Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN UDP-XYLOSE SYNTHASE R236A SUBSTIT
Keywords SHORT-CHAIN DEHYDROGENASE/REDUCTASE, DECARBOXYLASE, LYASE, M ROSSMANN FOLD
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4LK3     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   UDP-GLUCURONIC ACID DECARBOXYLASE 1  A 267 2113 0
2  Protein   UDP-GLUCURONIC ACID DECARBOXYLASE 1  B 274 2156 0
3  Protein   UDP-GLUCURONIC ACID DECARBOXYLASE 1  C 271 2130 0
4  Protein   UDP-GLUCURONIC ACID DECARBOXYLASE 1  D 273 2148 0
5  Protein   UDP-GLUCURONIC ACID DECARBOXYLASE 1  E 269 2118 0
6  Protein   UDP-GLUCURONIC ACID DECARBOXYLASE 1  F 261 2062 0
7  Ligand   UDP-GLUCURONIC ACID DECARBOXYLASE 1  A 5 0 116
8  Ligand   UDP-GLUCURONIC ACID DECARBOXYLASE 1  B 5 0 116
9  Ligand   UDP-GLUCURONIC ACID DECARBOXYLASE 1  C 4 0 95
10  Ligand   UDP-GLUCURONIC ACID DECARBOXYLASE 1  D 5 0 116
11  Ligand   UDP-GLUCURONIC ACID DECARBOXYLASE 1  E 4 0 95
12  Ligand   UDP-GLUCURONIC ACID DECARBOXYLASE 1  F 4 0 95
13 Water     74 0 74
total       1716 12727 707
Proteins
Unit 1 ARG88 LYS89 ARG90 ILE91 LEU92 ILE93 THR94 GLY95 GLY96 ALA97 GLY98 PHE99 VAL100 GLY101 SER102 HIS103 LEU104 THR105 ASP106 LYS107 LEU108 MET109 MET110 ASP111 GLY112 HIS113 GLU114 VAL115 THR116 VAL117 VAL118 ASP119 ASN120 PHE121 PHE122 THR123 GLY124 ARG125 LYS126 ARG127 ASN128 VAL129 GLU130 HIS131 TRP132 ILE133 GLY134 HIS135 GLU136 ASN137 PHE138 GLU139 LEU140 ILE141 ASN142 HIS143 ASP144 VAL145 VAL146 GLU147 PRO148 LEU149 TYR150 ILE151 GLU152 VAL153 ASP154 GLN155 ILE156 TYR157 HIS158 LEU159 ALA160 SER161 PRO162 ALA163 SER164 TYR170 ASN171 PRO172 ILE173 LYS174 THR175 LEU176 LYS177 THR178 ASN179 THR180 ILE181 GLY182 THR183 LEU184 ASN185 MET186 LEU187 GLY188 LEU189 ALA190 LYS191 ARG192 VAL193 GLY194 ALA195 ARG196 LEU197 LEU198 LEU199 ALA200 SER201 THR202 SER203 GLU204 VAL205 TYR206 GLU233 GLY234 LYS235 ALA236 VAL237 ALA238 GLU239 THR240 MET241 CYS242 TYR243 ALA244 TYR245 MET246 LYS247 GLN248 GLU249 GLY250 VAL251 GLU252 VAL253 ARG254 VAL255 ALA256 ARG257 ILE258 PHE259 ASN260 THR261 PHE262 GLY263 PRO264 ARG265 MET266 HIS267 MET268 ASN269 ASP270 GLY271 ARG272 VAL273 VAL274 SER275 ASN276 PHE277 ILE278 LEU279 GLN280 ALA281 LEU282 GLN283 GLY284 GLU285 PRO286 LEU287 THR288 VAL289 TYR290 GLN295 THR296 ARG297 ALA298 PHE299 GLN300 TYR301 VAL302 SER303 ASP304 LEU305 VAL306 ASN307 GLY308 LEU309 VAL310 ALA311 LEU312 MET313 ASN314 SER315 ASN316 VAL317 SER318 SER319 PRO320 VAL321 ASN322 LEU323 GLY324 ASN325 PRO326 GLU327 GLU328 HIS329 THR330 ILE331 LEU332 GLU333 PHE334 ALA335 GLN336 LEU337 ILE338 LYS339 ASN340 LEU341 VAL342 GLY343 SER344 GLY345 SER346 GLU347 ILE348 GLN349 PHE350 ARG361 LYS362 PRO363 ASP364 ILE365 LYS366 LYS367 ALA368 LYS369 LEU370 MET371 LEU372 GLY373 TRP374 GLU375 PRO376 VAL377 VAL378 PRO379 LEU380 GLU381 GLU382 GLY383 LEU384 ASN385 LYS386 ALA387 ILE388 HIS389 TYR390 PHE391 ARG392 LYS393 GLU394 LEU395 GLU396 TYR397 GLN398 ALA399
Unit 2 ARG88 LYS89 ARG90 ILE91 LEU92 ILE93 THR94 GLY95 GLY96 ALA97 GLY98 PHE99 VAL100 GLY101 SER102 HIS103 LEU104 THR105 ASP106 LYS107 LEU108 MET109 MET110 ASP111 GLY112 HIS113 GLU114 VAL115 THR116 VAL117 VAL118 ASP119 ASN120 PHE121 PHE122 THR123 GLY124 ARG125 LYS126 ARG127 ASN128 VAL129 GLU130 HIS131 TRP132 ILE133 GLY134 HIS135 GLU136 ASN137 PHE138 GLU139 LEU140 ILE141 ASN142 HIS143 ASP144 VAL145 VAL146 GLU147 PRO148 LEU149 TYR150 ILE151 GLU152 VAL153 ASP154 GLN155 ILE156 TYR157 HIS158 LEU159 ALA160 SER161 PRO162 ALA163 SER164 PRO165 MET169 TYR170 ASN171 PRO172 ILE173 LYS174 THR175 LEU176 LYS177 THR178 ASN179 THR180 ILE181 GLY182 THR183 LEU184 ASN185 MET186 LEU187 GLY188 LEU189 ALA190 LYS191 ARG192 VAL193 GLY194 ALA195 ARG196 LEU197 LEU198 LEU199 ALA200 SER201 THR202 SER203 GLU204 VAL205 TYR206 GLU233 GLY234 LYS235 ALA236 VAL237 ALA238 GLU239 THR240 MET241 CYS242 TYR243 ALA244 TYR245 MET246 LYS247 GLN248 GLU249 GLY250 VAL251 GLU252 VAL253 ARG254 VAL255 ALA256 ARG257 ILE258 PHE259 ASN260 THR261 PHE262 GLY263 PRO264 ARG265 MET266 HIS267 MET268 ASN269 ASP270 GLY271 ARG272 VAL273 VAL274 SER275 ASN276 PHE277 ILE278 LEU279 GLN280 ALA281 LEU282 GLN283 GLY284 GLU285 PRO286 LEU287 THR288 VAL289 TYR290 GLY291 SER292 GLY293 SER294 GLN295 THR296 ARG297 ALA298 PHE299 GLN300 TYR301 VAL302 SER303 ASP304 LEU305 VAL306 ASN307 GLY308 LEU309 VAL310 ALA311 LEU312 MET313 ASN314 SER315 ASN316 VAL317 SER318 SER319 PRO320 VAL321 ASN322 LEU323 GLY324 ASN325 PRO326 GLU327 GLU328 HIS329 THR330 ILE331 LEU332 GLU333 PHE334 ALA335 GLN336 LEU337 ILE338 LYS339 ASN340 LEU341 VAL342 GLY343 SER344 GLY345 SER346 GLU347 ILE348 GLN349 PHE350 LEU351 ARG361 LYS362 PRO363 ASP364 ILE365 LYS366 LYS367 ALA368 LYS369 LEU370 MET371 LEU372 GLY373 TRP374 GLU375 PRO376 VAL377 VAL378 PRO379 LEU380 GLU381 GLU382 GLY383 LEU384 ASN385 LYS386 ALA387 ILE388 HIS389 TYR390 PHE391 ARG392 LYS393 GLU394 LEU395 GLU396 TYR397 GLN398 ALA399
Unit 3 ARG88 LYS89 ARG90 ILE91 LEU92 ILE93 THR94 GLY95 GLY96 ALA97 GLY98 PHE99 VAL100 GLY101 SER102 HIS103 LEU104 THR105 ASP106 LYS107 LEU108 MET109 MET110 ASP111 GLY112 HIS113 GLU114 VAL115 THR116 VAL117 VAL118 ASP119 ASN120 PHE121 PHE122 THR123 GLY124 ARG125 LYS126 ARG127 ASN128 VAL129 GLU130 HIS131 TRP132 ILE133 GLY134 HIS135 GLU136 ASN137 PHE138 GLU139 LEU140 ILE141 ASN142 HIS143 ASP144 VAL145 VAL146 GLU147 PRO148 LEU149 TYR150 ILE151 GLU152 VAL153 ASP154 GLN155 ILE156 TYR157 HIS158 LEU159 ALA160 SER161 PRO162 ALA163 SER164 TYR170 ASN171 PRO172 ILE173 LYS174 THR175 LEU176 LYS177 THR178 ASN179 THR180 ILE181 GLY182 THR183 LEU184 ASN185 MET186 LEU187 GLY188 LEU189 ALA190 LYS191 ARG192 VAL193 GLY194 ALA195 ARG196 LEU197 LEU198 LEU199 ALA200 SER201 THR202 SER203 GLU204 VAL205 TYR206 GLU233 GLY234 LYS235 ALA236 VAL237 ALA238 GLU239 THR240 MET241 CYS242 TYR243 ALA244 TYR245 MET246 LYS247 GLN248 GLU249 GLY250 VAL251 GLU252 VAL253 ARG254 VAL255 ALA256 ARG257 ILE258 PHE259 ASN260 THR261 PHE262 GLY263 PRO264 ARG265 MET266 HIS267 MET268 ASN269 ASP270 GLY271 ARG272 VAL273 VAL274 SER275 ASN276 PHE277 ILE278 LEU279 GLN280 ALA281 LEU282 GLN283 GLY284 GLU285 PRO286 LEU287 THR288 VAL289 TYR290 GLY291 SER292 GLY293 SER294 GLN295 THR296 ARG297 ALA298 PHE299 GLN300 TYR301 VAL302 SER303 ASP304 LEU305 VAL306 ASN307 GLY308 LEU309 VAL310 ALA311 LEU312 MET313 ASN314 SER315 ASN316 VAL317 SER318 SER319 PRO320 VAL321 ASN322 LEU323 GLY324 ASN325 PRO326 GLU327 GLU328 HIS329 THR330 ILE331 LEU332 GLU333 PHE334 ALA335 GLN336 LEU337 ILE338 LYS339 ASN340 LEU341 VAL342 GLY343 SER344 GLY345 SER346 GLU347 ILE348 GLN349 PHE350 LEU351 LYS362 PRO363 ASP364 ILE365 LYS366 LYS367 ALA368 LYS369 LEU370 MET371 LEU372 GLY373 TRP374 GLU375 PRO376 VAL377 VAL378 PRO379 LEU380 GLU381 GLU382 GLY383 LEU384 ASN385 LYS386 ALA387 ILE388 HIS389 TYR390 PHE391 ARG392 LYS393 GLU394 LEU395 GLU396 TYR397 GLN398 ALA399
Unit 4 ARG88 LYS89 ARG90 ILE91 LEU92 ILE93 THR94 GLY95 GLY96 ALA97 GLY98 PHE99 VAL100 GLY101 SER102 HIS103 LEU104 THR105 ASP106 LYS107 LEU108 MET109 MET110 ASP111 GLY112 HIS113 GLU114 VAL115 THR116 VAL117 VAL118 ASP119 ASN120 PHE121 PHE122 THR123 GLY124 ARG125 LYS126 ARG127 ASN128 VAL129 GLU130 HIS131 TRP132 ILE133 GLY134 HIS135 GLU136 ASN137 PHE138 GLU139 LEU140 ILE141 ASN142 HIS143 ASP144 VAL145 VAL146 GLU147 PRO148 LEU149 TYR150 ILE151 GLU152 VAL153 ASP154 GLN155 ILE156 TYR157 HIS158 LEU159 ALA160 SER161 PRO162 ALA163 SER164 PRO165 TYR170 ASN171 PRO172 ILE173 LYS174 THR175 LEU176 LYS177 THR178 ASN179 THR180 ILE181 GLY182 THR183 LEU184 ASN185 MET186 LEU187 GLY188 LEU189 ALA190 LYS191 ARG192 VAL193 GLY194 ALA195 ARG196 LEU197 LEU198 LEU199 ALA200 SER201 THR202 SER203 GLU204 VAL205 TYR206 GLU233 GLY234 LYS235 ALA236 VAL237 ALA238 GLU239 THR240 MET241 CYS242 TYR243 ALA244 TYR245 MET246 LYS247 GLN248 GLU249 GLY250 VAL251 GLU252 VAL253 ARG254 VAL255 ALA256 ARG257 ILE258 PHE259 ASN260 THR261 PHE262 GLY263 PRO264 ARG265 MET266 HIS267 MET268 ASN269 ASP270 GLY271 ARG272 VAL273 VAL274 SER275 ASN276 PHE277 ILE278 LEU279 GLN280 ALA281 LEU282 GLN283 GLY284 GLU285 PRO286 LEU287 THR288 VAL289 TYR290 GLY291 SER292 GLY293 SER294 GLN295 THR296 ARG297 ALA298 PHE299 GLN300 TYR301 VAL302 SER303 ASP304 LEU305 VAL306 ASN307 GLY308 LEU309 VAL310 ALA311 LEU312 MET313 ASN314 SER315 ASN316 VAL317 SER318 SER319 PRO320 VAL321 ASN322 LEU323 GLY324 ASN325 PRO326 GLU327 GLU328 HIS329 THR330 ILE331 LEU332 GLU333 PHE334 ALA335 GLN336 LEU337 ILE338 LYS339 ASN340 LEU341 VAL342 GLY343 SER344 GLY345 SER346 GLU347 ILE348 GLN349 PHE350 LEU351 ARG361 LYS362 PRO363 ASP364 ILE365 LYS366 LYS367 ALA368 LYS369 LEU370 MET371 LEU372 GLY373 TRP374 GLU375 PRO376 VAL377 VAL378 PRO379 LEU380 GLU381 GLU382 GLY383 LEU384 ASN385 LYS386 ALA387 ILE388 HIS389 TYR390 PHE391 ARG392 LYS393 GLU394 LEU395 GLU396 TYR397 GLN398 ALA399
Unit 5 ARG88 LYS89 ARG90 ILE91 LEU92 ILE93 THR94 GLY95 GLY96 ALA97 GLY98 PHE99 VAL100 GLY101 SER102 HIS103 LEU104 THR105 ASP106 LYS107 LEU108 MET109 MET110 ASP111 GLY112 HIS113 GLU114 VAL115 THR116 VAL117 VAL118 ASP119 ASN120 PHE121 PHE122 THR123 GLY124 ARG125 LYS126 ARG127 ASN128 VAL129 GLU130 HIS131 TRP132 ILE133 GLY134 HIS135 GLU136 ASN137 PHE138 GLU139 LEU140 ILE141 ASN142 HIS143 ASP144 VAL145 VAL146 GLU147 PRO148 LEU149 TYR150 ILE151 GLU152 VAL153 ASP154 GLN155 ILE156 TYR157 HIS158 LEU159 ALA160 SER161 PRO162 ASN171 PRO172 ILE173 LYS174 THR175 LEU176 LYS177 THR178 ASN179 THR180 ILE181 GLY182 THR183 LEU184 ASN185 MET186 LEU187 GLY188 LEU189 ALA190 LYS191 ARG192 VAL193 GLY194 ALA195 ARG196 LEU197 LEU198 LEU199 ALA200 SER201 THR202 SER203 GLU204 VAL205 TYR206 GLU233 GLY234 LYS235 ALA236 VAL237 ALA238 GLU239 THR240 MET241 CYS242 TYR243 ALA244 TYR245 MET246 LYS247 GLN248 GLU249 GLY250 VAL251 GLU252 VAL253 ARG254 VAL255 ALA256 ARG257 ILE258 PHE259 ASN260 THR261 PHE262 GLY263 PRO264 ARG265 MET266 HIS267 MET268 ASN269 ASP270 GLY271 ARG272 VAL273 VAL274 SER275 ASN276 PHE277 ILE278 LEU279 GLN280 ALA281 LEU282 GLN283 GLY284 GLU285 PRO286 LEU287 THR288 VAL289 TYR290 GLY291 SER292 GLY293 SER294 GLN295 THR296 ARG297 ALA298 PHE299 GLN300 TYR301 VAL302 SER303 ASP304 LEU305 VAL306 ASN307 GLY308 LEU309 VAL310 ALA311 LEU312 MET313 ASN314 SER315 ASN316 VAL317 SER318 SER319 PRO320 VAL321 ASN322 LEU323 GLY324 ASN325 PRO326 GLU327 GLU328 HIS329 THR330 ILE331 LEU332 GLU333 PHE334 ALA335 GLN336 LEU337 ILE338 LYS339 ASN340 LEU341 VAL342 GLY343 SER344 GLY345 SER346 GLU347 ILE348 GLN349 PHE350 LEU351 ARG361 LYS362 PRO363 ASP364 ILE365 LYS366 LYS367 ALA368 LYS369 LEU370 MET371 LEU372 GLY373 TRP374 GLU375 PRO376 VAL377 VAL378 PRO379 LEU380 GLU381 GLU382 GLY383 LEU384 ASN385 LYS386 ALA387 ILE388 HIS389 TYR390 PHE391 ARG392 LYS393 GLU394 LEU395 GLU396 TYR397 GLN398 ALA399
Unit 6 ARG88 LYS89 ARG90 ILE91 LEU92 ILE93 THR94 GLY95 GLY96 ALA97 GLY98 PHE99 VAL100 GLY101 SER102 HIS103 LEU104 THR105 ASP106 LYS107 LEU108 MET109 MET110 ASP111 GLY112 HIS113 GLU114 VAL115 THR116 VAL117 VAL118 ASP119 ASN120 PHE121 PHE122 THR123 GLY124 ARG125 LYS126 ARG127 ASN128 VAL129 GLU130 HIS131 TRP132 ILE133 GLY134 HIS135 GLU136 ASN137 PHE138 GLU139 LEU140 ILE141 ASN142 HIS143 ASP144 VAL145 VAL146 GLU147 PRO148 LEU149 TYR150 ILE151 GLU152 VAL153 ASP154 GLN155 ILE156 TYR157 HIS158 LEU159 ALA160 SER161 PRO162 TYR170 ASN171 PRO172 ILE173 LYS174 THR175 LEU176 LYS177 THR178 ASN179 THR180 ILE181 GLY182 THR183 LEU184 ASN185 MET186 LEU187 GLY188 LEU189 ALA190 LYS191 ARG192 VAL193 GLY194 ALA195 ARG196 LEU197 LEU198 LEU199 ALA200 SER201 THR202 SER203 GLU204 VAL205 TYR206 GLU233 GLY234 LYS235 ALA236 VAL237 ALA238 GLU239 THR240 MET241 CYS242 TYR243 ALA244 TYR245 MET246 LYS247 GLN248 GLU249 GLY250 VAL251 GLU252 VAL253 ARG254 VAL255 ALA256 ARG257 ILE258 PHE259 ASN260 THR261 PHE262 GLY263 PRO264 ARG265 MET266 HIS267 MET268 ASN269 ASP270 GLY271 ARG272 VAL273 VAL274 SER275 ASN276 PHE277 ILE278 LEU279 GLN280 ALA281 LEU282 GLN283 GLY284 GLU285 PRO286 LEU287 SER294 GLN295 THR296 ARG297 ALA298 PHE299 GLN300 TYR301 VAL302 SER303 ASP304 LEU305 VAL306 ASN307 GLY308 LEU309 VAL310 ALA311 LEU312 MET313 ASN314 SER315 ASN316 VAL317 SER318 SER319 PRO320 VAL321 ASN322 LEU323 GLY324 ASN325 PRO326 GLU327 GLU328 HIS329 THR330 ILE331 LEU332 GLU333 PHE334 ALA335 GLN336 LEU337 ILE338 LYS339 ASN340 LEU341 VAL342 GLY343 SER344 GLY345 SER346 GLU347 ILE348 ARG361 LYS362 PRO363 ASP364 ILE365 LYS366 LYS367 ALA368 LYS369 LEU370 MET371 LEU372 GLY373 TRP374 GLU375 PRO376 VAL377 VAL378 PRO379 LEU380 GLU381 GLU382 GLY383 LEU384 ASN385 LYS386 ALA387 ILE388 HIS389 TYR390 PHE391 ARG392 LYS393 GLU394 LEU395 GLU396 TYR397 GLN398 ALA399
Ligands
Unit 7 NAD501 UDP502 UGA503 SO4504 SO4505
Unit 8 NAD501 UDP502 UGA503 SO4504 SO4505
Unit 9 NAD501 UGA502 POP503 SO4504
Unit 10 NAD501 UDP502 UGA503 SO4504 SO4505
Unit 11 NAD501 POP502 UGA503 SO4504
Unit 12 NAD501 UGA502 POP503 SO4504
Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany