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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE THF RIBOSWITCH BOUND TO TETRAHYDROBIOPTERIN
Keywords APTAMERS, NUCLEOTIDE, BACILLUS SUBTILIS, BACTERIAL PROTEINS, SEQUENCE, BINDING SITES, CALORIMETRY, FOLIC ACID, GENE EXPR REGULATION, BACTERIAL, GUANINE, LEUCOVORIN, LIGANDS, MAGNES MOLECULAR SEQUENCE DATA, NUCLEIC ACID CONFORMATION, POINT M PROTEIN BINDING, PROTEIN STRUCTURE, SECONDARY, RNA, RIBOSWI ADENOSYLMETHIONINE, STREPTOCOCCUS MUTANS, TERMINATOR REGION GENETIC, TETRAHYDROFOLATES, THERMODYNAMICS, TRANSCRIPTION, JUNCTION, PSEUDOKNOT, REGULATION, NCRNA, TETRAHYDROBIOPTERI BINDING, MRNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4LVX     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 89 1913 0
2  Ligand   THF RIBOSWITCH  A 2 0 34
3 Water     168 0 168
total       259 1913 202

Nucleic acids
Unit 1 G1 G2 A3 G4 A5 G6 U7 A8 G9 A10 U11 G12 A13 U14 U15 C16 G17 C18 G19 U20 U21 A22 A23 G24 U25 G26 U27 G28 U29 G30 U31 G32 A33 A34 U35 G36 G37 G38 A39 U40 G41 U42 C43 G44 U45 C46 A47 C48 A49 C50 A51 A52 C53 G54 A55 A56 G57 C58 G59 A60 G61 A62 G63 C64 G65 C66 G67 G68 U69 G70 A71 A72 U73 C74 A75 U76 U77 G78 C79 A80 U81 C82 C83 G84 C85 U86 C87 C88 A89

Ligands
Unit 2 H4B101 H4B102

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany