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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF RHODOBACTER SPHAEROIDES MALYL-COA LYASE COMPLEX WITH MAGNESIUM, OXALATE, AND COA
Keywords TIM BARREL, LYASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4L9Z     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MALYL-COA LYASE  A 313 2376 0
2  Protein   MALYL-COA LYASE  B 314 2382 0
3  Protein   MALYL-COA LYASE  C 314 2382 0
4  Protein   MALYL-COA LYASE  D 314 2382 0
5  Protein   MALYL-COA LYASE  E 313 2376 0
6  Protein   MALYL-COA LYASE  F 313 2376 0
7  Ligand   MALYL-COA LYASE  A 3 0 55
8  Ligand   MALYL-COA LYASE  B 3 0 55
9  Ligand   MALYL-COA LYASE  C 3 0 55
10  Ligand   MALYL-COA LYASE  D 3 0 55
11  Ligand   MALYL-COA LYASE  E 3 0 55
12  Ligand   MALYL-COA LYASE  F 3 0 55
13 Water     2526 0 2526
total       4425 14274 2856
Proteins
Unit 1 PHE3 ARG4 LEU5 GLN6 PRO7 ALA8 PRO9 PRO10 ALA11 ARG12 PRO13 ASN14 ARG15 CYS16 GLN17 LEU18 PHE19 GLY20 PRO21 GLY22 SER23 ARG24 PRO25 ALA26 LEU27 PHE28 GLU29 LYS30 MET31 ALA32 ALA33 SER34 ALA35 ALA36 ASP37 VAL38 ILE39 ASN40 LEU41 ASP42 LEU43 GLU44 ASP45 SER46 VAL47 ALA48 PRO49 ASP50 ASP51 LYS52 ALA53 GLN54 ALA55 ARG56 ALA57 ASN58 ILE59 ILE60 GLU61 ALA62 ILE63 ASN64 GLY65 LEU66 ASP67 TRP68 GLY69 ARG70 LYS71 TYR72 LEU73 SER74 VAL75 ARG76 ILE77 ASN78 GLY79 LEU80 ASP81 THR82 PRO83 PHE84 TRP85 TYR86 ARG87 ASP88 VAL89 VAL90 ASP91 LEU92 LEU93 GLU94 GLN95 ALA96 GLY97 ASP98 ARG99 LEU100 ASP101 GLN102 ILE103 MET104 ILE105 PRO106 LYS107 VAL108 GLY109 CYS110 ALA111 ALA112 ASP113 VAL114 TYR115 ALA116 VAL117 ASP118 ALA119 LEU120 VAL121 THR122 ALA123 ILE124 GLU125 ARG126 ALA127 LYS128 GLY129 ARG130 THR131 LYS132 PRO133 LEU134 SER135 PHE136 GLU137 VAL138 ILE139 ILE140 GLU141 SER142 ALA143 ALA144 GLY145 ILE146 ALA147 HIS148 VAL149 GLU150 GLU151 ILE152 ALA153 ALA154 SER155 SER156 PRO157 ARG158 LEU159 GLN160 ALA161 MET162 SER163 LEU164 GLY165 ALA166 ALA167 ASP168 PHE169 ALA170 ALA171 SER172 MET173 GLY174 MET175 GLN176 THR177 THR178 GLY179 ILE180 GLY181 GLY182 THR183 GLN184 GLU185 ASN186 TYR187 TYR188 MET189 LEU190 HIS191 ASP192 GLY193 GLN194 LYS195 HIS196 TRP197 SER198 ASP199 PRO200 TRP201 HIS202 TRP203 ALA204 GLN205 ALA206 ALA207 ILE208 VAL209 ALA210 ALA211 CYS212 ARG213 THR214 HIS215 GLY216 ILE217 LEU218 PRO219 VAL220 ASP221 GLY222 PRO223 PHE224 GLY225 ASP226 PHE227 SER228 ASP229 ASP230 GLU231 GLY232 PHE233 ARG234 ALA235 GLN236 ALA237 ARG238 ARG239 SER240 ALA241 THR242 LEU243 GLY244 MET245 VAL246 GLY247 LYS248 TRP249 ALA250 ILE251 HIS252 PRO253 LYS254 GLN255 VAL256 ALA257 LEU258 ALA259 ASN260 GLU261 VAL262 PHE263 THR264 PRO265 SER266 GLU267 THR268 ALA269 VAL270 THR271 GLU272 ALA273 ARG274 GLU275 ILE276 LEU277 ALA278 ALA279 MET280 ASP281 ALA282 ALA283 LYS284 ALA285 ARG286 GLY287 GLU288 GLY289 ALA290 THR291 VAL292 TYR293 LYS294 GLY295 ARG296 LEU297 VAL298 ASP299 ILE300 ALA301 SER302 ILE303 LYS304 GLN305 ALA306 GLU307 VAL308 ILE309 VAL310 ARG311 GLN312 ALA313 GLU314 MET315
Unit 2 SER2 PHE3 ARG4 LEU5 GLN6 PRO7 ALA8 PRO9 PRO10 ALA11 ARG12 PRO13 ASN14 ARG15 CYS16 GLN17 LEU18 PHE19 GLY20 PRO21 GLY22 SER23 ARG24 PRO25 ALA26 LEU27 PHE28 GLU29 LYS30 MET31 ALA32 ALA33 SER34 ALA35 ALA36 ASP37 VAL38 ILE39 ASN40 LEU41 ASP42 LEU43 GLU44 ASP45 SER46 VAL47 ALA48 PRO49 ASP50 ASP51 LYS52 ALA53 GLN54 ALA55 ARG56 ALA57 ASN58 ILE59 ILE60 GLU61 ALA62 ILE63 ASN64 GLY65 LEU66 ASP67 TRP68 GLY69 ARG70 LYS71 TYR72 LEU73 SER74 VAL75 ARG76 ILE77 ASN78 GLY79 LEU80 ASP81 THR82 PRO83 PHE84 TRP85 TYR86 ARG87 ASP88 VAL89 VAL90 ASP91 LEU92 LEU93 GLU94 GLN95 ALA96 GLY97 ASP98 ARG99 LEU100 ASP101 GLN102 ILE103 MET104 ILE105 PRO106 LYS107 VAL108 GLY109 CYS110 ALA111 ALA112 ASP113 VAL114 TYR115 ALA116 VAL117 ASP118 ALA119 LEU120 VAL121 THR122 ALA123 ILE124 GLU125 ARG126 ALA127 LYS128 GLY129 ARG130 THR131 LYS132 PRO133 LEU134 SER135 PHE136 GLU137 VAL138 ILE139 ILE140 GLU141 SER142 ALA143 ALA144 GLY145 ILE146 ALA147 HIS148 VAL149 GLU150 GLU151 ILE152 ALA153 ALA154 SER155 SER156 PRO157 ARG158 LEU159 GLN160 ALA161 MET162 SER163 LEU164 GLY165 ALA166 ALA167 ASP168 PHE169 ALA170 ALA171 SER172 MET173 GLY174 MET175 GLN176 THR177 THR178 GLY179 ILE180 GLY181 GLY182 THR183 GLN184 GLU185 ASN186 TYR187 TYR188 MET189 LEU190 HIS191 ASP192 GLY193 GLN194 LYS195 HIS196 TRP197 SER198 ASP199 PRO200 TRP201 HIS202 TRP203 ALA204 GLN205 ALA206 ALA207 ILE208 VAL209 ALA210 ALA211 CYS212 ARG213 THR214 HIS215 GLY216 ILE217 LEU218 PRO219 VAL220 ASP221 GLY222 PRO223 PHE224 GLY225 ASP226 PHE227 SER228 ASP229 ASP230 GLU231 GLY232 PHE233 ARG234 ALA235 GLN236 ALA237 ARG238 ARG239 SER240 ALA241 THR242 LEU243 GLY244 MET245 VAL246 GLY247 LYS248 TRP249 ALA250 ILE251 HIS252 PRO253 LYS254 GLN255 VAL256 ALA257 LEU258 ALA259 ASN260 GLU261 VAL262 PHE263 THR264 PRO265 SER266 GLU267 THR268 ALA269 VAL270 THR271 GLU272 ALA273 ARG274 GLU275 ILE276 LEU277 ALA278 ALA279 MET280 ASP281 ALA282 ALA283 LYS284 ALA285 ARG286 GLY287 GLU288 GLY289 ALA290 THR291 VAL292 TYR293 LYS294 GLY295 ARG296 LEU297 VAL298 ASP299 ILE300 ALA301 SER302 ILE303 LYS304 GLN305 ALA306 GLU307 VAL308 ILE309 VAL310 ARG311 GLN312 ALA313 GLU314 MET315
Unit 3 SER2 PHE3 ARG4 LEU5 GLN6 PRO7 ALA8 PRO9 PRO10 ALA11 ARG12 PRO13 ASN14 ARG15 CYS16 GLN17 LEU18 PHE19 GLY20 PRO21 GLY22 SER23 ARG24 PRO25 ALA26 LEU27 PHE28 GLU29 LYS30 MET31 ALA32 ALA33 SER34 ALA35 ALA36 ASP37 VAL38 ILE39 ASN40 LEU41 ASP42 LEU43 GLU44 ASP45 SER46 VAL47 ALA48 PRO49 ASP50 ASP51 LYS52 ALA53 GLN54 ALA55 ARG56 ALA57 ASN58 ILE59 ILE60 GLU61 ALA62 ILE63 ASN64 GLY65 LEU66 ASP67 TRP68 GLY69 ARG70 LYS71 TYR72 LEU73 SER74 VAL75 ARG76 ILE77 ASN78 GLY79 LEU80 ASP81 THR82 PRO83 PHE84 TRP85 TYR86 ARG87 ASP88 VAL89 VAL90 ASP91 LEU92 LEU93 GLU94 GLN95 ALA96 GLY97 ASP98 ARG99 LEU100 ASP101 GLN102 ILE103 MET104 ILE105 PRO106 LYS107 VAL108 GLY109 CYS110 ALA111 ALA112 ASP113 VAL114 TYR115 ALA116 VAL117 ASP118 ALA119 LEU120 VAL121 THR122 ALA123 ILE124 GLU125 ARG126 ALA127 LYS128 GLY129 ARG130 THR131 LYS132 PRO133 LEU134 SER135 PHE136 GLU137 VAL138 ILE139 ILE140 GLU141 SER142 ALA143 ALA144 GLY145 ILE146 ALA147 HIS148 VAL149 GLU150 GLU151 ILE152 ALA153 ALA154 SER155 SER156 PRO157 ARG158 LEU159 GLN160 ALA161 MET162 SER163 LEU164 GLY165 ALA166 ALA167 ASP168 PHE169 ALA170 ALA171 SER172 MET173 GLY174 MET175 GLN176 THR177 THR178 GLY179 ILE180 GLY181 GLY182 THR183 GLN184 GLU185 ASN186 TYR187 TYR188 MET189 LEU190 HIS191 ASP192 GLY193 GLN194 LYS195 HIS196 TRP197 SER198 ASP199 PRO200 TRP201 HIS202 TRP203 ALA204 GLN205 ALA206 ALA207 ILE208 VAL209 ALA210 ALA211 CYS212 ARG213 THR214 HIS215 GLY216 ILE217 LEU218 PRO219 VAL220 ASP221 GLY222 PRO223 PHE224 GLY225 ASP226 PHE227 SER228 ASP229 ASP230 GLU231 GLY232 PHE233 ARG234 ALA235 GLN236 ALA237 ARG238 ARG239 SER240 ALA241 THR242 LEU243 GLY244 MET245 VAL246 GLY247 LYS248 TRP249 ALA250 ILE251 HIS252 PRO253 LYS254 GLN255 VAL256 ALA257 LEU258 ALA259 ASN260 GLU261 VAL262 PHE263 THR264 PRO265 SER266 GLU267 THR268 ALA269 VAL270 THR271 GLU272 ALA273 ARG274 GLU275 ILE276 LEU277 ALA278 ALA279 MET280 ASP281 ALA282 ALA283 LYS284 ALA285 ARG286 GLY287 GLU288 GLY289 ALA290 THR291 VAL292 TYR293 LYS294 GLY295 ARG296 LEU297 VAL298 ASP299 ILE300 ALA301 SER302 ILE303 LYS304 GLN305 ALA306 GLU307 VAL308 ILE309 VAL310 ARG311 GLN312 ALA313 GLU314 MET315
Unit 4 SER2 PHE3 ARG4 LEU5 GLN6 PRO7 ALA8 PRO9 PRO10 ALA11 ARG12 PRO13 ASN14 ARG15 CYS16 GLN17 LEU18 PHE19 GLY20 PRO21 GLY22 SER23 ARG24 PRO25 ALA26 LEU27 PHE28 GLU29 LYS30 MET31 ALA32 ALA33 SER34 ALA35 ALA36 ASP37 VAL38 ILE39 ASN40 LEU41 ASP42 LEU43 GLU44 ASP45 SER46 VAL47 ALA48 PRO49 ASP50 ASP51 LYS52 ALA53 GLN54 ALA55 ARG56 ALA57 ASN58 ILE59 ILE60 GLU61 ALA62 ILE63 ASN64 GLY65 LEU66 ASP67 TRP68 GLY69 ARG70 LYS71 TYR72 LEU73 SER74 VAL75 ARG76 ILE77 ASN78 GLY79 LEU80 ASP81 THR82 PRO83 PHE84 TRP85 TYR86 ARG87 ASP88 VAL89 VAL90 ASP91 LEU92 LEU93 GLU94 GLN95 ALA96 GLY97 ASP98 ARG99 LEU100 ASP101 GLN102 ILE103 MET104 ILE105 PRO106 LYS107 VAL108 GLY109 CYS110 ALA111 ALA112 ASP113 VAL114 TYR115 ALA116 VAL117 ASP118 ALA119 LEU120 VAL121 THR122 ALA123 ILE124 GLU125 ARG126 ALA127 LYS128 GLY129 ARG130 THR131 LYS132 PRO133 LEU134 SER135 PHE136 GLU137 VAL138 ILE139 ILE140 GLU141 SER142 ALA143 ALA144 GLY145 ILE146 ALA147 HIS148 VAL149 GLU150 GLU151 ILE152 ALA153 ALA154 SER155 SER156 PRO157 ARG158 LEU159 GLN160 ALA161 MET162 SER163 LEU164 GLY165 ALA166 ALA167 ASP168 PHE169 ALA170 ALA171 SER172 MET173 GLY174 MET175 GLN176 THR177 THR178 GLY179 ILE180 GLY181 GLY182 THR183 GLN184 GLU185 ASN186 TYR187 TYR188 MET189 LEU190 HIS191 ASP192 GLY193 GLN194 LYS195 HIS196 TRP197 SER198 ASP199 PRO200 TRP201 HIS202 TRP203 ALA204 GLN205 ALA206 ALA207 ILE208 VAL209 ALA210 ALA211 CYS212 ARG213 THR214 HIS215 GLY216 ILE217 LEU218 PRO219 VAL220 ASP221 GLY222 PRO223 PHE224 GLY225 ASP226 PHE227 SER228 ASP229 ASP230 GLU231 GLY232 PHE233 ARG234 ALA235 GLN236 ALA237 ARG238 ARG239 SER240 ALA241 THR242 LEU243 GLY244 MET245 VAL246 GLY247 LYS248 TRP249 ALA250 ILE251 HIS252 PRO253 LYS254 GLN255 VAL256 ALA257 LEU258 ALA259 ASN260 GLU261 VAL262 PHE263 THR264 PRO265 SER266 GLU267 THR268 ALA269 VAL270 THR271 GLU272 ALA273 ARG274 GLU275 ILE276 LEU277 ALA278 ALA279 MET280 ASP281 ALA282 ALA283 LYS284 ALA285 ARG286 GLY287 GLU288 GLY289 ALA290 THR291 VAL292 TYR293 LYS294 GLY295 ARG296 LEU297 VAL298 ASP299 ILE300 ALA301 SER302 ILE303 LYS304 GLN305 ALA306 GLU307 VAL308 ILE309 VAL310 ARG311 GLN312 ALA313 GLU314 MET315
Unit 5 PHE3 ARG4 LEU5 GLN6 PRO7 ALA8 PRO9 PRO10 ALA11 ARG12 PRO13 ASN14 ARG15 CYS16 GLN17 LEU18 PHE19 GLY20 PRO21 GLY22 SER23 ARG24 PRO25 ALA26 LEU27 PHE28 GLU29 LYS30 MET31 ALA32 ALA33 SER34 ALA35 ALA36 ASP37 VAL38 ILE39 ASN40 LEU41 ASP42 LEU43 GLU44 ASP45 SER46 VAL47 ALA48 PRO49 ASP50 ASP51 LYS52 ALA53 GLN54 ALA55 ARG56 ALA57 ASN58 ILE59 ILE60 GLU61 ALA62 ILE63 ASN64 GLY65 LEU66 ASP67 TRP68 GLY69 ARG70 LYS71 TYR72 LEU73 SER74 VAL75 ARG76 ILE77 ASN78 GLY79 LEU80 ASP81 THR82 PRO83 PHE84 TRP85 TYR86 ARG87 ASP88 VAL89 VAL90 ASP91 LEU92 LEU93 GLU94 GLN95 ALA96 GLY97 ASP98 ARG99 LEU100 ASP101 GLN102 ILE103 MET104 ILE105 PRO106 LYS107 VAL108 GLY109 CYS110 ALA111 ALA112 ASP113 VAL114 TYR115 ALA116 VAL117 ASP118 ALA119 LEU120 VAL121 THR122 ALA123 ILE124 GLU125 ARG126 ALA127 LYS128 GLY129 ARG130 THR131 LYS132 PRO133 LEU134 SER135 PHE136 GLU137 VAL138 ILE139 ILE140 GLU141 SER142 ALA143 ALA144 GLY145 ILE146 ALA147 HIS148 VAL149 GLU150 GLU151 ILE152 ALA153 ALA154 SER155 SER156 PRO157 ARG158 LEU159 GLN160 ALA161 MET162 SER163 LEU164 GLY165 ALA166 ALA167 ASP168 PHE169 ALA170 ALA171 SER172 MET173 GLY174 MET175 GLN176 THR177 THR178 GLY179 ILE180 GLY181 GLY182 THR183 GLN184 GLU185 ASN186 TYR187 TYR188 MET189 LEU190 HIS191 ASP192 GLY193 GLN194 LYS195 HIS196 TRP197 SER198 ASP199 PRO200 TRP201 HIS202 TRP203 ALA204 GLN205 ALA206 ALA207 ILE208 VAL209 ALA210 ALA211 CYS212 ARG213 THR214 HIS215 GLY216 ILE217 LEU218 PRO219 VAL220 ASP221 GLY222 PRO223 PHE224 GLY225 ASP226 PHE227 SER228 ASP229 ASP230 GLU231 GLY232 PHE233 ARG234 ALA235 GLN236 ALA237 ARG238 ARG239 SER240 ALA241 THR242 LEU243 GLY244 MET245 VAL246 GLY247 LYS248 TRP249 ALA250 ILE251 HIS252 PRO253 LYS254 GLN255 VAL256 ALA257 LEU258 ALA259 ASN260 GLU261 VAL262 PHE263 THR264 PRO265 SER266 GLU267 THR268 ALA269 VAL270 THR271 GLU272 ALA273 ARG274 GLU275 ILE276 LEU277 ALA278 ALA279 MET280 ASP281 ALA282 ALA283 LYS284 ALA285 ARG286 GLY287 GLU288 GLY289 ALA290 THR291 VAL292 TYR293 LYS294 GLY295 ARG296 LEU297 VAL298 ASP299 ILE300 ALA301 SER302 ILE303 LYS304 GLN305 ALA306 GLU307 VAL308 ILE309 VAL310 ARG311 GLN312 ALA313 GLU314 MET315
Unit 6 PHE3 ARG4 LEU5 GLN6 PRO7 ALA8 PRO9 PRO10 ALA11 ARG12 PRO13 ASN14 ARG15 CYS16 GLN17 LEU18 PHE19 GLY20 PRO21 GLY22 SER23 ARG24 PRO25 ALA26 LEU27 PHE28 GLU29 LYS30 MET31 ALA32 ALA33 SER34 ALA35 ALA36 ASP37 VAL38 ILE39 ASN40 LEU41 ASP42 LEU43 GLU44 ASP45 SER46 VAL47 ALA48 PRO49 ASP50 ASP51 LYS52 ALA53 GLN54 ALA55 ARG56 ALA57 ASN58 ILE59 ILE60 GLU61 ALA62 ILE63 ASN64 GLY65 LEU66 ASP67 TRP68 GLY69 ARG70 LYS71 TYR72 LEU73 SER74 VAL75 ARG76 ILE77 ASN78 GLY79 LEU80 ASP81 THR82 PRO83 PHE84 TRP85 TYR86 ARG87 ASP88 VAL89 VAL90 ASP91 LEU92 LEU93 GLU94 GLN95 ALA96 GLY97 ASP98 ARG99 LEU100 ASP101 GLN102 ILE103 MET104 ILE105 PRO106 LYS107 VAL108 GLY109 CYS110 ALA111 ALA112 ASP113 VAL114 TYR115 ALA116 VAL117 ASP118 ALA119 LEU120 VAL121 THR122 ALA123 ILE124 GLU125 ARG126 ALA127 LYS128 GLY129 ARG130 THR131 LYS132 PRO133 LEU134 SER135 PHE136 GLU137 VAL138 ILE139 ILE140 GLU141 SER142 ALA143 ALA144 GLY145 ILE146 ALA147 HIS148 VAL149 GLU150 GLU151 ILE152 ALA153 ALA154 SER155 SER156 PRO157 ARG158 LEU159 GLN160 ALA161 MET162 SER163 LEU164 GLY165 ALA166 ALA167 ASP168 PHE169 ALA170 ALA171 SER172 MET173 GLY174 MET175 GLN176 THR177 THR178 GLY179 ILE180 GLY181 GLY182 THR183 GLN184 GLU185 ASN186 TYR187 TYR188 MET189 LEU190 HIS191 ASP192 GLY193 GLN194 LYS195 HIS196 TRP197 SER198 ASP199 PRO200 TRP201 HIS202 TRP203 ALA204 GLN205 ALA206 ALA207 ILE208 VAL209 ALA210 ALA211 CYS212 ARG213 THR214 HIS215 GLY216 ILE217 LEU218 PRO219 VAL220 ASP221 GLY222 PRO223 PHE224 GLY225 ASP226 PHE227 SER228 ASP229 ASP230 GLU231 GLY232 PHE233 ARG234 ALA235 GLN236 ALA237 ARG238 ARG239 SER240 ALA241 THR242 LEU243 GLY244 MET245 VAL246 GLY247 LYS248 TRP249 ALA250 ILE251 HIS252 PRO253 LYS254 GLN255 VAL256 ALA257 LEU258 ALA259 ASN260 GLU261 VAL262 PHE263 THR264 PRO265 SER266 GLU267 THR268 ALA269 VAL270 THR271 GLU272 ALA273 ARG274 GLU275 ILE276 LEU277 ALA278 ALA279 MET280 ASP281 ALA282 ALA283 LYS284 ALA285 ARG286 GLY287 GLU288 GLY289 ALA290 THR291 VAL292 TYR293 LYS294 GLY295 ARG296 LEU297 VAL298 ASP299 ILE300 ALA301 SER302 ILE303 LYS304 GLN305 ALA306 GLU307 VAL308 ILE309 VAL310 ARG311 GLN312 ALA313 GLU314 MET315
Ligands
Unit 7 COA401 OXL402 MG403
Unit 8 COA401 OXL402 MG403
Unit 9 COA401 OXL402 MG403
Unit 10 COA401 OXL402 MG403
Unit 11 COA401 OXL402 MG403
Unit 12 COA401 OXL402 MG403
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany