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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL INSIGHTS INTO THE UNIQUE SINGLE-STRANDED DNA BIND OF DNA PROCESSING PROTEIN A FROM HELICOBACTER PYLORI
Keywords DNA PROCESSG A DOMAIN, ROSSMANN FOLD, SSDNA BINDING, NATURAL RECOMBINATION MEDIATING PROTEIN, SELENIUM DERIVATIVE, DNA B PROTEIN
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4LJK     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA PROCESSING CHAIN A (DPRA)  A 216 1657 32
2  Protein   DNA PROCESSING CHAIN A (DPRA)  B 217 1666 32
3  Protein   DNA PROCESSING CHAIN A (DPRA)  E 216 1657 32
4  Protein   DNA PROCESSING CHAIN A (DPRA)  F 220 1682 40
5  Protein   DNA PROCESSING CHAIN A (DPRA)  H 215 1649 32
6  Protein   DNA PROCESSING CHAIN A (DPRA)  C 216 1657 32
7  Protein   DNA PROCESSING CHAIN A (DPRA)  D 215 1649 32
8  Protein   DNA PROCESSING CHAIN A (DPRA)  G 214 1639 32
9 Water     345 0 345
total       2074 13256 609

Proteins
Unit 1 MSE5 LYS6 SER7 HIS8 PHE9 GLN10 TYR11 SER12 THR13 LEU14 GLU15 ASN16 ILE17 PRO18 LYS19 ALA20 PHE21 ASP22 ILE23 LEU24 LYS25 ASP26 PRO27 PRO28 LYS29 LYS30 LEU31 TYR32 CYS33 VAL34 GLY35 ASP36 THR37 LYS38 LEU39 LEU40 ASP41 THR42 PRO43 LEU44 LYS45 VAL46 ALA47 ILE48 ILE49 GLY50 THR51 ARG52 ARG53 PRO54 THR55 PRO56 TYR57 SER58 LYS59 GLN60 HIS61 THR62 ILE63 THR64 LEU65 ALA66 ARG67 GLU68 LEU69 ALA70 LYS71 ASN72 GLY73 ALA74 VAL75 ILE76 VAL77 SER78 GLY79 GLY80 ALA81 LEU82 GLY83 VAL84 ASP85 ILE86 ILE87 ALA88 GLN89 GLU90 ASN91 ALA92 LEU93 PRO94 LYS95 THR96 ILE97 MSE98 LEU99 SER100 PRO101 CYS102 SER103 LEU104 ASP105 PHE106 ILE107 TYR108 PRO109 THR110 ASN111 ASN112 HIS113 LYS114 VAL115 ILE116 GLN117 GLU118 ILE119 ALA120 GLN121 ASN122 GLY123 LEU124 ILE125 LEU126 SER127 GLU128 TYR129 GLU130 LYS131 ASP132 PHE133 MSE134 PRO135 ILE136 LYS137 GLY138 SER139 PHE140 LEU141 ALA142 ARG143 ASN144 ARG145 LEU146 VAL147 ILE148 ALA149 LEU150 SER151 ASP152 VAL153 VAL154 ILE155 ILE156 PRO157 GLN158 ALA159 ASP160 LEU161 LYS162 SER163 GLY164 SER165 MSE166 SER167 SER168 ALA169 ARG170 LEU171 ALA172 GLN173 LYS174 TYR175 GLN176 LYS177 PRO178 LEU179 PHE180 VAL181 LEU182 PRO183 GLN184 ARG185 LEU186 ASN187 GLU188 SER189 ASP190 GLY191 THR192 ASN193 GLU194 LEU195 LEU196 GLU197 LYS198 GLY199 GLN200 ALA201 GLN202 GLY203 ILE204 PHE205 ASN206 ILE207 GLN208 ASN209 PHE210 ILE211 ASN212 THR213 LEU214 LEU215 LYS216 ASP217 TYR218 HIS219 LEU220
Unit 2 MSE5 LYS6 SER7 HIS8 PHE9 GLN10 TYR11 SER12 THR13 LEU14 GLU15 ASN16 ILE17 PRO18 LYS19 ALA20 PHE21 ASP22 ILE23 LEU24 LYS25 ASP26 PRO27 PRO28 LYS29 LYS30 LEU31 TYR32 CYS33 VAL34 GLY35 ASP36 THR37 LYS38 LEU39 LEU40 ASP41 THR42 PRO43 LEU44 LYS45 VAL46 ALA47 ILE48 ILE49 GLY50 THR51 ARG52 ARG53 PRO54 THR55 PRO56 TYR57 SER58 LYS59 GLN60 HIS61 THR62 ILE63 THR64 LEU65 ALA66 ARG67 GLU68 LEU69 ALA70 LYS71 ASN72 GLY73 ALA74 VAL75 ILE76 VAL77 SER78 GLY79 GLY80 ALA81 LEU82 GLY83 VAL84 ASP85 ILE86 ILE87 ALA88 GLN89 GLU90 ASN91 ALA92 LEU93 PRO94 LYS95 THR96 ILE97 MSE98 LEU99 SER100 PRO101 CYS102 SER103 LEU104 ASP105 PHE106 ILE107 TYR108 PRO109 THR110 ASN111 ASN112 HIS113 LYS114 VAL115 ILE116 GLN117 GLU118 ILE119 ALA120 GLN121 ASN122 GLY123 LEU124 ILE125 LEU126 SER127 GLU128 TYR129 GLU130 LYS131 ASP132 PHE133 MSE134 PRO135 ILE136 LYS137 GLY138 SER139 PHE140 LEU141 ALA142 ARG143 ASN144 ARG145 LEU146 VAL147 ILE148 ALA149 LEU150 SER151 ASP152 VAL153 VAL154 ILE155 ILE156 PRO157 GLN158 ALA159 ASP160 LEU161 LYS162 SER163 GLY164 SER165 MSE166 SER167 SER168 ALA169 ARG170 LEU171 ALA172 GLN173 LYS174 TYR175 GLN176 LYS177 PRO178 LEU179 PHE180 VAL181 LEU182 PRO183 GLN184 ARG185 LEU186 ASN187 GLU188 SER189 ASP190 GLY191 THR192 ASN193 GLU194 LEU195 LEU196 GLU197 LYS198 GLY199 GLN200 ALA201 GLN202 GLY203 ILE204 PHE205 ASN206 ILE207 GLN208 ASN209 PHE210 ILE211 ASN212 THR213 LEU214 LEU215 LYS216 ASP217 TYR218 HIS219 LEU220 LYS221
Unit 3 MSE5 LYS6 SER7 HIS8 PHE9 GLN10 TYR11 SER12 THR13 LEU14 GLU15 ASN16 ILE17 PRO18 LYS19 ALA20 PHE21 ASP22 ILE23 LEU24 LYS25 ASP26 PRO27 PRO28 LYS29 LYS30 LEU31 TYR32 CYS33 VAL34 GLY35 ASP36 THR37 LYS38 LEU39 LEU40 ASP41 THR42 PRO43 LEU44 LYS45 VAL46 ALA47 ILE48 ILE49 GLY50 THR51 ARG52 ARG53 PRO54 THR55 PRO56 TYR57 SER58 LYS59 GLN60 HIS61 THR62 ILE63 THR64 LEU65 ALA66 ARG67 GLU68 LEU69 ALA70 LYS71 ASN72 GLY73 ALA74 VAL75 ILE76 VAL77 SER78 GLY79 GLY80 ALA81 LEU82 GLY83 VAL84 ASP85 ILE86 ILE87 ALA88 GLN89 GLU90 ASN91 ALA92 LEU93 PRO94 LYS95 THR96 ILE97 MSE98 LEU99 SER100 PRO101 CYS102 SER103 LEU104 ASP105 PHE106 ILE107 TYR108 PRO109 THR110 ASN111 ASN112 HIS113 LYS114 VAL115 ILE116 GLN117 GLU118 ILE119 ALA120 GLN121 ASN122 GLY123 LEU124 ILE125 LEU126 SER127 GLU128 TYR129 GLU130 LYS131 ASP132 PHE133 MSE134 PRO135 ILE136 LYS137 GLY138 SER139 PHE140 LEU141 ALA142 ARG143 ASN144 ARG145 LEU146 VAL147 ILE148 ALA149 LEU150 SER151 ASP152 VAL153 VAL154 ILE155 ILE156 PRO157 GLN158 ALA159 ASP160 LEU161 LYS162 SER163 GLY164 SER165 MSE166 SER167 SER168 ALA169 ARG170 LEU171 ALA172 GLN173 LYS174 TYR175 GLN176 LYS177 PRO178 LEU179 PHE180 VAL181 LEU182 PRO183 GLN184 ARG185 LEU186 ASN187 GLU188 SER189 ASP190 GLY191 THR192 ASN193 GLU194 LEU195 LEU196 GLU197 LYS198 GLY199 GLN200 ALA201 GLN202 GLY203 ILE204 PHE205 ASN206 ILE207 GLN208 ASN209 PHE210 ILE211 ASN212 THR213 LEU214 LEU215 LYS216 ASP217 TYR218 HIS219 LEU220
Unit 4 MSE5 LYS6 SER7 HIS8 PHE9 GLN10 TYR11 SER12 THR13 LEU14 GLU15 ASN16 ILE17 PRO18 LYS19 ALA20 PHE21 ASP22 ILE23 LEU24 LYS25 ASP26 PRO27 PRO28 LYS29 LYS30 LEU31 TYR32 CYS33 VAL34 GLY35 ASP36 THR37 LYS38 LEU39 LEU40 ASP41 THR42 PRO43 LEU44 LYS45 VAL46 ALA47 ILE48 ILE49 GLY50 THR51 ARG52 ARG53 PRO54 THR55 PRO56 TYR57 SER58 LYS59 GLN60 HIS61 THR62 ILE63 THR64 LEU65 ALA66 ARG67 GLU68 LEU69 ALA70 LYS71 ASN72 GLY73 ALA74 VAL75 ILE76 VAL77 SER78 GLY79 GLY80 ALA81 LEU82 GLY83 VAL84 ASP85 ILE86 ILE87 ALA88 GLN89 GLU90 ASN91 ALA92 LEU93 PRO94 LYS95 THR96 ILE97 MSE98 LEU99 SER100 PRO101 CYS102 SER103 LEU104 ASP105 PHE106 ILE107 TYR108 PRO109 THR110 ASN111 ASN112 HIS113 LYS114 VAL115 ILE116 GLN117 GLU118 ILE119 ALA120 GLN121 ASN122 GLY123 LEU124 ILE125 LEU126 SER127 GLU128 TYR129 GLU130 LYS131 ASP132 PHE133 MSE134 PRO135 ILE136 LYS137 GLY138 SER139 PHE140 LEU141 ALA142 ARG143 ASN144 ARG145 LEU146 VAL147 ILE148 ALA149 LEU150 SER151 ASP152 VAL153 VAL154 ILE155 ILE156 PRO157 GLN158 ALA159 ASP160 LEU161 LYS162 SER163 GLY164 SER165 MSE166 SER167 SER168 ALA169 ARG170 LEU171 ALA172 GLN173 LYS174 TYR175 GLN176 LYS177 PRO178 LEU179 PHE180 VAL181 LEU182 PRO183 GLN184 ARG185 LEU186 ASN187 GLU188 SER189 ASP190 GLY191 THR192 ASN193 GLU194 LEU195 LEU196 GLU197 LYS198 GLY199 GLN200 ALA201 GLN202 GLY203 ILE204 PHE205 ASN206 ILE207 GLN208 ASN209 PHE210 ILE211 ASN212 THR213 LEU214 LEU215 LYS216 ASP217 TYR218 HIS219 LEU220 LYS221 GLU222 MSE223 PRO224
Unit 5 MSE5 LYS6 SER7 HIS8 PHE9 GLN10 TYR11 SER12 THR13 LEU14 GLU15 ASN16 ILE17 PRO18 LYS19 ALA20 PHE21 ASP22 ILE23 LEU24 LYS25 ASP26 PRO27 PRO28 LYS29 LYS30 LEU31 TYR32 CYS33 VAL34 GLY35 ASP36 THR37 LYS38 LEU39 LEU40 ASP41 THR42 PRO43 LEU44 LYS45 VAL46 ALA47 ILE48 ILE49 GLY50 THR51 ARG52 ARG53 PRO54 THR55 PRO56 TYR57 SER58 LYS59 GLN60 HIS61 THR62 ILE63 THR64 LEU65 ALA66 ARG67 GLU68 LEU69 ALA70 LYS71 ASN72 GLY73 ALA74 VAL75 ILE76 VAL77 SER78 GLY79 GLY80 ALA81 LEU82 GLY83 VAL84 ASP85 ILE86 ILE87 ALA88 GLN89 GLU90 ASN91 ALA92 LEU93 PRO94 LYS95 THR96 ILE97 MSE98 LEU99 SER100 PRO101 CYS102 SER103 LEU104 ASP105 PHE106 ILE107 TYR108 PRO109 THR110 ASN111 ASN112 HIS113 LYS114 VAL115 ILE116 GLN117 GLU118 ILE119 ALA120 GLN121 ASN122 GLY123 LEU124 ILE125 LEU126 SER127 GLU128 TYR129 GLU130 LYS131 ASP132 PHE133 MSE134 PRO135 ILE136 LYS137 GLY138 SER139 PHE140 LEU141 ALA142 ARG143 ASN144 ARG145 LEU146 VAL147 ILE148 ALA149 LEU150 SER151 ASP152 VAL153 VAL154 ILE155 ILE156 PRO157 GLN158 ALA159 ASP160 LEU161 LYS162 SER163 GLY164 SER165 MSE166 SER167 SER168 ALA169 ARG170 LEU171 ALA172 GLN173 LYS174 TYR175 GLN176 LYS177 PRO178 LEU179 PHE180 VAL181 LEU182 PRO183 GLN184 ARG185 LEU186 ASN187 GLU188 SER189 ASP190 GLY191 THR192 ASN193 GLU194 LEU195 LEU196 GLU197 LYS198 GLY199 GLN200 ALA201 GLN202 GLY203 ILE204 PHE205 ASN206 ILE207 GLN208 ASN209 PHE210 ILE211 ASN212 THR213 LEU214 LEU215 LYS216 ASP217 TYR218 HIS219
Unit 6 MSE5 LYS6 SER7 HIS8 PHE9 GLN10 TYR11 SER12 THR13 LEU14 GLU15 ASN16 ILE17 PRO18 LYS19 ALA20 PHE21 ASP22 ILE23 LEU24 LYS25 ASP26 PRO27 PRO28 LYS29 LYS30 LEU31 TYR32 CYS33 VAL34 GLY35 ASP36 THR37 LYS38 LEU39 LEU40 ASP41 THR42 PRO43 LEU44 LYS45 VAL46 ALA47 ILE48 ILE49 GLY50 THR51 ARG52 ARG53 PRO54 THR55 PRO56 TYR57 SER58 LYS59 GLN60 HIS61 THR62 ILE63 THR64 LEU65 ALA66 ARG67 GLU68 LEU69 ALA70 LYS71 ASN72 GLY73 ALA74 VAL75 ILE76 VAL77 SER78 GLY79 GLY80 ALA81 LEU82 GLY83 VAL84 ASP85 ILE86 ILE87 ALA88 GLN89 GLU90 ASN91 ALA92 LEU93 PRO94 LYS95 THR96 ILE97 MSE98 LEU99 SER100 PRO101 CYS102 SER103 LEU104 ASP105 PHE106 ILE107 TYR108 PRO109 THR110 ASN111 ASN112 HIS113 LYS114 VAL115 ILE116 GLN117 GLU118 ILE119 ALA120 GLN121 ASN122 GLY123 LEU124 ILE125 LEU126 SER127 GLU128 TYR129 GLU130 LYS131 ASP132 PHE133 MSE134 PRO135 ILE136 LYS137 GLY138 SER139 PHE140 LEU141 ALA142 ARG143 ASN144 ARG145 LEU146 VAL147 ILE148 ALA149 LEU150 SER151 ASP152 VAL153 VAL154 ILE155 ILE156 PRO157 GLN158 ALA159 ASP160 LEU161 LYS162 SER163 GLY164 SER165 MSE166 SER167 SER168 ALA169 ARG170 LEU171 ALA172 GLN173 LYS174 TYR175 GLN176 LYS177 PRO178 LEU179 PHE180 VAL181 LEU182 PRO183 GLN184 ARG185 LEU186 ASN187 GLU188 SER189 ASP190 GLY191 THR192 ASN193 GLU194 LEU195 LEU196 GLU197 LYS198 GLY199 GLN200 ALA201 GLN202 GLY203 ILE204 PHE205 ASN206 ILE207 GLN208 ASN209 PHE210 ILE211 ASN212 THR213 LEU214 LEU215 LYS216 ASP217 TYR218 HIS219 LEU220
Unit 7 MSE5 LYS6 SER7 HIS8 PHE9 GLN10 TYR11 SER12 THR13 LEU14 GLU15 ASN16 ILE17 PRO18 LYS19 ALA20 PHE21 ASP22 ILE23 LEU24 LYS25 ASP26 PRO27 PRO28 LYS29 LYS30 LEU31 TYR32 CYS33 VAL34 GLY35 ASP36 THR37 LYS38 LEU39 LEU40 ASP41 THR42 PRO43 LEU44 LYS45 VAL46 ALA47 ILE48 ILE49 GLY50 THR51 ARG52 ARG53 PRO54 THR55 PRO56 TYR57 SER58 LYS59 GLN60 HIS61 THR62 ILE63 THR64 LEU65 ALA66 ARG67 GLU68 LEU69 ALA70 LYS71 ASN72 GLY73 ALA74 VAL75 ILE76 VAL77 SER78 GLY79 GLY80 ALA81 LEU82 GLY83 VAL84 ASP85 ILE86 ILE87 ALA88 GLN89 GLU90 ASN91 ALA92 LEU93 PRO94 LYS95 THR96 ILE97 MSE98 LEU99 SER100 PRO101 CYS102 SER103 LEU104 ASP105 PHE106 ILE107 TYR108 PRO109 THR110 ASN111 ASN112 HIS113 LYS114 VAL115 ILE116 GLN117 GLU118 ILE119 ALA120 GLN121 ASN122 GLY123 LEU124 ILE125 LEU126 SER127 GLU128 TYR129 GLU130 LYS131 ASP132 PHE133 MSE134 PRO135 ILE136 LYS137 GLY138 SER139 PHE140 LEU141 ALA142 ARG143 ASN144 ARG145 LEU146 VAL147 ILE148 ALA149 LEU150 SER151 ASP152 VAL153 VAL154 ILE155 ILE156 PRO157 GLN158 ALA159 ASP160 LEU161 LYS162 SER163 GLY164 SER165 MSE166 SER167 SER168 ALA169 ARG170 LEU171 ALA172 GLN173 LYS174 TYR175 GLN176 LYS177 PRO178 LEU179 PHE180 VAL181 LEU182 PRO183 GLN184 ARG185 LEU186 ASN187 GLU188 SER189 ASP190 GLY191 THR192 ASN193 GLU194 LEU195 LEU196 GLU197 LYS198 GLY199 GLN200 ALA201 GLN202 GLY203 ILE204 PHE205 ASN206 ILE207 GLN208 ASN209 PHE210 ILE211 ASN212 THR213 LEU214 LEU215 LYS216 ASP217 TYR218 HIS219
Unit 8 MSE5 LYS6 SER7 HIS8 PHE9 GLN10 TYR11 SER12 THR13 LEU14 GLU15 ASN16 ILE17 PRO18 LYS19 ALA20 PHE21 ASP22 ILE23 LEU24 LYS25 ASP26 PRO27 PRO28 LYS29 LYS30 LEU31 TYR32 CYS33 VAL34 GLY35 ASP36 THR37 LYS38 LEU39 LEU40 ASP41 THR42 PRO43 LEU44 LYS45 VAL46 ALA47 ILE48 ILE49 GLY50 THR51 ARG52 ARG53 PRO54 THR55 PRO56 TYR57 SER58 LYS59 GLN60 HIS61 THR62 ILE63 THR64 LEU65 ALA66 ARG67 GLU68 LEU69 ALA70 LYS71 ASN72 GLY73 ALA74 VAL75 ILE76 VAL77 SER78 GLY79 GLY80 ALA81 LEU82 GLY83 VAL84 ASP85 ILE86 ILE87 ALA88 GLN89 GLU90 ASN91 ALA92 LEU93 PRO94 LYS95 THR96 ILE97 MSE98 LEU99 SER100 PRO101 CYS102 SER103 LEU104 ASP105 PHE106 ILE107 TYR108 PRO109 THR110 ASN111 ASN112 HIS113 LYS114 VAL115 ILE116 GLN117 GLU118 ILE119 ALA120 GLN121 ASN122 GLY123 LEU124 ILE125 LEU126 SER127 GLU128 TYR129 GLU130 LYS131 ASP132 PHE133 MSE134 PRO135 ILE136 LYS137 GLY138 SER139 PHE140 LEU141 ALA142 ARG143 ASN144 ARG145 LEU146 VAL147 ILE148 ALA149 LEU150 SER151 ASP152 VAL153 VAL154 ILE155 ILE156 PRO157 GLN158 ALA159 ASP160 LEU161 LYS162 SER163 GLY164 SER165 MSE166 SER167 SER168 ALA169 ARG170 LEU171 ALA172 GLN173 LYS174 TYR175 GLN176 LYS177 PRO178 LEU179 PHE180 VAL181 LEU182 PRO183 GLN184 ARG185 LEU186 ASN187 GLU188 SER189 ASP190 GLY191 THR192 ASN193 GLU194 LEU195 LEU196 GLU197 LYS198 GLY199 GLN200 ALA201 GLN202 GLY203 ILE204 PHE205 ASN206 ILE207 GLN208 ASN209 PHE210 ILE211 ASN212 THR213 LEU214 LEU215 LYS216 ASP217 TYR218

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany