein   HTH-TYPE TRANSCRIPTIONAL REGULATORY PROTEIN GABR  C 475 3855 0
4  Protein   HTH-TYPE TRANSCRIPTIONAL REGULATORY PROTEIN GABR  D 472 3831 0
5  Ligand   HTH-TYPE TRANSCRIPTIONAL REGULATORY PROTEIN GABR  A 3 0 10
6  Ligand   HTH-TYPE TRANSCRIPTIONAL REGULATORY PROTEIN GABR  B 6 0 22
7  Ligand   HTH-TYPE TRANSCRIPTIONAL REGULATORY PROTEIN GABR  C 4 0 14
8  Ligand   HTH-TYPE TRANSCRIPTIONAL REGULATORY PROTEIN GABR  D 4 0 14
9 Water     467 0 467
total       2362 15243 527
Proteins
Unit 1 ASP2 ILE3 THR4 ILE5 THR6 LEU7 ASP8 ARG9 SER10 GLU11 GLN12 ALA13 ASP14 TYR15 ILE16 TYR17 GLN18 GLN19 ILE20 TYR21 GLN22 LYS23 LEU24 LYS25 LYS26 GLU27 ILE28 LEU29 SER30 ARG31 ASN32 LEU33 LEU34 PRO35 HIS36 SER37 LYS38 VAL39 PRO40 SER41 LYS42 ARG43 GLU44 LEU45 ALA46 GLU47 ASN48 LEU49 LYS50 VAL51 SER52 VAL53 ASN54 SER55 VAL56 ASN57 SER58 ALA59 TYR60 GLN61 GLN62 LEU63 LEU64 ALA65 GLU66 GLY67 TYR68 LEU69 TYR70 ALA71 ILE72 GLU73 ARG74 LYS75 GLY76 PHE77 PHE78 VAL79 GLU80 GLU81 LEU82 ASP83 MET84 PHE85 SER86 ALA87 GLU88 GLU89 HIS90 PRO91 PRO92 PHE93 ALA94 LEU95 PRO96 ASP97 ASP98 LEU99 LYS100 GLU101 ILE102 HIS103 ILE104 ASP105 GLN106 SER107 ASP108 TRP109 ILE110 SER111 PHE112 SER113 HIS114 MET115 SER116 SER117 ASP118 THR119 ASP120 HIS121 PHE122 PRO123 ILE124 LYS125 SER126 TRP127 PHE128 ARG129 CYS130 GLU131 GLN132 LYS133 ALA134 ALA135 SER136 ARG137 SER138 TYR139 ARG140 THR141 LEU142 GLY143 ASP144 MET145 SER146 HIS147 PRO148 GLN149 GLY150 ILE151 TYR152 GLU153 VAL154 ARG155 ALA156 ALA157 ILE158 THR159 ARG160 LEU161 ILE162 SER163 LEU164 THR165 ARG166 GLY167 VAL168 LYS169 CYS170 ARG171 PRO172 GLU173 GLN174 MET175 ILE176 ILE177 GLY178 ALA179 GLY180 THR181 GLN182 VAL183 LEU184 MET185 GLN186 LEU187 LEU188 THR189 GLU190 LEU191 LEU192 PRO193 LYS194 GLU195 ALA196 VAL197 TYR198 ALA199 MET200 GLU201 GLU202 PRO203 GLY204 TYR205 ARG206 ARG207 MET208 TYR209 GLN210 LEU211 LEU212 LYS213 ASN214 ALA215 GLY216 LYS217 GLN218 VAL219 LYS220 THR221 ILE222 MET223 LEU224 ASP225 GLU226 LYS227 GLY228 MET229 SER230 ILE231 ALA232 GLU233 ILE234 THR235 ARG236 GLN237 GLN238 PRO239 ASP240 VAL241 LEU242 VAL243 THR244 THR245 PRO246 SER247 HIS248 GLN249 PHE250 PRO251 SER252 GLY253 THR254 ILE255 MET256 PRO257 VAL258 SER259 ARG260 ARG261 ILE262 GLN263 LEU264 LEU265 ASN266 TRP267 ALA268 ALA269 GLU270 GLU271 PRO272 ARG273 ARG274 TYR275 ILE276 ILE277 GLU278 ASP279 ASP280 TYR281 ASP282 SER283 GLU284 PHE285 THR286 TYR287 ASP288 VAL289 ASP290 SER291 ILE292 PRO293 ALA294 LEU295 GLN296 SER297 LEU298 ASP299 ARG300 PHE301 GLN302 ASN303 VAL304 ILE305 TYR306 MET307 GLY308 THR309 PHE310 SER311 LYS312 SER313 LEU314 LEU315 PRO316 GLY317 LEU318 ARG319 ILE320 SER321 TYR322 MET323 VAL324 LEU325 PRO326 PRO327 GLU328 LEU329 LEU330 ARG331 ALA332 TYR333 LYS334 GLN335 ARG336 GLY337 TYR338 ASP339 LEU340 GLN341 THR342 CYS343 SER344 SER345 LEU346 THR347 GLN348 LEU349 THR350 LEU351 GLN352 GLU353 PHE354 ILE355 GLU356 SER357 GLY358 GLU359 TYR360 GLN361 LYS362 HIS363 ILE364 LYS365 LYS366 MET367 LYS368 GLN369 HIS370 TYR371 LYS372 GLU373 LYS374 ARG375 GLU376 ARG377 LEU378 ILE379 THR380 ALA381 LEU382 GLU383 ALA384 GLU385 PHE386 SER387 GLY388 GLU389 VAL390 THR391 VAL392 LYS393 GLY394 ALA395 ASN396 ALA397 GLY398 LEU399 HIS400 PHE401 VAL402 THR403 GLU404 PHE405 ASP406 THR407 ARG408 ARG409 THR410 GLU411 GLN412 ASP413 ILE414 LEU415 SER416 HIS417 ALA418 ALA419 GLY420 LEU421 GLN422 LEU423 GLU424 ILE425 PHE426 GLY427 MET428 SER429 ARG430 PHE431 ASN432 LEU433 LYS434 GLU435 ASN436 LYS437 ARG438 GLN439 THR440 GLY441 ARG442 PRO443 ALA444 LEU445 ILE446 ILE447 GLY448 PHE449 ALA450 ARG451 LEU452 LYS453 GLU454 GLU455 ASP456 ILE457 GLN458 GLU459 GLY460 VAL461 GLN462 ARG463 LEU464 PHE465 LYS466 ALA467 VAL468 TYR469
Unit 2 ASP2 ILE3 THR4 ILE5 THR6 LEU7 ASP8 ARG9 SER10 GLU11 GLN12 ALA13 ASP14 TYR15 ILE16 TYR17 GLN18 GLN19 ILE20 TYR21 GLN22 LYS23 LEU24 LYS25 LYS26 GLU27 ILE28 LEU29 SER30 ARG31 ASN32 LEU33 LEU34 PRO35 HIS36 SER37 LYS38 VAL39 PRO40 SER41 LYS42 ARG43 GLU44 LEU45 ALA46 GLU47 ASN48 LEU49 LYS50 VAL51 SER52 VAL53 ASN54 SER55 VAL56 ASN57 SER58 ALA59 TYR60 GLN61 GLN62 LEU63 LEU64 ALA65 GLU66 GLY67 TYR68 LEU69 TYR70 ALA71 ILE72 GLU73 ARG74 LYS75 GLY76 PHE77 PHE78 VAL79 GLU80 GLU81 LEU82 ASP83 MET84 PHE85 SER86 ALA87 PRO96 ASP97 ASP98 LEU99 LYS100 GLU101 ILE102 HIS103 ILE104 ASP105 GLN106 SER107 ASP108 TRP109 ILE110 SER111 PHE112 SER113 HIS114 MET115 SER116 SER117 ASP118 THR119 ASP120 HIS121 PHE122 PRO123 ILE124 LYS125 SER126 TRP127 PHE128 ARG129 CYS130 GLU131 GLN132 LYS133 ALA134 ALA135 SER136 ARG137 SER138 TYR139 ARG140 THR141 LEU142 GLY143 ASP144 MET145 SER146 HIS147 PRO148 GLN149 GLY150 ILE151 TYR152 GLU153 VAL154 ARG155 ALA156 ALA157 ILE158 THR159 ARG160 LEU161 ILE162 SER163 LEU164 THR165 ARG166 GLY167 VAL168 LYS169 CYS170 ARG171 PRO172 GLU173 GLN174 MET175 ILE176 ILE177 GLY178 ALA179 GLY180 THR181 GLN182 VAL183 LEU184 MET185 GLN186 LEU187 LEU188 THR189 GLU190 LEU191 LEU192 PRO193 LYS194 GLU195 ALA196 VAL197 TYR198 ALA199 MET200 GLU201 GLU202 PRO203 GLY204 TYR205 ARG206 ARG207 MET208 TYR209 GLN210 LEU211 LEU212 LYS213 ASN214 ALA215 GLY216 LYS217 GLN218 VAL219 LYS220 THR221 ILE222 MET223 LEU224 ASP225 GLU226 LYS227 GLY228 MET229 SER230 ILE231 ALA232 GLU233 ILE234 THR235 ARG236 GLN237 GLN238 PRO239 ASP240 VAL241 LEU242 VAL243 THR244 THR245 PRO246 SER247 HIS248 GLN249 PHE250 PRO251 SER252 GLY253 THR254 ILE255 MET256 PRO257 VAL258 SER259 ARG260 ARG261 ILE262 GLN263 LEU264 LEU265 ASN266 TRP267 ALA268 ALA269 GLU270 GLU271 PRO272 ARG273 ARG274 TYR275 ILE276 ILE277 GLU278 ASP279 ASP280 TYR281 ASP282 SER283 GLU284 PHE285 THR286 TYR287 ASP288 VAL289 ASP290 SER291 ILE292 PRO293 ALA294 LEU295 GLN296 SER297 LEU298 ASP299 ARG300 PHE301 GLN302 ASN303 VAL304 ILE305 TYR306 MET307 GLY308 THR309 PHE310 SER311 LYS312 SER313 LEU314 LEU315 PRO316 GLY317 LEU318 ARG319 ILE320 SER321 TYR322 MET323 VAL324 LEU325 PRO326 PRO327 GLU328 LEU329 LEU330 ARG331 ALA332 TYR333 LYS334 GLN335 ARG336 GLY337 TYR338 ASP339 LEU340 GLN341 THR342 CYS343 SER344 SER345 LEU346 THR347 GLN348 LEU349 THR350 LEU351 GLN352 GLU353 PHE354 ILE355 GLU356 SER357 GLY358 GLU359 TYR360 GLN361 LYS362 HIS363 ILE364 LYS365 LYS366 MET367 LYS368 GLN369 HIS370 TYR371 LYS372 GLU373 LYS374 ARG375 GLU376 ARG377 LEU378 ILE379 THR380 ALA381 LEU382 GLU383 ALA384 GLU385 PHE386 SER387 GLY388 GLU389 VAL390 THR391 VAL392 LYS393 GLY394 ALA395 ASN396 ALA397 GLY398 LEU399 HIS400 PHE401 VAL402 THR403 GLU404 PHE405 ASP406 THR407 ARG408 ARG409 THR410 GLU411 GLN412 ASP413 ILE414 LEU415 SER416 HIS417 ALA418 ALA419 GLY420 LEU421 GLN422 LEU423 GLU424 ILE425 PHE426 GLY427 MET428 SER429 ARG430 PHE431 ASN432 LEU433 LYS434 GLU435 ASN436 LYS437 ARG438 GLN439 THR440 GLY441 ARG442 PRO443 ALA444 LEU445 ILE446 ILE447 GLY448 PHE449 ALA450 ARG451 LEU452 LYS453 GLU454 GLU455 ASP456 ILE457 GLN458 GLU459 GLY460 VAL461 GLN462 ARG463 LEU464 PHE465 LYS466 ALA467 VAL468 TYR469 GLY470 HIS471 LYS472
Unit 3 MET1 ASP2 ILE3 THR4 ILE5 THR6 LEU7 ASP8 ARG9 SER10 GLU11 GLN12 ALA13 ASP14 TYR15 ILE16 TYR17 GLN18 GLN19 ILE20 TYR21 GLN22 LYS23 LEU24 LYS25 LYS26 GLU27 ILE28 LEU29 SER30 ARG31 ASN32 LEU33 LEU34 PRO35 HIS36 SER37 LYS38 VAL39 PRO40 SER41 LYS42 ARG43 GLU44 LEU45 ALA46 GLU47 ASN48 LEU49 LYS50 VAL51 SER52 VAL53 ASN54 SER55 VAL56 ASN57 SER58 ALA59 TYR60 GLN61 GLN62 LEU63 LEU64 ALA65 GLU66 GLY67 TYR68 LEU69 TYR70 ALA71 ILE72 GLU73 ARG74 LYS75 GLY76 PHE77 PHE78 VAL79 GLU80 GLU81 LEU82 ASP83 MET84 PHE85 SER86 ALA87 GLU88 GLU89 HIS90 PRO91 PRO92 PHE93 ALA94 LEU95 PRO96 ASP97 ASP98 LEU99 LYS100 GLU101 ILE102 HIS103 ILE104 ASP105 GLN106 SER107 ASP108 TRP109 ILE110 SER111 PHE112 SER113 HIS114 MET115 SER116 SER117 ASP118 THR119 ASP120 HIS121 PHE122 PRO123 ILE124 LYS125 SER126 TRP127 PHE128 ARG129 CYS130 GLU131 GLN132 LYS133 ALA134 ALA135 SER136 ARG137 SER138 TYR139 ARG140 THR141 LEU142 GLY143 ASP144 MET145 SER146 HIS147 PRO148 GLN149 GLY150 ILE151 TYR152 GLU153 VAL154 ARG155 ALA156 ALA157 ILE158 THR159 ARG160 LEU161 ILE162 SER163 LEU164 THR165 ARG166 GLY167 VAL168 LYS169 CYS170 ARG171 PRO172 GLU173 GLN174 MET175 ILE176 ILE177 GLY178 ALA179 GLY180 THR181 GLN182 VAL183 LEU184 MET185 GLN186 LEU187 LEU188 THR189 GLU190 LEU191 LEU192 PRO193 LYS194 GLU195 ALA196 VAL197 TYR198 ALA199 MET200 GLU201 GLU202 PRO203 GLY204 TYR205 ARG206 ARG207 MET208 TYR209 GLN210 LEU211 LEU212 LYS213 ASN214 ALA215 GLY216 LYS217 GLN218 VAL219 LYS220 THR221 ILE222 MET223 LEU224 ASP225 GLU226 LYS227 GLY228 MET229 SER230 ILE231 ALA232 GLU233 ILE234 THR235 ARG236 GLN237 GLN238 PRO239 ASP240 VAL241 LEU242 VAL243 THR244 THR245 PRO246 SER247 HIS248 GLN249 PHE250 PRO251 SER252 GLY253 THR254 ILE255 MET256 PRO257 VAL258 SER259 ARG260 ARG261 ILE262 GLN263 LEU264 LEU265 ASN266 TRP267 ALA268 ALA269 GLU270 GLU271 PRO272 ARG273 ARG274 TYR275 ILE276 ILE277 GLU278 ASP279 ASP280 TYR281 ASP282 SER283 GLU284 PHE285 THR286 TYR287 ASP288 VAL289 ASP290 SER291 ILE292 PRO293 ALA294 LEU295 GLN296 SER297 LEU298 ASP299 ARG300 PHE301 GLN302 ASN303 VAL304 ILE305 TYR306 MET307 GLY308 THR309 PHE310 SER311 LYS312 SER313 LEU314 LEU315 PRO316 GLY317 LEU318 ARG319 ILE320 SER321 TYR322 MET323 VAL324 LEU325 PRO326 PRO327 GLU328 LEU329 LEU330 ARG331 ALA332 TYR333 LYS334 GLN335 ARG336 GLY337 TYR338 ASP339 LEU340 GLN341 THR342 CYS343 SER344 SER345 LEU346 THR347 GLN348 LEU349 THR350 LEU351 GLN352 GLU353 PHE354 ILE355 GLU356 SER357 GLY358 GLU359 TYR360 GLN361 LYS362 HIS363 ILE364 LYS365 LYS366 MET367 LYS368 GLN369 HIS370 TYR371 LYS372 GLU373 LYS374 ARG375 GLU376 ARG377 LEU378 ILE379 THR380 ALA381 LEU382 GLU383 ALA384 GLU385 PHE386 SER387 GLY388 GLU389 VAL390 THR391 VAL392 LYS393 GLY394 ALA395 ASN396 ALA397 GLY398 LEU399 HIS400 PHE401 VAL402 THR403 GLU404 PHE405 ASP406 THR407 ARG408 ARG409 THR410 GLU411 GLN412 ASP413 ILE414 LEU415 SER416 HIS417 ALA418 ALA419 GLY420 LEU421 GLN422 LEU423 GLU424 ILE425 PHE426 GLY427 MET428 SER429 ARG430 PHE431 ASN432 LEU433 LYS434 GLU435 ASN436 LYS437 ARG438 GLN439 THR440 GLY441 ARG442 PRO443 ALA444 LEU445 ILE446 ILE447 GLY448 PHE449 ALA450 ARG451 LEU452 LYS453 GLU454 GLU455 ASP456 ILE457 GLN458 GLU459 GLY460 VAL461 GLN462 ARG463 LEU464 PHE465 LYS466 ALA467 VAL468 TYR469 GLY470 HIS471 LYS472 LYS473 ILE474 PRO475
Unit 4 MET1 ASP2 ILE3 THR4 ILE5 THR6 LEU7 ASP8 ARG9 SER10 GLU11 GLN12 ALA13 ASP14 TYR15 ILE16 TYR17 GLN18 GLN19 ILE20 TYR21 GLN22 LYS23 LEU24 LYS25 LYS26 GLU27 ILE28 LEU29 SER30 ARG31 ASN32 LEU33 LEU34 PRO35 HIS36 SER37 LYS38 VAL39 PRO40 SER41 LYS42 ARG43 GLU44 LEU45 ALA46 GLU47 ASN48 LEU49 LYS50 VAL51 SER52 VAL53 ASN54 SER55 VAL56 ASN57 SER58 ALA59 TYR60 GLN61 GLN62 LEU63 LEU64 ALA65 GLU66 GLY67 TYR68 LEU69 TYR70 ALA71 ILE72 GLU73 ARG74 LYS75 GLY76 PHE77 PHE78 VAL79 GLU80 GLU81 LEU82 ASP83 MET84 PHE85 SER86 ALA87 GLU88 GLU89 HIS90 PRO91 PRO92 PHE93 ALA94 LEU95 PRO96 ASP97 ASP98 LEU99 LYS100 GLU101 ILE102 HIS103 ILE104 ASP105 GLN106 SER107 ASP108 TRP109 ILE110 SER111 PHE112 SER113 HIS114 MET115 SER116 SER117 ASP118 THR119 ASP120 HIS121 PHE122 PRO123 ILE124 LYS125 SER126 TRP127 PHE128 ARG129 CYS130 GLU131 GLN132 LYS133 ALA134 ALA135 SER136 ARG137 SER138 TYR139 ARG140 THR141 LEU142 GLY143 ASP144 MET145 SER146 HIS147 PRO148 GLN149 GLY150 ILE151 TYR152 GLU153 VAL154 ARG155 ALA156 ALA157 ILE158 THR159 ARG160 LEU161 ILE162 SER163 LEU164 THR165 ARG166 GLY167 VAL168 LYS169 CYS170 ARG171 PRO172 GLU173 GLN174 MET175 ILE176 ILE177 GLY178 ALA179 GLY180 THR181 GLN182 VAL183 LEU184 MET185 GLN186 LEU187 LEU188 THR189 GLU190 LEU191 LEU192 PRO193 LYS194 GLU195 ALA196 VAL197 TYR198 ALA199 MET200 GLU201 GLU202 PRO203 GLY204 TYR205 ARG206 ARG207 MET208 TYR209 GLN210 LEU211 LEU212 LYS213 ASN214 ALA215 GLY216 LYS217 GLN218 VAL219 LYS220 THR221 ILE222 MET223 LEU224 ASP225 GLU226 LYS227 GLY228 MET229 SER230 ILE231 ALA232 GLU233 ILE234 THR235 ARG236 GLN237 GLN238 PRO239 ASP240 VAL241 LEU242 VAL243 THR244 THR245 PRO246 SER247 HIS248 GLN249 PHE250 PRO251 SER252 GLY253 THR254 ILE255 MET256 PRO257 VAL258 SER259 ARG260 ARG261 ILE262 GLN263 LEU264 LEU265 ASN266 TRP267 ALA268 ALA269 GLU270 GLU271 PRO272 ARG273 ARG274 TYR275 ILE276 ILE277 GLU278 ASP279 ASP280 TYR281 ASP282 SER283 GLU284 PHE285 THR286 TYR287 ASP288 VAL289 ASP290 SER291 ILE292 PRO293 ALA294 LEU295 GLN296 SER297 LEU298 ASP299 ARG300 PHE301 GLN302 ASN303 VAL304 ILE305 TYR306 MET307 GLY308 THR309 PHE310 SER311 LYS312 SER313 LEU314 LEU315 PRO316 GLY317 LEU318 ARG319 ILE320 SER321 TYR322 MET323 VAL324 LEU325 PRO326 PRO327 GLU328 LEU329 LEU330 ARG331 ALA332 TYR333 LYS334 GLN335 ARG336 GLY337 TYR338 ASP339 LEU340 GLN341 THR342 CYS343 SER344 SER345 LEU346 THR347 GLN348 LEU349 THR350 LEU351 GLN352 GLU353 PHE354 ILE355 GLU356 SER357 GLY358 GLU359 TYR360 GLN361 LYS362 HIS363 ILE364 LYS365 LYS366 MET367 LYS368 GLN369 HIS370 TYR371 LYS372 GLU373 LYS374 ARG375 GLU376 ARG377 LEU378 ILE379 THR380 ALA381 LEU382 GLU383 ALA384 GLU385 PHE386 SER387 GLY388 GLU389 VAL390 THR391 VAL392 LYS393 GLY394 ALA395 ASN396 ALA397 GLY398 LEU399 HIS400 PHE401 VAL402 THR403 GLU404 PHE405 ASP406 THR407 ARG408 ARG409 THR410 GLU411 GLN412 ASP413 ILE414 LEU415 SER416 HIS417 ALA418 ALA419 GLY420 LEU421 GLN422 LEU423 GLU424 ILE425 PHE426 GLY427 MET428 SER429 ARG430 PHE431 ASN432 LEU433 LYS434 GLU435 ASN436 LYS437 ARG438 GLN439 THR440 GLY441 ARG442 PRO443 ALA444 LEU445 ILE446 ILE447 GLY448 PHE449 ALA450 ARG451 LEU452 LYS453 GLU454 GLU455 ASP456 ILE457 GLN458 GLU459 GLY460 VAL461 GLN462 ARG463 LEU464 PHE465 LYS466 ALA467 VAL468 TYR469 GLY470 HIS471 LYS472
Ligands
Unit 5 ZN501 IMD502 ACT503
Unit 6 ZN501 IMD502 ACT503 ACT504 ACT505 ACT506
Unit 7 ZN501 IMD502 ACT503 ACT504
Unit 8 ZN501 IMD502 ACT503 ACT504
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany