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Title | BETAINE-HOMOCYSTEINE S-METHYLTRANSFERASE FROM HOMO SAPIENS C WITH HOMOCYSTEINE | |
Keywords | ALPHA AND BETA PROTEINS (A/B), TIM BETA/ALPHA-BARREL, METHYLTRANSFERASE ACTIVITY, HOMOCYSTEINE S-METHYLTRANSFERAS ACTIVITY, TRANSFERASE ACTIVITY, METAL ION BINDING, BETAINE- HOMOCYSTEINE S-METHYLTRANSFERASE ACTIVITY, PROTEIN COMPLEX BETAINE, HOMOCYSTEINE, TRANSFERASE | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 4M3P | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1 | A | 370 | 5726 | 0 |
2 | Protein | BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1 | B | 373 | 5772 | 0 |
3 | Protein | BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1 | C | 355 | 5505 | 0 |
4 | Protein | BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1 | D | 371 | 5755 | 0 |
5 | Ligand | BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1 | A | 3 | 0 | 17 |
6 | Ligand | BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1 | B | 4 | 0 | 31 |
7 | Ligand | BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1 | C | 3 | 0 | 17 |
8 | Ligand | BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1 | D | 4 | 0 | 30 |
9 | Water | 644 | 0 | 644 | ||
total | 2127 | 22758 | 739 |
Unit 1 | LYS10 LYS11 GLY12 ILE13 LEU14 GLU15 ARG16 LEU17 ASN18 ALA19 GLY20 GLU21 ILE22 VAL23 ILE24 GLY25 ASP26 GLY27 GLY28 PHE29 VAL30 PHE31 ALA32 LEU33 GLU34 LYS35 ARG36 GLY37 TYR38 VAL39 LYS40 ALA41 GLY42 PRO43 TRP44 THR45 PRO46 GLU47 ALA48 ALA49 VAL50 GLU51 HIS52 PRO53 GLU54 ALA55 VAL56 ARG57 GLN58 LEU59 HIS60 ARG61 GLU62 PHE63 LEU64 ARG65 ALA66 GLY67 SER68 ASN69 VAL70 MET71 GLN72 THR73 PHE74 THR75 PHE76 TYR77 SER95 GLY96 GLN97 GLU98 VAL99 ASN100 GLU101 ALA102 ALA103 CYS104 ASP105 ILE106 ALA107 ARG108 GLN109 VAL110 ALA111 ASP112 GLU113 GLY114 ASP115 ALA116 LEU117 VAL118 ALA119 GLY120 GLY121 VAL122 SER123 GLN124 THR125 PRO126 LYS132 SER133 GLU134 THR135 GLU136 VAL137 LYS138 LYS139 VAL140 PHE141 LEU142 GLN143 GLN144 LEU145 GLU146 VAL147 PHE148 MET149 LYS150 LYS151 ASN152 VAL153 ASP154 PHE155 LEU156 ILE157 ALA158 GLU159 TYR160 PHE161 GLU162 HIS163 VAL164 GLU165 GLU166 ALA167 VAL168 TRP169 ALA170 VAL171 GLU172 THR173 LEU174 ILE175 ALA176 SER177 GLY178 LYS179 PRO180 VAL181 ALA182 ALA183 THR184 MET185 CYS186 ILE187 GLY188 PRO189 GLU190 GLY191 ASP192 LEU193 HIS194 GLY195 VAL196 PRO197 PRO198 GLY199 GLU200 CYS201 ALA202 VAL203 ARG204 LEU205 VAL206 LYS207 ALA208 GLY209 ALA210 SER211 ILE212 ILE213 GLY214 VAL215 ASN216 CYS217 HIS218 PHE219 ASP220 PRO221 THR222 ILE223 SER224 LEU225 LYS226 THR227 VAL228 LYS229 LEU230 MET231 LYS232 GLU233 GLY234 LEU235 GLU236 ALA237 ALA238 GLN239 LEU240 LYS241 ALA242 HIS243 LEU244 MET245 SER246 GLN247 PRO248 LEU249 ALA250 TYR251 HIS252 THR253 PRO254 ASP255 CYS256 ASN257 LYS258 GLN259 GLY260 PHE261 ILE262 ASP263 LEU264 PRO265 GLU266 PHE267 PRO268 PHE269 GLY270 LEU271 GLU272 PRO273 ARG274 VAL275 ALA276 THR277 ARG278 TRP279 ASP280 ILE281 GLN282 LYS283 TYR284 ALA285 ARG286 GLU287 ALA288 TYR289 ASN290 LEU291 GLY292 VAL293 ARG294 TYR295 ILE296 GLY297 GLY298 CYS299 CYS300 GLY301 PHE302 GLU303 PRO304 TYR305 HIS306 ILE307 ARG308 ALA309 ILE310 ALA311 GLU312 GLU313 LEU314 ALA315 PRO316 GLU317 ARG318 GLY319 PHE320 LEU321 PRO322 PRO323 ALA324 SER325 GLU326 LYS327 HIS328 GLY329 SER330 TRP331 GLY332 SER333 GLY334 LEU335 ASP336 MET337 HIS338 THR339 LYS340 PRO341 TRP342 VAL343 ARG344 ALA345 ARG346 ALA347 ARG348 LYS349 GLU350 TYR351 TRP352 GLU353 ASN354 LEU355 ARG356 ILE357 ALA358 SER359 GLY360 ARG361 PRO362 TYR363 ASN364 PRO365 SER366 MET367 SER368 LYS369 PRO370 ASP371 GLY372 TRP373 GLY374 VAL375 THR376 LYS377 GLY378 THR379 ALA380 GLU381 LEU382 MET383 GLN384 GLN385 LYS386 GLU387 ALA388 THR389 THR390 GLU391 GLN392 GLN393 LEU394 LYS395 GLU396 LEU397 PHE398 GLU399 LYS400 GLN401 |
Unit 2 | LYS8 ALA9 LYS10 LYS11 GLY12 ILE13 LEU14 GLU15 ARG16 LEU17 ASN18 ALA19 GLY20 GLU21 ILE22 VAL23 ILE24 GLY25 ASP26 GLY27 GLY28 PHE29 VAL30 PHE31 ALA32 LEU33 GLU34 LYS35 ARG36 GLY37 TYR38 VAL39 LYS40 ALA41 GLY42 PRO43 TRP44 THR45 PRO46 GLU47 ALA48 ALA49 VAL50 GLU51 HIS52 PRO53 GLU54 ALA55 VAL56 ARG57 GLN58 LEU59 HIS60 ARG61 GLU62 PHE63 LEU64 ARG65 ALA66 GLY67 SER68 ASN69 VAL70 MET71 GLN72 THR73 PHE74 THR75 PHE76 TYR77 SER95 GLY96 GLN97 GLU98 VAL99 ASN100 GLU101 ALA102 ALA103 CYS104 ASP105 ILE106 ALA107 ARG108 GLN109 VAL110 ALA111 ASP112 GLU113 GLY114 ASP115 ALA116 LEU117 VAL118 ALA119 GLY120 GLY121 VAL122 SER123 GLN124 THR125 PRO126 SER133 GLU134 THR135 GLU136 VAL137 LYS138 LYS139 VAL140 PHE141 LEU142 GLN143 GLN144 LEU145 GLU146 VAL147 PHE148 MET149 LYS150 LYS151 ASN152 VAL153 ASP154 PHE155 LEU156 ILE157 ALA158 GLU159 TYR160 PHE161 GLU162 HIS163 VAL164 GLU165 GLU166 ALA167 VAL168 TRP169 ALA170 VAL171 GLU172 THR173 LEU174 ILE175 ALA176 SER177 GLY178 LYS179 PRO180 VAL181 ALA182 ALA183 THR184 MET185 CYS186 ILE187 GLY188 PRO189 GLU190 GLY191 ASP192 LEU193 HIS194 GLY195 VAL196 PRO197 PRO198 GLY199 GLU200 CYS201 ALA202 VAL203 ARG204 LEU205 VAL206 LYS207 ALA208 GLY209 ALA210 SER211 ILE212 ILE213 GLY214 VAL215 ASN216 CYS217 HIS218 PHE219 ASP220 PRO221 THR222 ILE223 SER224 LEU225 LYS226 THR227 VAL228 LYS229 LEU230 MET231 LYS232 GLU233 GLY234 LEU235 GLU236 ALA237 ALA238 GLN239 LEU240 LYS241 ALA242 HIS243 LEU244 MET245 SER246 GLN247 PRO248 LEU249 ALA250 TYR251 HIS252 THR253 PRO254 ASP255 CYS256 ASN257 LYS258 GLN259 GLY260 PHE261 ILE262 ASP263 LEU264 PRO265 GLU266 PHE267 PRO268 PHE269 GLY270 LEU271 GLU272 PRO273 ARG274 VAL275 ALA276 THR277 ARG278 TRP279 ASP280 ILE281 GLN282 LYS283 TYR284 ALA285 ARG286 GLU287 ALA288 TYR289 ASN290 LEU291 GLY292 VAL293 ARG294 TYR295 ILE296 GLY297 GLY298 CYS299 CYS300 GLY301 PHE302 GLU303 PRO304 TYR305 HIS306 ILE307 ARG308 ALA309 ILE310 ALA311 GLU312 GLU313 LEU314 ALA315 PRO316 GLU317 ARG318 GLY319 PHE320 LEU321 PRO322 PRO323 ALA324 SER325 GLU326 LYS327 HIS328 GLY329 SER330 TRP331 GLY332 SER333 GLY334 LEU335 ASP336 MET337 HIS338 THR339 LYS340 PRO341 TRP342 VAL343 ARG344 ALA345 ARG346 ALA347 ARG348 LYS349 GLU350 TYR351 TRP352 GLU353 ASN354 LEU355 ARG356 ILE357 ALA358 SER359 GLY360 ARG361 PRO362 TYR363 ASN364 PRO365 SER366 MET367 SER368 LYS369 PRO370 ASP371 GLY372 TRP373 GLY374 VAL375 THR376 LYS377 GLY378 THR379 ALA380 GLU381 LEU382 MET383 GLN384 GLN385 LYS386 GLU387 ALA388 THR389 THR390 GLU391 GLN392 GLN393 LEU394 LYS395 GLU396 LEU397 PHE398 GLU399 LYS400 GLN401 LYS402 PHE403 |
Unit 3 | LYS10 LYS11 GLY12 ILE13 LEU14 GLU15 ARG16 LEU17 ASN18 ALA19 GLY20 GLU21 ILE22 VAL23 ILE24 GLY25 ASP26 GLY27 GLY28 PHE29 VAL30 PHE31 ALA32 LEU33 GLU34 LYS35 ARG36 GLY37 TYR38 VAL39 LYS40 ALA41 GLY42 PRO43 TRP44 THR45 PRO46 GLU47 ALA48 ALA49 VAL50 GLU51 HIS52 PRO53 GLU54 ALA55 VAL56 ARG57 GLN58 LEU59 HIS60 ARG61 GLU62 PHE63 LEU64 ARG65 ALA66 GLY67 SER68 ASN69 VAL70 MET71 GLN72 THR73 PHE74 THR75 PHE76 TYR77 LYS93 ILE94 SER95 GLY96 GLN97 GLU98 VAL99 ASN100 GLU101 ALA102 ALA103 CYS104 ASP105 ILE106 ALA107 ARG108 GLN109 VAL110 ALA111 ASP112 GLU113 GLY114 ASP115 ALA116 LEU117 VAL118 ALA119 GLY120 GLY121 VAL122 SER123 GLN124 THR125 PRO126 SER127 TYR128 LEU129 SER130 CYS131 LYS132 SER133 GLU134 THR135 GLU136 VAL137 LYS138 LYS139 VAL140 PHE141 LEU142 GLN143 GLN144 LEU145 GLU146 VAL147 PHE148 MET149 LYS150 LYS151 ASN152 VAL153 ASP154 PHE155 LEU156 ILE157 ALA158 GLU159 TYR160 PHE161 GLU162 HIS163 VAL164 GLU165 GLU166 ALA167 VAL168 TRP169 ALA170 VAL171 GLU172 THR173 LEU174 ILE175 ALA176 SER177 GLY178 LYS179 PRO180 VAL181 ALA182 ALA183 THR184 MET185 CYS186 ILE187 GLY188 PRO189 GLU190 GLY191 ASP192 LEU193 HIS194 GLY195 VAL196 PRO197 PRO198 GLY199 GLU200 CYS201 ALA202 VAL203 ARG204 LEU205 VAL206 LYS207 ALA208 GLY209 ALA210 SER211 ILE212 ILE213 GLY214 VAL215 ASN216 CYS217 HIS218 PHE219 ASP220 PRO221 THR222 ILE223 SER224 LEU225 LYS226 THR227 VAL228 LYS229 LEU230 MET231 LYS232 GLU233 GLY234 LEU235 GLU236 ALA237 ALA238 GLN239 LEU240 LYS241 ALA242 HIS243 LEU244 MET245 SER246 GLN247 PRO248 LEU249 ALA250 TYR251 HIS252 THR253 PRO254 ASP255 CYS256 ASN257 LYS258 GLN259 GLY260 PHE261 ILE262 ASP263 LEU264 PRO265 GLU266 PHE267 PRO268 PHE269 GLY270 LEU271 GLU272 PRO273 ARG274 VAL275 ALA276 THR277 ARG278 TRP279 ASP280 ILE281 GLN282 LYS283 TYR284 ALA285 ARG286 GLU287 ALA288 TYR289 ASN290 LEU291 GLY292 VAL293 ARG294 TYR295 ILE296 GLY297 GLY298 CYS299 CYS300 GLY301 PHE302 GLU303 PRO304 TYR305 HIS306 ILE307 ARG308 ALA309 ILE310 ALA311 GLU312 GLU313 LEU314 ALA315 PRO316 GLU317 ARG318 GLY319 PHE320 LEU321 PRO322 PRO323 ALA324 SER325 GLU326 LYS327 HIS328 GLY329 SER330 TRP331 GLY332 SER333 GLY334 LEU335 ASP336 MET337 HIS338 THR339 LYS340 PRO341 TRP342 VAL343 ARG344 ALA345 ARG346 ALA347 ARG348 LYS349 GLU350 TYR351 TRP352 GLU353 ASN354 LEU355 ARG356 ILE357 ALA358 SER359 GLY360 ARG361 PRO362 TYR363 ASN364 PRO365 SER366 MET367 SER368 LYS369 PRO370 ASP371 GLY372 TRP373 LYS395 GLU396 LEU397 PHE398 GLU399 LYS400 |
Unit 4 | LYS10 LYS11 GLY12 ILE13 LEU14 GLU15 ARG16 LEU17 ASN18 ALA19 GLY20 GLU21 ILE22 VAL23 ILE24 GLY25 ASP26 GLY27 GLY28 PHE29 VAL30 PHE31 ALA32 LEU33 GLU34 LYS35 ARG36 GLY37 TYR38 VAL39 LYS40 ALA41 GLY42 PRO43 TRP44 THR45 PRO46 GLU47 ALA48 ALA49 VAL50 GLU51 HIS52 PRO53 GLU54 ALA55 VAL56 ARG57 GLN58 LEU59 HIS60 ARG61 GLU62 PHE63 LEU64 ARG65 ALA66 GLY67 SER68 ASN69 VAL70 MET71 GLN72 THR73 PHE74 THR75 PHE76 TYR77 SER95 GLY96 GLN97 GLU98 VAL99 ASN100 GLU101 ALA102 ALA103 CYS104 ASP105 ILE106 ALA107 ARG108 GLN109 VAL110 ALA111 ASP112 GLU113 GLY114 ASP115 ALA116 LEU117 VAL118 ALA119 GLY120 GLY121 VAL122 SER123 GLN124 THR125 PRO126 SER127 TYR128 LEU129 SER130 CYS131 LYS132 SER133 GLU134 THR135 GLU136 VAL137 LYS138 LYS139 VAL140 PHE141 LEU142 GLN143 GLN144 LEU145 GLU146 VAL147 PHE148 MET149 LYS150 LYS151 ASN152 VAL153 ASP154 PHE155 LEU156 ILE157 ALA158 GLU159 TYR160 PHE161 GLU162 HIS163 VAL164 GLU165 GLU166 ALA167 VAL168 TRP169 ALA170 VAL171 GLU172 THR173 LEU174 ILE175 ALA176 SER177 GLY178 LYS179 PRO180 VAL181 ALA182 ALA183 THR184 MET185 CYS186 ILE187 GLY188 PRO189 GLU190 GLY191 ASP192 LEU193 HIS194 GLY195 VAL196 PRO197 PRO198 GLY199 GLU200 CYS201 ALA202 VAL203 ARG204 LEU205 VAL206 LYS207 ALA208 GLY209 ALA210 SER211 ILE212 ILE213 GLY214 VAL215 ASN216 CYS217 HIS218 PHE219 ASP220 PRO221 THR222 ILE223 SER224 LEU225 LYS226 THR227 VAL228 LYS229 LEU230 MET231 LYS232 GLU233 GLY234 LEU235 GLU236 ALA237 ALA238 GLN239 LEU240 LYS241 ALA242 HIS243 LEU244 MET245 SER246 GLN247 PRO248 LEU249 ALA250 TYR251 HIS252 THR253 PRO254 ASP255 CYS256 ASN257 LYS258 GLN259 GLY260 PHE261 ILE262 ASP263 LEU264 PRO265 GLU266 PHE267 PRO268 PHE269 GLY270 LEU271 GLU272 PRO273 ARG274 VAL275 ALA276 THR277 ARG278 TRP279 ASP280 ILE281 GLN282 LYS283 TYR284 ALA285 ARG286 GLU287 ALA288 TYR289 ASN290 LEU291 GLY292 VAL293 ARG294 TYR295 ILE296 GLY297 GLY298 CYS299 CYS300 GLY301 PHE302 GLU303 PRO304 TYR305 HIS306 ILE307 ARG308 ALA309 ILE310 ALA311 GLU312 GLU313 LEU314 ALA315 PRO316 GLU317 ARG318 GLY319 PHE320 LEU321 PRO322 PRO323 ALA324 SER325 GLU326 LYS327 HIS328 GLY329 SER330 TRP331 GLY332 SER333 GLY334 LEU335 ASP336 MET337 HIS338 THR339 LYS340 PRO341 TRP342 VAL343 ARG344 ALA345 ARG346 ALA347 ARG348 LYS349 GLU350 TYR351 TRP352 GLU353 ASN354 LEU355 ARG356 ILE357 ALA358 SER359 GLY360 ARG361 PRO362 TYR363 ASN364 PRO365 SER366 MET367 SER368 LYS369 PRO370 ASP371 GLY372 TRP373 ALA380 GLU381 LEU382 MET383 GLN384 GLN385 LYS386 GLU387 ALA388 THR389 THR390 GLU391 GLN392 GLN393 LEU394 LYS395 GLU396 LEU397 PHE398 GLU399 LYS400 GLN401 LYS402 PHE403 |
Unit 5 | ZN701 K702 HCS703 |
Unit 6 | SRT501 ZN502 K503 HCS504 |
Unit 7 | ZN501 K502 HCS503 |
Unit 8 | SRT501 ZN502 K503 HCS504 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |