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Sequence, Chains, Asymmetric and Biological Units

Title DEVELOPMENT AND PRECLINICAL CHARACTERIZATION OF A HUMANIZED TARGETING CXCL12
Keywords IMMUNOGLOBULIN, CELL ADHESION-IMMUNE SYSTEM COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4LMQ     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   STROMAL CELL-DERIVED FACTOR 1  D 55 449 0
2  Protein   HU30D8 FAB HEAVY CHAIN  E 195 1474 0
3  Protein   STROMAL CELL-DERIVED FACTOR 1  F 58 472 0
4  Protein   HU30D8 FAB HEAVY CHAIN  H 220 1636 0
5  Protein   HU30D8 FAB LIGHT CHAIN  I 214 1654 0
6  Protein   HU30D8 FAB LIGHT CHAIN  L 214 1654 0
7 Water     59 0 59
total       1015 7339 59

Proteins
Unit 1 CYS11 ARG12 PHE13 PHE14 GLU15 SER16 HIS17 VAL18 ALA19 ARG20 ALA21 ASN22 VAL23 LYS24 HIS25 LEU26 LYS27 ILE28 LEU29 ASN30 THR31 PRO32 LEU36 GLN37 ILE38 VAL39 ALA40 ARG41 LEU42 LYS43 ASN44 ASN45 ASN46 ARG47 GLN48 VAL49 CYS50 ILE51 ASP52 PRO53 LYS54 LEU55 LYS56 TRP57 ILE58 GLN59 GLU60 TYR61 LEU62 GLU63 LYS64 ALA65 LEU66 ASN67 LYS68
Unit 2 GLU1 VAL2 GLN3 LEU4 VAL5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 GLN13 PRO14 GLY15 GLY16 SER17 LEU18 ARG19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 SER28 LEU29 THR30 VAL31 TYR32 SER33 VAL34 HIS35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 VAL48 GLY49 ALA50 LEU51 TRP52 GLY53 SER54 GLY55 GLY56 THR57 GLU58 TYR59 ASN60 SER61 ASN62 LEU63 LYS64 SER65 ARG66 PHE67 THR68 ILE69 SER70 ARG71 ASP72 THR73 SER74 LYS75 ASN76 THR77 VAL78 TYR79 LEU80 GLN81 MET82 ASN82A SER82B LEU82C ARG83 ALA84 GLU85 ASP86 THR87 ALA88 VAL89 TYR90 TYR91 CYS92 ALA93 ARG94 ASP95 GLN96 GLY97 LEU98 ASN99 TYR100 GLY100A SER100B LEU100C PHE100D ASP101 TYR102 TRP103 GLY104 GLN105 GLY106 THR107 LEU108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 LYS210 VAL211 GLU212 PRO213
Unit 3 ARG8 CYS9 PRO10 CYS11 ARG12 PHE13 PHE14 GLU15 SER16 HIS17 VAL18 ALA19 ARG20 ALA21 ASN22 VAL23 LYS24 HIS25 LEU26 LYS27 ILE28 LEU29 ASN30 THR31 PRO32 ASN33 CYS34 ALA35 LEU36 GLN37 ILE38 VAL39 ALA40 ARG41 LEU42 LYS43 ASN44 ASN45 ASN46 ARG47 GLN48 VAL49 CYS50 ILE51 ASP52 PRO53 LYS54 LEU55 LYS56 TRP57 ILE58 GLN59 GLU60 TYR61 LEU62 GLU63 LYS64 ALA65
Unit 4 GLU1 VAL2 GLN3 LEU4 VAL5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 GLN13 PRO14 GLY15 GLY16 SER17 LEU18 ARG19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 SER28 LEU29 THR30 VAL31 TYR32 SER33 VAL34 HIS35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 VAL48 GLY49 ALA50 LEU51 TRP52 GLY53 SER54 GLY55 GLY56 THR57 GLU58 TYR59 ASN60 SER61 ASN62 LEU63 LYS64 SER65 ARG66 PHE67 THR68 ILE69 SER70 ARG71 ASP72 THR73 SER74 LYS75 ASN76 THR77 VAL78 TYR79 LEU80 GLN81 MET82 ASN82A SER82B LEU82C ARG83 ALA84 GLU85 ASP86 THR87 ALA88 VAL89 TYR90 TYR91 CYS92 ALA93 ARG94 ASP95 GLN96 GLY97 LEU98 ASN99 TYR100 GLY100A SER100B LEU100C PHE100D ASP101 TYR102 TRP103 GLY104 GLN105 GLY106 THR107 LEU108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER128 LYS129 SER130 THR131 SER132 GLY133 GLY134 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 LEU189 GLY190 THR191 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 LYS210 VAL211 GLU212 PRO213
Unit 5 ASP1 ILE2 GLN3 MET4 THR5 GLN6 SER7 PRO8 SER9 SER10 LEU11 SER12 ALA13 SER14 VAL15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 THR22 CYS23 ARG24 ALA25 SER26 GLU27 SER28 ILE29 SER30 TYR31 SER32 LEU33 SER34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 LYS42 ALA43 PRO44 LYS45 LEU46 LEU47 ILE48 TYR49 ASN50 ALA51 VAL52 LYS53 LEU54 GLU55 SER56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 LEU73 THR74 ILE75 SER76 SER77 LEU78 GLN79 PRO80 GLU81 ASP82 PHE83 ALA84 THR85 TYR86 TYR87 CYS88 LYS89 GLN90 TYR91 TRP92 ASN93 THR94 PRO95 PHE96 THR97 PHE98 GLY99 GLN100 GLY101 THR102 LYS103 VAL104 GLU105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211 GLY212 GLU213 CYS214
Unit 6 ASP1 ILE2 GLN3 MET4 THR5 GLN6 SER7 PRO8 SER9 SER10 LEU11 SER12 ALA13 SER14 VAL15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 THR22 CYS23 ARG24 ALA25 SER26 GLU27 SER28 ILE29 SER30 TYR31 SER32 LEU33 SER34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 LYS42 ALA43 PRO44 LYS45 LEU46 LEU47 ILE48 TYR49 ASN50 ALA51 VAL52 LYS53 LEU54 GLU55 SER56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 LEU73 THR74 ILE75 SER76 SER77 LEU78 GLN79 PRO80 GLU81 ASP82 PHE83 ALA84 THR85 TYR86 TYR87 CYS88 LYS89 GLN90 TYR91 TRP92 ASN93 THR94 PRO95 PHE96 THR97 PHE98 GLY99 GLN100 GLY101 THR102 LYS103 VAL104 GLU105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211 GLY212 GLU213 CYS214

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany