4LLY - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF PERTUZUMAB CLAMBDA FAB WITH VARIABLE AN DOMAIN REDESIGNS (VRD2 AND CRD2) AT 1.6A
• Keywords: FAB, IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4LLY	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	MUTATED PERTUZUMAB FAB HEAVY CHAIN	A	220	1620	0
2	Protein	LIGHT CHAIN CLAMBDA	B	209	1590	0
3	Protein	MUTATED PERTUZUMAB FAB HEAVY CHAIN	C	220	1623	0
4	Protein	LIGHT CHAIN CLAMBDA	D	209	1599	0
5	Ligand	MUTATED PERTUZUMAB FAB HEAVY CHAIN	A	1	0	6
6	Ligand	LIGHT CHAIN CLAMBDA	B	2	0	7
7	Ligand	MUTATED PERTUZUMAB FAB HEAVY CHAIN	C	2	0	12
8	Water			581	0	581
total				1444	6432	606

Proteins

Unit 1	GLU 1 VAL 2 GLN 3 LEU 4 VAL 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 THR 28 PHE 29 THR 30 ASP 31 TYR 32 THR 33 MET 34 ASP 35 TRP 36 VAL 37 ARG 38 LYS 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 ALA 49 ASP 50 VAL 51 ASN 52 PRO 53 ASN 54 SER 55 GLY 56 GLY 57 SER 58 ILE 59 TYR 60 ASN 61 GLN 62 GLU 63 PHE 64 LYS 65 GLY 66 ARG 67 PHE 68 THR 69 LEU 70 SER 71 VAL 72 ASP 73 ARG 74 SER 75 LYS 76 ASN 77 THR 78 LEU 79 TYR 80 LEU 81 GLN 82 MET 83 ASN 84 SER 85 LEU 86 ARG 87 ALA 88 GLU 89 ASP 90 THR 91 ALA 92 VAL 93 TYR 94 TYR 95 CYS 96 ALA 97 ARG 98 ASN 99 LEU 100 GLY 101 PRO 102 SER 103 PHE 104 TYR 105 PHE 106 ASP 107 TYR 108 TRP 109 GLY 110 GLN 111 GLY 112 THR 113 LEU 114 VAL 115 THR 116 VAL 117 SER 118 SER 119 ALA 120 SER 121 THR 122 LYS 123 GLY 124 PRO 125 SER 126 VAL 127 PHE 128 PRO 129 LEU 130 ALA 131 PRO 132 SER 133 SER 134 LYS 135 SER 136 THR 137 SER 138 GLY 139 GLY 140 THR 141 ALA 142 ALA 143 LEU 144 GLY 145 CYS 146 LEU 147 VAL 148 LYS 149 ASP 150 TYR 151 PHE 152 PRO 153 GLU 154 PRO 155 VAL 156 THR 157 VAL 158 SER 159 TRP 160 ASN 161 SER 162 GLY 163 ALA 164 LEU 165 THR 166 SER 167 GLY 168 VAL 169 ALA 170 THR 171 GLY 172 PRO 173 ALA 174 VAL 175 LEU 176 GLN 177 SER 178 SER 179 GLY 180 LEU 181 TYR 182 SER 183 LEU 184 SER 185 SER 186 VAL 187 VAL 188 THR 189 VAL 190 PRO 191 SER 192 SER 193 SER 194 LEU 195 GLY 196 THR 197 GLN 198 THR 199 TYR 200 ILE 201 CYS 202 ASN 203 VAL 204 ASN 205 HIS 206 LYS 207 PRO 208 SER 209 ASN 210 THR 211 LYS 212 VAL 213 ASP 214 LYS 215 LYS 216 VAL 217 GLU 218 PRO 219 LYS 220
Unit 2	ARG 1 ILE 2 GLN 3 MET 4 THR 5 GLN 6 SER 7 PRO 8 SER 9 SER 10 LEU 11 SER 12 ALA 13 SER 14 VAL 15 GLY 16 ASP 17 ARG 18 VAL 19 THR 20 ILE 21 THR 22 CYS 23 LYS 24 ALA 25 SER 26 GLN 27 ASP 28 VAL 29 SER 30 ILE 31 GLY 32 VAL 33 ALA 34 TRP 35 TYR 36 GLN 37 ASP 38 LYS 39 PRO 40 GLY 41 LYS 42 ALA 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 TYR 49 SER 50 ALA 51 SER 52 TYR 53 ARG 54 TYR 55 THR 56 GLY 57 VAL 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 ASP 70 PHE 71 THR 72 LEU 73 THR 74 ILE 75 SER 76 SER 77 LEU 78 GLN 79 PRO 80 GLU 81 ASP 82 PHE 83 ALA 84 THR 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 TYR 91 TYR 92 ILE 93 TYR 94 PRO 95 TYR 96 THR 97 PHE 98 GLY 99 GLN 100 GLY 101 THR 102 LYS 103 VAL 104 GLU 105 ILE 106 LYS 107 GLY 108 GLN 109 PRO 110 LYS 111 ALA 112 ALA 113 PRO 114 SER 115 VAL 116 THR 117 LEU 118 PHE 119 PRO 120 PRO 121 SER 122 SER 123 GLU 124 GLU 125 LEU 126 GLN 127 ALA 128 ASN 129 LYS 130 ALA 131 THR 132 LEU 133 VAL 134 CYS 135 TYR 136 ILE 137 SER 138 ASP 139 PHE 140 TYR 141 PRO 142 GLY 143 ALA 144 VAL 145 THR 146 VAL 147 ALA 148 TRP 149 LYS 150 ALA 151 ASP 152 SER 153 SER 154 PRO 155 VAL 156 LYS 157 ALA 158 GLY 159 VAL 160 GLU 161 THR 162 THR 163 THR 164 PRO 165 SER 166 LYS 167 GLN 168 SER 169 ASN 170 ASN 171 LYS 172 TYR 173 ALA 174 ALA 175 TRP 176 SER 177 TYR 178 LEU 179 SER 180 LEU 181 THR 182 PRO 183 GLU 184 GLN 185 TRP 186 LYS 187 SER 188 HIS 189 ARG 190 SER 191 TYR 192 SER 193 CYS 194 GLN 195 VAL 196 THR 197 HIS 198 GLU 199 GLY 200 SER 201 THR 202 VAL 203 GLU 204 LYS 205 THR 206 VAL 207 ALA 208 PRO 209
Unit 3	GLU 1 VAL 2 GLN 3 LEU 4 VAL 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 THR 28 PHE 29 THR 30 ASP 31 TYR 32 THR 33 MET 34 ASP 35 TRP 36 VAL 37 ARG 38 LYS 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 ALA 49 ASP 50 VAL 51 ASN 52 PRO 53 ASN 54 SER 55 GLY 56 GLY 57 SER 58 ILE 59 TYR 60 ASN 61 GLN 62 GLU 63 PHE 64 LYS 65 GLY 66 ARG 67 PHE 68 THR 69 LEU 70 SER 71 VAL 72 ASP 73 ARG 74 SER 75 LYS 76 ASN 77 THR 78 LEU 79 TYR 80 LEU 81 GLN 82 MET 83 ASN 84 SER 85 LEU 86 ARG 87 ALA 88 GLU 89 ASP 90 THR 91 ALA 92 VAL 93 TYR 94 TYR 95 CYS 96 ALA 97 ARG 98 ASN 99 LEU 100 GLY 101 PRO 102 SER 103 PHE 104 TYR 105 PHE 106 ASP 107 TYR 108 TRP 109 GLY 110 GLN 111 GLY 112 THR 113 LEU 114 VAL 115 THR 116 VAL 117 SER 118 SER 119 ALA 120 SER 121 THR 122 LYS 123 GLY 124 PRO 125 SER 126 VAL 127 PHE 128 PRO 129 LEU 130 ALA 131 PRO 132 SER 133 SER 134 LYS 135 SER 136 THR 137 SER 138 GLY 139 GLY 140 THR 141 ALA 142 ALA 143 LEU 144 GLY 145 CYS 146 LEU 147 VAL 148 LYS 149 ASP 150 TYR 151 PHE 152 PRO 153 GLU 154 PRO 155 VAL 156 THR 157 VAL 158 SER 159 TRP 160 ASN 161 SER 162 GLY 163 ALA 164 LEU 165 THR 166 SER 167 GLY 168 VAL 169 ALA 170 THR 171 GLY 172 PRO 173 ALA 174 VAL 175 LEU 176 GLN 177 SER 178 SER 179 GLY 180 LEU 181 TYR 182 SER 183 LEU 184 SER 185 SER 186 VAL 187 VAL 188 THR 189 VAL 190 PRO 191 SER 192 SER 193 SER 194 LEU 195 GLY 196 THR 197 GLN 198 THR 199 TYR 200 ILE 201 CYS 202 ASN 203 VAL 204 ASN 205 HIS 206 LYS 207 PRO 208 SER 209 ASN 210 THR 211 LYS 212 VAL 213 ASP 214 LYS 215 LYS 216 VAL 217 GLU 218 PRO 219 LYS 220
Unit 4	ARG 1 ILE 2 GLN 3 MET 4 THR 5 GLN 6 SER 7 PRO 8 SER 9 SER 10 LEU 11 SER 12 ALA 13 SER 14 VAL 15 GLY 16 ASP 17 ARG 18 VAL 19 THR 20 ILE 21 THR 22 CYS 23 LYS 24 ALA 25 SER 26 GLN 27 ASP 28 VAL 29 SER 30 ILE 31 GLY 32 VAL 33 ALA 34 TRP 35 TYR 36 GLN 37 ASP 38 LYS 39 PRO 40 GLY 41 LYS 42 ALA 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 TYR 49 SER 50 ALA 51 SER 52 TYR 53 ARG 54 TYR 55 THR 56 GLY 57 VAL 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 ASP 70 PHE 71 THR 72 LEU 73 THR 74 ILE 75 SER 76 SER 77 LEU 78 GLN 79 PRO 80 GLU 81 ASP 82 PHE 83 ALA 84 THR 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 TYR 91 TYR 92 ILE 93 TYR 94 PRO 95 TYR 96 THR 97 PHE 98 GLY 99 GLN 100 GLY 101 THR 102 LYS 103 VAL 104 GLU 105 ILE 106 LYS 107 GLY 108 GLN 109 PRO 110 LYS 111 ALA 112 ALA 113 PRO 114 SER 115 VAL 116 THR 117 LEU 118 PHE 119 PRO 120 PRO 121 SER 122 SER 123 GLU 124 GLU 125 LEU 126 GLN 127 ALA 128 ASN 129 LYS 130 ALA 131 THR 132 LEU 133 VAL 134 CYS 135 TYR 136 ILE 137 SER 138 ASP 139 PHE 140 TYR 141 PRO 142 GLY 143 ALA 144 VAL 145 THR 146 VAL 147 ALA 148 TRP 149 LYS 150 ALA 151 ASP 152 SER 153 SER 154 PRO 155 VAL 156 LYS 157 ALA 158 GLY 159 VAL 160 GLU 161 THR 162 THR 163 THR 164 PRO 165 SER 166 LYS 167 GLN 168 SER 169 ASN 170 ASN 171 LYS 172 TYR 173 ALA 174 ALA 175 TRP 176 SER 177 TYR 178 LEU 179 SER 180 LEU 181 THR 182 PRO 183 GLU 184 GLN 185 TRP 186 LYS 187 SER 188 HIS 189 ARG 190 SER 191 TYR 192 SER 193 CYS 194 GLN 195 VAL 196 THR 197 HIS 198 GLU 199 GLY 200 SER 201 THR 202 VAL 203 GLU 204 LYS 205 THR 206 VAL 207 ALA 208 PRO 209

Ligands

Unit 5	GOL 501
Unit 6	MG 301 GOL 302
Unit 7	GOL 501 GOL 502