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Sequence, Chains, Asymmetric and Biological Units

Title X-RAY CRYSTAL STRUCTURE OF THE M6C" RIBOSWITCH APTAMER BOUND AMINOPYRIMIDO[4,5-D]PYRIMIDIN-4(3H)-ONE (PPAO)
Keywords RIBOSWITCH GENE EXPRESSION PLATFORM, RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4LX6     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 71 1502 0
2  Ligand   MUTATED ADENINE RIBOSWITCH APTAMER  A 6 0 17
3 Water     22 0 22
total       99 1502 39

Nucleic acids
Unit 1 G13 G14 C15 U16 U17 C18 A19 U20 A21 U22 A23 A24 U25 C26 C27 G28 A29 A30 U31 G32 A33 U34 A35 U36 G37 G38 U39 U40 U41 C42 G43 G44 A45 G46 C47 U48 U49 C50 C51 A52 C53 C54 A55 A56 G57 A58 G59 C60 C61 U62 U63 A64 A65 A66 C67 U68 C69 U70 U71 G72 A73 C74 U75 A76 U77 G78 A79 A80 G81 U82 C83

Ligands
Unit 2 29H601 MG602 MG603 MG604 MG605 MG606

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany