4LDT - Sequence, Chains, Asymmetric and Biological Units

• Title: THE STRUCTURE OF H/CEOTUB1-UBIQUITIN ALDEHYDE-UBCH5B~UB
• Keywords: ISOPEPTIDASE, UBIQUITIN-CONJUGATING, POST-TRANSLATIONAL MODI UBIQUITIN, UBIQUITIN-ALDEHYDE, HYDROLASE REGULATOR
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4LDT	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	UBIQUITIN THIOESTERASE OTUBAIN-LIKE	A	255	2030	0
2	Protein	UBIQUITIN ALDEHYDE	B	76	589	4
3	Protein	UBIQUITIN-CONJUGATING ENZYME E2 D2	C	148	1158	0
4	Protein	UBIQUITIN	D	76	581	0
5	Ligand	UBIQUITIN THIOESTERASE OTUBAIN-LIKE	A	3	0	12
6	Ligand	UBIQUITIN ALDEHYDE	B	1	0	1
7	Ligand	UBIQUITIN-CONJUGATING ENZYME E2 D2	C	1	0	4
8	Water			316	0	316
total				876	4358	337

Proteins

Unit 1	CYS 19 LEU 20 ALA 21 TYR 22 ASP 23 GLU 24 ALA 25 ILE 26 MET 27 ALA 28 GLN 29 GLN 30 ASP 31 ARG 32 ILE 33 GLN 34 GLN 35 GLU 36 ILE 37 ALA 38 VAL 39 GLN 40 ASN 41 PRO 42 LEU 43 VAL 44 ALA 45 THR 46 LEU 47 ALA 48 PRO 49 PHE 50 SER 51 ILE 52 LEU 53 CYS 54 ALA 55 GLU 56 TYR 57 ASP 58 ASN 59 GLU 60 THR 61 SER 62 ALA 63 ALA 64 PHE 65 LEU 66 SER 67 LYS 68 ALA 69 THR 70 GLU 71 LEU 72 SER 73 GLU 74 VAL 75 TYR 76 GLY 77 GLU 78 ILE 79 ARG 80 TYR 81 ILE 82 ARG 83 GLY 84 ASP 85 GLY 86 ASN 87 CYS 88 PHE 89 TYR 90 ARG 91 ALA 92 ILE 93 LEU 94 VAL 95 GLY 96 LEU 97 ILE 98 GLU 99 ILE 100 MET 101 LEU 102 LYS 103 ASP 104 ARG 105 ALA 106 ARG 107 LEU 108 GLU 109 LYS 110 PHE 111 ILE 112 ALA 113 SER 114 SER 115 ARG 116 ASP 117 TRP 118 THR 119 ARG 120 THR 121 LEU 122 VAL 123 GLU 124 LEU 125 GLY 126 PHE 127 PRO 128 ASP 129 TRP 130 THR 131 CYS 132 THR 133 ASP 134 PHE 135 CYS 136 ASP 137 PHE 138 PHE 139 ILE 140 GLU 141 PHE 142 LEU 143 GLU 144 LYS 145 ILE 146 HIS 147 SER 148 GLY 149 VAL 150 HIS 151 THR 152 GLU 153 GLU 154 ALA 155 VAL 156 TYR 157 THR 158 ILE 159 LEU 160 ASN 161 ASP 162 ASP 163 GLY 164 SER 165 ALA 166 ASN 167 TYR 168 ILE 169 LEU 170 MET 171 PHE 172 PHE 173 ARG 174 LEU 175 ILE 176 THR 177 SER 178 ALA 179 PHE 180 LEU 181 LYS 182 GLN 183 ASN 184 SER 185 GLU 186 GLU 187 TYR 188 ALA 189 PRO 190 PHE 191 ILE 192 ASP 193 GLU 194 GLY 195 MET 196 THR 197 VAL 198 ALA 199 GLN 200 TYR 201 CYS 202 GLU 203 GLN 204 GLU 205 ILE 206 GLU 207 PRO 208 MET 209 TRP 210 LYS 211 ASP 212 ALA 213 ASP 214 HIS 215 LEU 216 ALA 217 ILE 218 ASN 219 SER 220 LEU 221 ILE 222 LYS 223 ALA 224 ALA 225 GLY 226 THR 227 ARG 228 VAL 229 ARG 230 ILE 231 GLU 232 TYR 233 MET 234 ASP 235 ARG 236 THR 237 ALA 238 ALA 239 PRO 240 ASN 241 GLY 242 GLY 243 TRP 244 HIS 245 TYR 246 ASP 247 ILE 248 PRO 249 SER 250 ASP 251 GLN 254 ILE 255 ALA 256 PRO 257 GLU 258 ILE 259 THR 260 LEU 261 LEU 262 TYR 263 ARG 264 PRO 265 GLY 266 HIS 267 TYR 268 ASP 269 VAL 270 ILE 271 TYR 272 LYS 273 LYS 274 ASP 275
Unit 2	MET 1 GLN 2 ILE 3 PHE 4 VAL 5 LYS 6 THR 7 LEU 8 THR 9 GLY 10 LYS 11 THR 12 ILE 13 THR 14 LEU 15 GLU 16 VAL 17 GLU 18 PRO 19 SER 20 ASP 21 THR 22 ILE 23 GLU 24 ASN 25 VAL 26 LYS 27 ALA 28 LYS 29 ILE 30 GLN 31 ASP 32 LYS 33 GLU 34 GLY 35 ILE 36 PRO 37 PRO 38 ASP 39 GLN 40 GLN 41 ARG 42 LEU 43 ILE 44 PHE 45 ALA 46 GLY 47 LYS 48 GLN 49 LEU 50 GLU 51 ASP 52 GLY 53 ARG 54 THR 55 LEU 56 SER 57 ASP 58 TYR 59 ASN 60 ILE 61 GLN 62 LYS 63 GLU 64 SER 65 THR 66 LEU 67 HIS 68 LEU 69 VAL 70 LEU 71 ARG 72 LEU 73 ARG 74 GLY 75 GLZ 76
Unit 3	GLY 0 MET 1 ALA 2 LEU 3 LYS 4 ARG 5 ILE 6 HIS 7 LYS 8 GLU 9 LEU 10 ASN 11 ASP 12 LEU 13 ALA 14 ARG 15 ASP 16 PRO 17 PRO 18 ALA 19 GLN 20 CYS 21 SER 22 ALA 23 GLY 24 PRO 25 VAL 26 GLY 27 ASP 28 ASP 29 MET 30 PHE 31 HIS 32 TRP 33 GLN 34 ALA 35 THR 36 ILE 37 MET 38 GLY 39 PRO 40 ASN 41 ASP 42 SER 43 PRO 44 TYR 45 GLN 46 GLY 47 GLY 48 VAL 49 PHE 50 PHE 51 LEU 52 THR 53 ILE 54 HIS 55 PHE 56 PRO 57 THR 58 ASP 59 TYR 60 PRO 61 PHE 62 LYS 63 PRO 64 PRO 65 LYS 66 VAL 67 ALA 68 PHE 69 THR 70 THR 71 ARG 72 ILE 73 TYR 74 HIS 75 PRO 76 ASN 77 ILE 78 ASN 79 SER 80 ASN 81 GLY 82 SER 83 ILE 84 SER 85 LEU 86 ASP 87 ILE 88 LEU 89 ARG 90 SER 91 GLN 92 TRP 93 SER 94 PRO 95 ALA 96 LEU 97 THR 98 ILE 99 SER 100 LYS 101 VAL 102 LEU 103 LEU 104 SER 105 ILE 106 CYS 107 SER 108 LEU 109 LEU 110 CYS 111 ASP 112 PRO 113 ASN 114 PRO 115 ASP 116 ASP 117 PRO 118 LEU 119 VAL 120 PRO 121 GLU 122 ILE 123 ALA 124 ARG 125 ILE 126 TYR 127 LYS 128 THR 129 ASP 130 ARG 131 GLU 132 LYS 133 TYR 134 ASN 135 ARG 136 ILE 137 ALA 138 ARG 139 GLU 140 TRP 141 THR 142 GLN 143 LYS 144 TYR 145 ALA 146 MET 147
Unit 4	MET 1 GLN 2 ILE 3 PHE 4 VAL 5 LYS 6 THR 7 LEU 8 THR 9 GLY 10 LYS 11 THR 12 ILE 13 THR 14 LEU 15 GLU 16 VAL 17 GLU 18 PRO 19 SER 20 ASP 21 THR 22 ILE 23 GLU 24 ASN 25 VAL 26 LYS 27 ALA 28 LYS 29 ILE 30 GLN 31 ASP 32 LYS 33 GLU 34 GLY 35 ILE 36 PRO 37 PRO 38 ASP 39 GLN 40 GLN 41 ARG 42 LEU 43 ILE 44 PHE 45 ALA 46 GLY 47 LYS 48 GLN 49 LEU 50 GLU 51 ASP 52 GLY 53 ARG 54 THR 55 LEU 56 SER 57 ASP 58 TYR 59 ASN 60 ILE 61 GLN 62 LYS 63 GLU 64 SER 65 THR 66 LEU 67 HIS 68 LEU 69 VAL 70 LEU 71 ARG 72 LEU 73 ARG 74 GLY 75 GLY 76

Ligands

Unit 5	EDO 301 EDO 302 EDO 303
Unit 6	MG 101
Unit 7	EDO 201