Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF BACILLUS SUBTILIS MAZF IN COMPLEX WITH
Keywords TOXIN-ANTITOXIN COMPLEX, TOXIN-MRNA COMPLEX, MAZF, MRNA INTE ENDOA, YDCE, TOXIN, ANTITOXIN, MAZE, HYDROLASE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4MDX     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MRNA INTERFERASE ENDOA  A 115 898 0
2  Protein   MRNA INTERFERASE ENDOA  B 115 898 0
3  RNA    C 9 184 0
4  Ligand   MRNA INTERFERASE ENDOA  A 4 0 4
5  Ligand   MRNA INTERFERASE ENDOA  B 2 0 2
6  Ligand   RNA, MRNA  C 1 0 1
7 Water     354 0 354
total       600 1980 361

Proteins
Unit 1 SER0 MET1 ILE2 VAL3 LYS4 ARG5 GLY6 ASP7 VAL8 TYR9 PHE10 ALA11 ASP12 LEU13 SER14 PRO15 VAL16 VAL17 GLY18 SER19 GLU20 GLN21 GLY22 GLY23 VAL24 ARG25 PRO26 VAL27 LEU28 VAL29 ILE30 GLN31 ASN32 ASP33 ILE34 GLY35 ASN36 ARG37 PHE38 SER39 PRO40 THR41 ALA42 ILE43 VAL44 ALA45 ALA46 ILE47 THR48 ALA49 GLN50 ILE51 GLN52 LYS53 ALA54 LYS55 LEU56 PRO57 THR58 HIS59 VAL60 GLU61 ILE62 ASP63 ALA64 LYS65 ARG66 TYR67 GLY68 PHE69 GLU70 ARG71 ASP72 SER73 VAL74 ILE75 LEU76 LEU77 GLU78 GLN79 ILE80 ARG81 THR82 ILE83 ASP84 LYS85 GLN86 ARG87 LEU88 THR89 ASP90 LYS91 ILE92 THR93 HIS94 LEU95 ASP96 ASP97 GLU98 MET99 MET100 ASP101 LYS102 VAL103 ASP104 GLU105 ALA106 LEU107 GLN108 ILE109 SER110 LEU111 ALA112 LEU113 ILE114
Unit 2 SER0 MET1 ILE2 VAL3 LYS4 ARG5 GLY6 ASP7 VAL8 TYR9 PHE10 ALA11 ASP12 LEU13 SER14 PRO15 VAL16 VAL17 GLY18 SER19 GLU20 GLN21 GLY22 GLY23 VAL24 ARG25 PRO26 VAL27 LEU28 VAL29 ILE30 GLN31 ASN32 ASP33 ILE34 GLY35 ASN36 ARG37 PHE38 SER39 PRO40 THR41 ALA42 ILE43 VAL44 ALA45 ALA46 ILE47 THR48 ALA49 GLN50 ILE51 GLN52 LYS53 ALA54 LYS55 LEU56 PRO57 THR58 HIS59 VAL60 GLU61 ILE62 ASP63 ALA64 LYS65 ARG66 TYR67 GLY68 PHE69 GLU70 ARG71 ASP72 SER73 VAL74 ILE75 LEU76 LEU77 GLU78 GLN79 ILE80 ARG81 THR82 ILE83 ASP84 LYS85 GLN86 ARG87 LEU88 THR89 ASP90 LYS91 ILE92 THR93 HIS94 LEU95 ASP96 ASP97 GLU98 MET99 MET100 ASP101 LYS102 VAL103 ASP104 GLU105 ALA106 LEU107 GLN108 ILE109 SER110 LEU111 ALA112 LEU113 ILE114

Nucleic acids
Unit 3 U1 U2 DU3 A4 C5 A6 U7 A8 A9

Ligands
Unit 4 IOD201 IOD202 IOD203 NA204
Unit 5 IOD201 IOD202
Unit 6 IOD101

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany