4LD9 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE N-TERMINALLY ACETYLATED BAH DOMAIN BOUND TO THE NUCLEOSOME CORE PARTICLE
• Keywords: BETA BARREL, PROTEIN-DNA COMPLEX, DOUBLE HELIX, ALPHA-HELIX, SHEET, DOUBLE STRANDED DNA, CHROMATIN BINDING, CHROMATIN, N ACETYLATION, NUCLEUS, NUCLEAR PROTEIN-TRANSCRIPTION-DNA COM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4LD9	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	HISTONE H3.2	A	97	799	0
2	Protein	HISTONE H4	B	89	716	0
3	Protein	HISTONE H2A	C	98	753	0
4	Protein	HISTONE H2B 1.1	D	86	673	0
5	Protein	HISTONE H3.2	E	90	729	0
6	Protein	HISTONE H4	F	83	674	0
7	Protein	HISTONE H2A	G	100	768	0
8	Protein	HISTONE H2B 1.1	H	88	690	0
9	Other macromolecule	WIDOM 601 SEQUENCE REVERSE	I	143	2946	0
10	Other macromolecule	WIDOM 601 SEQUENCE FORWARD	J	142	2895	0
11	Protein	REGULATORY PROTEIN SIR3	K	211	1758	3
12	Protein	REGULATORY PROTEIN SIR3	L	206	1733	3
total				1433	15134	6

Proteins

Unit 1	LYS 37 PRO 38 HIS 39 ARG 40 TYR 41 ARG 42 PRO 43 GLY 44 THR 45 VAL 46 ALA 47 LEU 48 ARG 49 GLU 50 ILE 51 ARG 52 ARG 53 TYR 54 GLN 55 LYS 56 SER 57 THR 58 GLU 59 LEU 60 LEU 61 ILE 62 ARG 63 LYS 64 LEU 65 PRO 66 PHE 67 GLN 68 ARG 69 LEU 70 VAL 71 ARG 72 GLU 73 ILE 74 ALA 75 GLN 76 ASP 77 PHE 78 LYS 79 THR 80 ASP 81 LEU 82 ARG 83 PHE 84 GLN 85 SER 86 SER 87 ALA 88 VAL 89 MET 90 ALA 91 LEU 92 GLN 93 GLU 94 ALA 95 SER 96 GLU 97 ALA 98 TYR 99 LEU 100 VAL 101 GLY 102 LEU 103 PHE 104 GLU 105 ASP 106 THR 107 ASN 108 LEU 109 CYS 110 ALA 111 ILE 112 HIS 113 ALA 114 LYS 115 ARG 116 VAL 117 THR 118 ILE 119 MET 120 PRO 121 LYS 122 ASP 123 ILE 124 GLN 125 LEU 126 ALA 127 ARG 128 ARG 129 ILE 130 ARG 131 GLY 132 GLU 133
Unit 2	LYS 12 GLY 13 GLY 14 ALA 15 LYS 16 ARG 17 HIS 18 ARG 19 LYS 20 VAL 21 LEU 22 ARG 23 ASP 24 ASN 25 ILE 26 GLN 27 GLY 28 ILE 29 THR 30 LYS 31 PRO 32 ALA 33 ILE 34 ARG 35 ARG 36 LEU 37 ALA 38 ARG 39 ARG 40 GLY 41 GLY 42 VAL 43 LYS 44 ARG 45 ILE 46 SER 47 GLY 48 LEU 49 ILE 50 TYR 51 GLU 52 GLU 53 THR 54 ARG 55 GLY 56 VAL 57 LEU 58 LYS 59 VAL 60 PHE 61 LEU 62 GLU 63 ASN 64 VAL 65 ILE 66 ARG 67 ASP 68 ALA 69 VAL 70 THR 71 TYR 72 THR 73 GLU 74 HIS 75 ALA 76 LYS 77 ARG 78 LYS 79 THR 80 VAL 81 THR 82 ALA 83 MET 84 ASP 85 VAL 86 VAL 87 TYR 88 ALA 89 LEU 90 LYS 91 ARG 92 GLN 93 GLY 94 ARG 95 THR 96 LEU 97 TYR 98 GLY 99 PHE 100
Unit 3	ARG 20 ALA 21 GLY 22 LEU 23 GLN 24 PHE 25 PRO 26 VAL 27 GLY 28 ARG 29 VAL 30 HIS 31 ARG 32 LEU 33 LEU 34 ARG 35 LYS 36 GLY 37 ASN 38 TYR 39 ALA 40 GLU 41 ARG 42 VAL 43 GLY 44 ALA 45 GLY 46 ALA 47 PRO 48 VAL 49 TYR 50 LEU 51 ALA 52 ALA 53 VAL 54 LEU 55 GLU 56 TYR 57 LEU 58 THR 59 ALA 60 GLU 61 ILE 62 LEU 63 GLU 64 LEU 65 ALA 66 GLY 67 ASN 68 ALA 69 ALA 70 ARG 71 ASP 72 ASN 73 LYS 74 LYS 75 THR 76 ARG 77 ILE 78 ILE 79 PRO 80 ARG 81 HIS 82 LEU 83 GLN 84 LEU 85 ALA 86 VAL 87 ARG 88 ASN 89 ASP 90 GLU 91 GLU 92 LEU 93 ASN 94 LYS 95 LEU 96 LEU 97 GLY 98 ARG 99 VAL 100 THR 101 ILE 102 ALA 103 GLN 104 GLY 105 GLY 106 VAL 107 LEU 108 PRO 109 ASN 110 ILE 111 GLN 112 SER 113 VAL 114 LEU 115 LEU 116 PRO 117
Unit 4	TYR 38 ALA 39 ILE 40 TYR 41 VAL 42 TYR 43 LYS 44 VAL 45 LEU 46 LYS 47 GLN 48 VAL 49 HIS 50 PRO 51 ASP 52 THR 53 GLY 54 ILE 55 SER 56 SER 57 LYS 58 ALA 59 MET 60 SER 61 ILE 62 MET 63 ASN 64 SER 65 PHE 66 VAL 67 ASN 68 ASP 69 VAL 70 PHE 71 GLU 72 ARG 73 ILE 74 ALA 75 GLY 76 GLU 77 ALA 78 SER 79 ARG 80 LEU 81 ALA 82 HIS 83 TYR 84 ASN 85 LYS 86 ARG 87 SER 88 THR 89 ILE 90 THR 91 SER 92 ARG 93 GLU 94 ILE 95 GLN 96 THR 97 ALA 98 VAL 99 ARG 100 LEU 101 LEU 102 LEU 103 PRO 104 GLY 105 GLU 106 LEU 107 ALA 108 LYS 109 HIS 110 ALA 111 VAL 112 SER 113 GLU 114 GLY 115 THR 116 LYS 117 ALA 118 VAL 119 THR 120 LYS 121 TYR 122 THR 123
Unit 5	GLY 44 THR 45 VAL 46 ALA 47 LEU 48 ARG 49 GLU 50 ILE 51 ARG 52 ARG 53 TYR 54 GLN 55 LYS 56 SER 57 THR 58 GLU 59 LEU 60 LEU 61 ILE 62 ARG 63 LYS 64 LEU 65 PRO 66 PHE 67 GLN 68 ARG 69 LEU 70 VAL 71 ARG 72 GLU 73 ILE 74 ALA 75 GLN 76 ASP 77 PHE 78 LYS 79 THR 80 ASP 81 LEU 82 ARG 83 PHE 84 GLN 85 SER 86 SER 87 ALA 88 VAL 89 MET 90 ALA 91 LEU 92 GLN 93 GLU 94 ALA 95 SER 96 GLU 97 ALA 98 TYR 99 LEU 100 VAL 101 GLY 102 LEU 103 PHE 104 GLU 105 ASP 106 THR 107 ASN 108 LEU 109 CYS 110 ALA 111 ILE 112 HIS 113 ALA 114 LYS 115 ARG 116 VAL 117 THR 118 ILE 119 MET 120 PRO 121 LYS 122 ASP 123 ILE 124 GLN 125 LEU 126 ALA 127 ARG 128 ARG 129 ILE 130 ARG 131 GLY 132 GLU 133
Unit 6	HIS 18 ARG 19 LYS 20 VAL 21 LEU 22 ARG 23 ASP 24 ASN 25 ILE 26 GLN 27 GLY 28 ILE 29 THR 30 LYS 31 PRO 32 ALA 33 ILE 34 ARG 35 ARG 36 LEU 37 ALA 38 ARG 39 ARG 40 GLY 41 GLY 42 VAL 43 LYS 44 ARG 45 ILE 46 SER 47 GLY 48 LEU 49 ILE 50 TYR 51 GLU 52 GLU 53 THR 54 ARG 55 GLY 56 VAL 57 LEU 58 LYS 59 VAL 60 PHE 61 LEU 62 GLU 63 ASN 64 VAL 65 ILE 66 ARG 67 ASP 68 ALA 69 VAL 70 THR 71 TYR 72 THR 73 GLU 74 HIS 75 ALA 76 LYS 77 ARG 78 LYS 79 THR 80 VAL 81 THR 82 ALA 83 MET 84 ASP 85 VAL 86 VAL 87 TYR 88 ALA 89 LEU 90 LYS 91 ARG 92 GLN 93 GLY 94 ARG 95 THR 96 LEU 97 TYR 98 GLY 99 PHE 100
Unit 7	SER 18 SER 19 ARG 20 ALA 21 GLY 22 LEU 23 GLN 24 PHE 25 PRO 26 VAL 27 GLY 28 ARG 29 VAL 30 HIS 31 ARG 32 LEU 33 LEU 34 ARG 35 LYS 36 GLY 37 ASN 38 TYR 39 ALA 40 GLU 41 ARG 42 VAL 43 GLY 44 ALA 45 GLY 46 ALA 47 PRO 48 VAL 49 TYR 50 LEU 51 ALA 52 ALA 53 VAL 54 LEU 55 GLU 56 TYR 57 LEU 58 THR 59 ALA 60 GLU 61 ILE 62 LEU 63 GLU 64 LEU 65 ALA 66 GLY 67 ASN 68 ALA 69 ALA 70 ARG 71 ASP 72 ASN 73 LYS 74 LYS 75 THR 76 ARG 77 ILE 78 ILE 79 PRO 80 ARG 81 HIS 82 LEU 83 GLN 84 LEU 85 ALA 86 VAL 87 ARG 88 ASN 89 ASP 90 GLU 91 GLU 92 LEU 93 ASN 94 LYS 95 LEU 96 LEU 97 GLY 98 ARG 99 VAL 100 THR 101 ILE 102 ALA 103 GLN 104 GLY 105 GLY 106 VAL 107 LEU 108 PRO 109 ASN 110 ILE 111 GLN 112 SER 113 VAL 114 LEU 115 LEU 116 PRO 117
Unit 8	LYS 35 GLU 36 SER 37 TYR 38 ALA 39 ILE 40 TYR 41 VAL 42 TYR 43 LYS 44 VAL 45 LEU 46 LYS 47 GLN 48 VAL 49 HIS 50 PRO 51 ASP 52 THR 53 GLY 54 ILE 55 SER 56 SER 57 LYS 58 ALA 59 MET 60 SER 61 ILE 62 MET 63 ASN 64 SER 65 PHE 66 VAL 67 ASN 68 ASP 69 VAL 70 PHE 71 GLU 72 ARG 73 ILE 74 ALA 75 GLY 76 GLU 77 ALA 78 SER 79 ARG 80 LEU 81 ALA 82 HIS 83 TYR 84 ASN 85 LYS 86 ARG 87 SER 88 THR 89 ILE 90 THR 91 SER 92 ARG 93 GLU 94 ILE 95 GLN 96 THR 97 ALA 98 VAL 99 ARG 100 LEU 101 LEU 102 LEU 103 PRO 104 GLY 105 GLU 106 LEU 107 ALA 108 LYS 109 HIS 110 ALA 111 VAL 112 SER 113 GLU 114 GLY 115 THR 116 LYS 117 ALA 118 VAL 119 THR 120 LYS 121 TYR 122
Unit 11	ACE 1 ALA 2 LYS 3 THR 4 LEU 5 LYS 6 ASP 7 LEU 8 ASP 9 GLY 10 TRP 11 GLN 12 VAL 13 ILE 14 ILE 15 THR 16 ASP 17 ASP 18 GLN 19 GLY 20 ARG 21 VAL 22 ILE 23 ASP 24 ASP 25 ASN 26 ASN 27 ARG 28 ARG 29 ARG 30 ARG 34 GLY 35 GLY 36 GLU 37 ASN 38 VAL 39 PHE 40 LEU 41 LYS 42 ARG 43 ILE 44 SER 45 ASP 46 GLY 47 LEU 48 SER 49 PHE 50 GLY 51 LYS 52 GLY 53 GLU 54 SER 55 VAL 56 ILE 57 PHE 58 ASN 59 ASP 60 ASN 61 VAL 62 THR 63 GLU 64 THR 65 TYR 66 SER 67 VAL 68 TYR 69 LEU 70 ILE 71 HIS 72 GLU 73 ILE 74 ARG 75 LEU 76 ASN 77 THR 78 LEU 79 ASN 80 ASN 81 VAL 82 VAL 83 GLU 84 ILE 85 TRP 86 VAL 87 PHE 88 SER 89 TYR 90 LEU 91 ARG 92 TRP 93 PHE 94 GLU 95 LEU 96 LYS 97 PRO 98 LYS 99 LEU 100 TYR 101 TYR 102 GLU 103 GLN 104 PHE 105 ARG 106 PRO 107 ASP 108 LEU 109 ILE 110 LYS 111 GLU 112 ASP 113 HIS 114 PRO 115 LEU 116 GLU 117 PHE 118 TYR 119 LYS 120 ASP 121 LYS 122 PHE 123 PHE 124 ASN 125 GLU 126 VAL 127 ASN 128 LYS 129 SER 130 GLU 131 LEU 132 TYR 133 LEU 134 THR 135 ALA 136 GLU 137 LEU 138 SER 139 GLU 140 ILE 141 TRP 142 LEU 143 LYS 144 ASP 145 PHE 146 ILE 147 ALA 148 VAL 149 GLY 150 GLN 151 ILE 152 LEU 153 PRO 154 GLU 155 SER 156 GLN 157 TRP 158 ASN 159 ASP 160 SER 161 SER 162 ILE 163 LYS 165 ILE 166 GLU 167 ASP 168 ARG 169 ASP 170 PHE 171 LEU 172 VAL 173 ARG 174 TYR 175 ALA 176 CYS 177 GLU 178 PRO 179 THR 180 ALA 181 GLU 182 LYS 183 PHE 184 VAL 185 PRO 186 ILE 187 ASP 188 ILE 189 PHE 190 GLN 191 ILE 192 ILE 193 ARG 194 ARG 195 VAL 196 LYS 197 GLU 198 MET 199 GLU 200 PRO 201 LYS 202 GLN 203 SER 204 ASP 205 GLU 206 TYR 207 LEU 208 LYS 209 ARG 210 VAL 211 SER 212 VAL 213 PRO 214 VAL 215
Unit 12	ACE 1 ALA 2 LYS 3 THR 4 LEU 5 LYS 6 ASP 7 LEU 8 ASP 9 GLY 10 TRP 11 GLN 12 VAL 13 ILE 14 ILE 15 THR 16 ASP 17 ASP 18 GLN 19 GLY 20 ARG 21 VAL 22 ILE 23 ASP 24 ASP 25 ASN 26 ASN 27 ARG 28 ARG 29 GLU 37 ASN 38 VAL 39 PHE 40 LEU 41 LYS 42 ARG 43 ILE 44 SER 45 ASP 46 GLY 47 LEU 48 SER 49 PHE 50 GLY 51 LYS 52 GLY 53 GLU 54 SER 55 VAL 56 ILE 57 PHE 58 ASN 59 ASP 60 ASN 61 VAL 62 THR 63 GLU 64 THR 65 TYR 66 SER 67 VAL 68 TYR 69 LEU 70 ILE 71 HIS 72 GLU 73 ILE 74 ARG 75 LEU 76 ASN 77 THR 78 LEU 79 ASN 80 ASN 81 VAL 82 VAL 83 GLU 84 ILE 85 TRP 86 VAL 87 PHE 88 SER 89 TYR 90 LEU 91 ARG 92 TRP 93 PHE 94 GLU 95 LEU 96 LYS 97 PRO 98 LYS 99 LEU 100 TYR 101 TYR 102 GLU 103 GLN 104 PHE 105 ARG 106 PRO 107 ASP 108 LEU 109 ILE 110 LYS 111 GLU 112 ASP 113 HIS 114 PRO 115 LEU 116 GLU 117 PHE 118 TYR 119 LYS 120 ASP 121 LYS 122 PHE 123 PHE 124 ASN 125 GLU 126 VAL 127 ASN 128 LYS 129 SER 130 GLU 131 LEU 132 TYR 133 LEU 134 THR 135 ALA 136 GLU 137 LEU 138 SER 139 GLU 140 ILE 141 TRP 142 LEU 143 LYS 144 ASP 145 PHE 146 ILE 147 ALA 148 VAL 149 GLY 150 GLN 151 ILE 152 LEU 153 PRO 154 GLU 155 SER 156 GLN 157 TRP 158 ASN 159 ASP 160 SER 161 SER 162 ILE 163 ASP 164 LYS 165 ILE 166 GLU 167 ASP 168 ARG 169 ASP 170 PHE 171 LEU 172 VAL 173 ARG 174 TYR 175 ALA 176 CYS 177 GLU 178 PRO 179 THR 180 ALA 181 GLU 182 LYS 183 PHE 184 VAL 185 PRO 186 ILE 187 ASP 188 ILE 189 PHE 190 GLN 191 ILE 192 ILE 193 ARG 194 ARG 195 VAL 196 LYS 197 GLU 198 MET 199 GLU 200 PRO 201 LYS 202 GLN 203 SER 204 ASP 205 GLU 206 TYR 207 LEU 208 LYS 209 ARG 210 VAL 211 SER 212 VAL 213

Other macromolecules

Unit 9

DA -72 DT -71 DC -70 DG -69 DA -68 DT -67 DG -66 DT -65 DA -64 DT -63 DA -62 DT -61 DA -60 DT -59 DC -58 DT -57 DG -56 DA -55 DC -54 DA -53 DC -52 DG -51 DT -50 DG -49 DC -48 DC -47 DT -46 DG -45 DG -44 DA -43 DG -42 DA -41 DC -40 DT -39 DA -38 DG -37 DG -36 DG -35 DA -34 DG -33 DT -32 DA -31 DA -30 DT -29 DC -28 DC -27 DC -26 DC -25 DT -24 DT -23 DG -22 DG -21 DC -20 DG -19 DG -18 DT -17 DT -16 DA -15 DA -14 DA -13 DA -12 DC -11 DG -10 DC -9 DG -8 DG -7 DG -6 DG -5 DG -4 DA -3 DC -2 DA -1 DG 0 DC 1 DG 2 DC 3 DG 4 DT 5 DA 6 DC 7 DG 8 DT 9 DG 10 DC 11 DG 12 DT 13 DT 14 DT 15 DA 16 DA 17 DG 18 DC 19 DG 20 DG 21 DT 22 DG 23 DC 24 DT 25 DA 26 DG 27 DA 28 DG 29 DC 30 DT 31 DG 32 DT 33 DC 34 DT 35 DA 36 DC 37 DG 38 DA 39 DC 40 DC 41 DA 42 DA 43 DT 44 DT 45 DG 46 DA 47 DG 48 DC 49 DG 50 DG 51 DC 52 DC 53 DT 54 DC 55 DG 56 DG 57 DC 58 DA 59 DC 60 DC 61 DG 62 DG 63 DG 64 DA 65 DT 66 DT 67 DC 68 DT 69 DG 70

Unit 10

DA -69 DG -68 DA -67 DA -66 DT -65 DC -64 DC -63 DC -62 DG -61 DG -60 DT -59 DG -58 DC -57 DC -56 DG -55 DA -54 DG -53 DG -52 DC -51 DC -50 DG -49 DC -48 DT -47 DC -46 DA -45 DA -44 DT -43 DT -42 DG -41 DG -40 DT -39 DC -38 DG -37 DT -36 DA -35 DG -34 DA -33 DC -32 DA -31 DG -30 DC -29 DT -28 DC -27 DT -26 DA -25 DG -24 DC -23 DA -22 DC -21 DC -20 DG -19 DC -18 DT -17 DT -16 DA -15 DA -14 DA -13 DC -12 DG -11 DC -10 DA -9 DC -8 DG -7 DT -6 DA -5 DC -4 DG -3 DC -2 DG -1 DC 0 DT 1 DG 2 DT 3 DC 4 DC 5 DC 6 DC 7 DC 8 DG 9 DC 10 DG 11 DT 12 DT 13 DT 14 DT 15 DA 16 DA 17 DC 18 DC 19 DG 20 DC 21 DC 22 DA 23 DA 24 DG 25 DG 26 DG 27 DG 28 DA 29 DT 30 DT 31 DA 32 DC 33 DT 34 DC 35 DC 36 DC 37 DT 38 DA 39 DG 40 DT 41 DC 42 DT 43 DC 44 DC 45 DA 46 DG 47 DG 48 DC 49 DA 50 DC 51 DG 52 DT 53 DG 54 DT 55 DC 56 DA 57 DG 58 DA 59 DT 60 DA 61 DT 62 DA 63 DT 64 DA 65 DC 66 DA 67 DT 68 DC 69 DG 70 DA 71 DT 72