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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF SIRT2 IN COMPLEX WITH THE MACROCYCLIC P S2IL5
Keywords MACROCYCLIC PEPTIDE, STRUCTURAL CHANGE, HYDROLASE-HYDROLASE COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4L3O     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2  A 297 2360 0
2  Protein   NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2  B 295 2329 0
3  Protein   NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2  C 294 2320 0
4  Protein   NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2  D 293 2314 0
5  Protein   CYCLIC PEPTIDE S2IL5  E 16 125 19
6  Protein   CYCLIC PEPTIDE S2IL5  F 16 125 19
7  Protein   CYCLIC PEPTIDE S2IL5  G 16 125 19
8  Protein   CYCLIC PEPTIDE S2IL5  H 16 125 19
9  Ligand   NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2  A 2 0 13
10  Ligand   NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2  B 3 0 17
11  Ligand   NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2  C 4 0 21
12  Ligand   NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2  D 2 0 13
13  Ligand   CYCLIC PEPTIDE S2IL5  G 1 0 4
14 Water     507 0 507
total       1762 9823 651
Proteins
Unit 1 LYS55 GLU56 ARG57 LEU58 LEU59 ASP60 GLU61 LEU62 THR63 LEU64 GLU65 GLY66 VAL67 ALA68 ARG69 TYR70 MET71 GLN72 SER73 GLU74 ARG75 CYS76 ARG77 ARG78 VAL79 ILE80 CYS81 LEU82 VAL83 GLY84 ALA85 GLY86 ILE87 SER88 THR89 SER90 ALA91 GLY92 ILE93 PRO94 ASP95 PHE96 ARG97 SER98 TYR104 ASP105 ASN106 LEU107 GLU108 LYS109 TYR110 HIS111 LEU112 PRO113 TYR114 PRO115 GLU116 ALA117 ILE118 PHE119 GLU120 ILE121 SER122 TYR123 PHE124 LYS125 LYS126 HIS127 PRO128 GLU129 PRO130 PHE131 PHE132 ALA133 LEU134 ALA135 LYS136 GLU137 LEU138 TYR139 PRO140 GLY141 GLN142 PHE143 LYS144 PRO145 THR146 ILE147 CYS148 HIS149 TYR150 PHE151 MET152 ARG153 LEU154 LEU155 LYS156 ASP157 LYS158 GLY159 LEU160 LEU161 LEU162 ARG163 CYS164 TYR165 THR166 GLN167 ASN168 ILE169 ASP170 THR171 LEU172 GLU173 ARG174 ILE175 ALA176 GLY177 LEU178 GLU179 GLN180 GLU181 ASP182 LEU183 VAL184 GLU185 ALA186 HIS187 GLY188 THR189 PHE190 TYR191 THR192 SER193 HIS194 CYS195 VAL196 SER197 ALA198 SER199 CYS200 ARG201 HIS202 GLU203 TYR204 PRO205 LEU206 SER207 TRP208 MET209 LYS210 GLU211 LYS212 ILE213 PHE214 SER215 GLU216 VAL217 THR218 PRO219 LYS220 CYS221 GLU222 ASP223 CYS224 GLN225 SER226 LEU227 VAL228 LYS229 PRO230 ASP231 ILE232 VAL233 PHE234 PHE235 GLY236 GLU237 SER238 LEU239 PRO240 ALA241 ARG242 PHE243 PHE244 SER245 CYS246 MET247 GLN248 SER249 ASP250 PHE251 LEU252 LYS253 VAL254 ASP255 LEU256 LEU257 LEU258 VAL259 MET260 GLY261 THR262 SER263 LEU264 GLN265 VAL266 GLN267 PRO268 PHE269 ALA270 SER271 LEU272 ILE273 SER274 LYS275 ALA276 PRO277 LEU278 SER279 THR280 PRO281 ARG282 LEU283 LEU284 ILE285 ASN286 LYS287 GLU288 LYS289 ALA290 GLY291 GLN292 SER293 ASP294 PRO295 PHE296 LEU297 GLY298 MET299 ILE300 MET301 GLY302 LEU303 GLY304 GLY305 GLY306 MET307 ASP308 PHE309 ASP310 SER311 LYS312 LYS313 ALA314 TYR315 ARG316 ASP317 VAL318 ALA319 TRP320 LEU321 GLY322 GLU323 CYS324 ASP325 GLN326 GLY327 CYS328 LEU329 ALA330 LEU331 ALA332 GLU333 LEU334 LEU335 GLY336 TRP337 LYS338 LYS339 GLU340 LEU341 GLU342 ASP343 LEU344 VAL345 ARG346 ARG347 GLU348 HIS349 ALA350 SER351 ILE352 ASP353 ALA354 GLN355 SER356
Unit 2 GLU56 ARG57 LEU58 LEU59 ASP60 GLU61 LEU62 THR63 LEU64 GLU65 GLY66 VAL67 ALA68 ARG69 TYR70 MET71 GLN72 SER73 GLU74 ARG75 CYS76 ARG77 ARG78 VAL79 ILE80 CYS81 LEU82 VAL83 GLY84 ALA85 GLY86 ILE87 SER88 THR89 SER90 ALA91 GLY92 ILE93 PRO94 ASP95 PHE96 ARG97 SER98 PRO99 SER100 LEU107 GLU108 LYS109 TYR110 HIS111 LEU112 PRO113 TYR114 PRO115 GLU116 ALA117 ILE118 PHE119 GLU120 ILE121 SER122 TYR123 PHE124 LYS125 LYS126 HIS127 PRO128 GLU129 PRO130 PHE131 PHE132 ALA133 LEU134 ALA135 LYS136 GLU137 LEU138 TYR139 PRO140 GLY141 GLN142 PHE143 LYS144 PRO145 THR146 ILE147 CYS148 HIS149 TYR150 PHE151 MET152 ARG153 LEU154 LEU155 LYS156 ASP157 LYS158 GLY159 LEU160 LEU161 LEU162 ARG163 CYS164 TYR165 THR166 GLN167 ASN168 ILE169 ASP170 THR171 LEU172 GLU173 ARG174 ILE175 ALA176 GLY177 LEU178 GLU179 GLN180 GLU181 ASP182 LEU183 VAL184 GLU185 ALA186 HIS187 GLY188 THR189 PHE190 TYR191 THR192 SER193 HIS194 CYS195 VAL196 SER197 ALA198 SER199 CYS200 ARG201 HIS202 GLU203 TYR204 PRO205 LEU206 SER207 TRP208 MET209 LYS210 GLU211 LYS212 ILE213 PHE214 SER215 GLU216 VAL217 THR218 PRO219 LYS220 CYS221 GLU222 ASP223 CYS224 GLN225 SER226 LEU227 VAL228 LYS229 PRO230 ASP231 ILE232 VAL233 PHE234 PHE235 GLY236 GLU237 SER238 LEU239 PRO240 ALA241 ARG242 PHE243 PHE244 SER245 CYS246 MET247 GLN248 SER249 ASP250 PHE251 LEU252 LYS253 VAL254 ASP255 LEU256 LEU257 LEU258 VAL259 MET260 GLY261 THR262 SER263 LEU264 GLN265 VAL266 GLN267 PRO268 PHE269 ALA270 SER271 LEU272 ILE273 SER274 LYS275 ALA276 PRO277 LEU278 SER279 THR280 PRO281 ARG282 LEU283 LEU284 ILE285 ASN286 LYS287 GLU288 LYS289 ALA290 GLY291 GLN292 SER293 ASP294 PRO295 PHE296 LEU297 GLY298 MET299 ILE300 MET301 GLY302 LEU303 GLY304 GLY305 GLY306 MET307 ASP308 PHE309 ASP310 SER311 LYS312 LYS313 ALA314 TYR315 ARG316 ASP317 VAL318 ALA319 TRP320 LEU321 GLY322 GLU323 CYS324 ASP325 GLN326 GLY327 CYS328 LEU329 ALA330 LEU331 ALA332 GLU333 LEU334 LEU335 GLY336 TRP337 LYS338 LYS339 GLU340 LEU341 GLU342 ASP343 LEU344 VAL345 ARG346 ARG347 GLU348 HIS349 ALA350 SER351 ILE352 ASP353 ALA354 GLN355 SER356
Unit 3 ARG57 LEU58 LEU59 ASP60 GLU61 LEU62 THR63 LEU64 GLU65 GLY66 VAL67 ALA68 ARG69 TYR70 MET71 GLN72 SER73 GLU74 ARG75 CYS76 ARG77 ARG78 VAL79 ILE80 CYS81 LEU82 VAL83 GLY84 ALA85 GLY86 ILE87 SER88 THR89 SER90 ALA91 GLY92 ILE93 PRO94 ASP95 PHE96 ARG97 SER98 PRO99 ASN106 LEU107 GLU108 LYS109 TYR110 HIS111 LEU112 PRO113 TYR114 PRO115 GLU116 ALA117 ILE118 PHE119 GLU120 ILE121 SER122 TYR123 PHE124 LYS125 LYS126 HIS127 PRO128 GLU129 PRO130 PHE131 PHE132 ALA133 LEU134 ALA135 LYS136 GLU137 LEU138 TYR139 PRO140 GLY141 GLN142 PHE143 LYS144 PRO145 THR146 ILE147 CYS148 HIS149 TYR150 PHE151 MET152 ARG153 LEU154 LEU155 LYS156 ASP157 LYS158 GLY159 LEU160 LEU161 LEU162 ARG163 CYS164 TYR165 THR166 GLN167 ASN168 ILE169 ASP170 THR171 LEU172 GLU173 ARG174 ILE175 ALA176 GLY177 LEU178 GLU179 GLN180 GLU181 ASP182 LEU183 VAL184 GLU185 ALA186 HIS187 GLY188 THR189 PHE190 TYR191 THR192 SER193 HIS194 CYS195 VAL196 SER197 ALA198 SER199 CYS200 ARG201 HIS202 GLU203 TYR204 PRO205 LEU206 SER207 TRP208 MET209 LYS210 GLU211 LYS212 ILE213 PHE214 SER215 GLU216 VAL217 THR218 PRO219 LYS220 CYS221 GLU222 ASP223 CYS224 GLN225 SER226 LEU227 VAL228 LYS229 PRO230 ASP231 ILE232 VAL233 PHE234 PHE235 GLY236 GLU237 SER238 LEU239 PRO240 ALA241 ARG242 PHE243 PHE244 SER245 CYS246 MET247 GLN248 SER249 ASP250 PHE251 LEU252 LYS253 VAL254 ASP255 LEU256 LEU257 LEU258 VAL259 MET260 GLY261 THR262 SER263 LEU264 GLN265 VAL266 GLN267 PRO268 PHE269 ALA270 SER271 LEU272 ILE273 SER274 LYS275 ALA276 PRO277 LEU278 SER279 THR280 PRO281 ARG282 LEU283 LEU284 ILE285 ASN286 LYS287 GLU288 LYS289 ALA290 GLY291 GLN292 SER293 ASP294 PRO295 PHE296 LEU297 GLY298 MET299 ILE300 MET301 GLY302 LEU303 GLY304 GLY305 GLY306 MET307 ASP308 PHE309 ASP310 SER311 LYS312 LYS313 ALA314 TYR315 ARG316 ASP317 VAL318 ALA319 TRP320 LEU321 GLY322 GLU323 CYS324 ASP325 GLN326 GLY327 CYS328 LEU329 ALA330 LEU331 ALA332 GLU333 LEU334 LEU335 GLY336 TRP337 LYS338 LYS339 GLU340 LEU341 GLU342 ASP343 LEU344 VAL345 ARG346 ARG347 GLU348 HIS349 ALA350 SER351 ILE352 ASP353 ALA354 GLN355 SER356
Unit 4 ARG57 LEU58 LEU59 ASP60 GLU61 LEU62 THR63 LEU64 GLU65 GLY66 VAL67 ALA68 ARG69 TYR70 MET71 GLN72 SER73 GLU74 ARG75 CYS76 ARG77 ARG78 VAL79 ILE80 CYS81 LEU82 VAL83 GLY84 ALA85 GLY86 ILE87 SER88 THR89 SER90 ALA91 GLY92 ILE93 PRO94 ASP95 PHE96 ARG97 SER98 ASN106 LEU107 GLU108 LYS109 TYR110 HIS111 LEU112 PRO113 TYR114 PRO115 GLU116 ALA117 ILE118 PHE119 GLU120 ILE121 SER122 TYR123 PHE124 LYS125 LYS126 HIS127 PRO128 GLU129 PRO130 PHE131 PHE132 ALA133 LEU134 ALA135 LYS136 GLU137 LEU138 TYR139 PRO140 GLY141 GLN142 PHE143 LYS144 PRO145 THR146 ILE147 CYS148 HIS149 TYR150 PHE151 MET152 ARG153 LEU154 LEU155 LYS156 ASP157 LYS158 GLY159 LEU160 LEU161 LEU162 ARG163 CYS164 TYR165 THR166 GLN167 ASN168 ILE169 ASP170 THR171 LEU172 GLU173 ARG174 ILE175 ALA176 GLY177 LEU178 GLU179 GLN180 GLU181 ASP182 LEU183 VAL184 GLU185 ALA186 HIS187 GLY188 THR189 PHE190 TYR191 THR192 SER193 HIS194 CYS195 VAL196 SER197 ALA198 SER199 CYS200 ARG201 HIS202 GLU203 TYR204 PRO205 LEU206 SER207 TRP208 MET209 LYS210 GLU211 LYS212 ILE213 PHE214 SER215 GLU216 VAL217 THR218 PRO219 LYS220 CYS221 GLU222 ASP223 CYS224 GLN225 SER226 LEU227 VAL228 LYS229 PRO230 ASP231 ILE232 VAL233 PHE234 PHE235 GLY236 GLU237 SER238 LEU239 PRO240 ALA241 ARG242 PHE243 PHE244 SER245 CYS246 MET247 GLN248 SER249 ASP250 PHE251 LEU252 LYS253 VAL254 ASP255 LEU256 LEU257 LEU258 VAL259 MET260 GLY261 THR262 SER263 LEU264 GLN265 VAL266 GLN267 PRO268 PHE269 ALA270 SER271 LEU272 ILE273 SER274 LYS275 ALA276 PRO277 LEU278 SER279 THR280 PRO281 ARG282 LEU283 LEU284 ILE285 ASN286 LYS287 GLU288 LYS289 ALA290 GLY291 GLN292 SER293 ASP294 PRO295 PHE296 LEU297 GLY298 MET299 ILE300 MET301 GLY302 LEU303 GLY304 GLY305 GLY306 MET307 ASP308 PHE309 ASP310 SER311 LYS312 LYS313 ALA314 TYR315 ARG316 ASP317 VAL318 ALA319 TRP320 LEU321 GLY322 GLU323 CYS324 ASP325 GLN326 GLY327 CYS328 LEU329 ALA330 LEU331 ALA332 GLU333 LEU334 LEU335 GLY336 TRP337 LYS338 LYS339 GLU340 LEU341 GLU342 ASP343 LEU344 VAL345 ARG346 ARG347 GLU348 HIS349 ALA350 SER351 ILE352 ASP353 ALA354 GLN355 SER356
Unit 5 ACY1001 TYR1002 HIS1003 THR1004 TYR1005 HIS1006 VAL1007 FAK1008 ARG1009 ARG1010 THR1011 ASN1012 TYR1013 TYR1014 CYS1015 NH21016
Unit 6 ACY1001 TYR1002 HIS1003 THR1004 TYR1005 HIS1006 VAL1007 FAK1008 ARG1009 ARG1010 THR1011 ASN1012 TYR1013 TYR1014 CYS1015 NH21016
Unit 7 ACY1001 TYR1002 HIS1003 THR1004 TYR1005 HIS1006 VAL1007 FAK1008 ARG1009 ARG1010 THR1011 ASN1012 TYR1013 TYR1014 CYS1015 NH21016
Unit 8 ACY1001 TYR1002 HIS1003 THR1004 TYR1005 HIS1006 VAL1007 FAK1008 ARG1009 ARG1010 THR1011 ASN1012 TYR1013 TYR1014 CYS1015 NH21016
Ligands
Unit 9 ZN501 MES502
Unit 10 ZN501 MES502 EDO503
Unit 11 ZN501 MES502 EDO503 EDO504
Unit 12 ZN501 MES502
Unit 13 EDO1101
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany