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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF GH3.12 FROM ARABIDOPSIS THALIANA IN COM AMPCPP AND SALICYLATE
Keywords ACYL ACID AMIDO SYNTHASE, PROTEIN-LIGAND COMPLEX, MAGNESIUM,
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4L39     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   4-SUBSTITUTED BENZOATES-GLUTAMATE LIGASE GH3.12  A 541 4123 0
2  Protein   4-SUBSTITUTED BENZOATES-GLUTAMATE LIGASE GH3.12  B 542 4193 0
3  Ligand   4-SUBSTITUTED BENZOATES-GLUTAMATE LIGASE GH3.12  A 3 0 42
4  Ligand   4-SUBSTITUTED BENZOATES-GLUTAMATE LIGASE GH3.12  B 2 0 41
5 Water     213 0 213
total       1301 8316 296
Proteins
Unit 1 GLU9 THR10 PHE11 GLU12 LYS13 GLN14 LEU15 LYS16 ASP17 LEU18 THR19 SER20 ASN21 VAL22 LYS23 SER24 ILE25 GLN26 ASP27 ASN28 LEU29 LEU30 GLU31 GLU32 ILE33 ILE34 THR35 PRO36 ASN37 THR38 LYS39 THR40 GLU41 TYR42 LEU43 GLN44 ARG45 PHE46 LEU47 ILE48 ASP49 ARG50 PHE51 ASP52 LYS53 GLU54 LEU55 PHE56 LYS57 LYS58 ASN59 VAL60 PRO61 ILE62 VAL63 SER64 TYR65 GLU66 ASP67 ILE68 LYS69 PRO70 TYR71 LEU72 ASP73 ARG74 VAL75 VAL76 ASN77 GLY78 GLU79 SER80 SER81 ASP82 VAL83 ILE84 SER85 ALA86 ARG87 THR88 ILE89 THR90 GLY91 PHE92 LEU93 LEU94 SER95 ALA102 GLN103 LYS104 MET105 MET106 PRO107 TRP108 ASN109 ASN110 LYS111 TYR112 LEU113 ASP114 ASN115 LEU116 THR117 PHE118 ILE119 TYR120 ASP121 LEU122 ARG123 MET124 GLN125 VAL126 ILE127 THR128 LYS129 HIS130 VAL131 LYS132 GLY133 VAL134 GLU135 GLU136 GLY137 LYS138 GLY139 MET140 MET141 PHE142 LEU143 PHE144 THR145 LYS146 GLN147 GLU148 SER149 MET150 THR151 PRO152 SER153 GLY154 LEU155 PRO156 ALA157 ARG158 VAL159 ALA160 THR161 SER162 SER163 TYR164 PHE165 LYS166 SER167 ASP168 TYR169 PHE170 LYS171 ASN172 ARG173 PRO174 SER175 ASN176 TRP177 TYR178 TYR179 SER180 TYR181 THR182 SER183 PRO184 ASP185 GLU186 VAL187 ILE188 LEU189 CYS190 PRO191 ASN192 ASN193 THR194 GLU195 SER196 LEU197 TYR198 CYS199 HIS200 LEU201 LEU202 CYS203 GLY204 LEU205 VAL206 GLN207 ARG208 ASP209 GLU210 VAL211 VAL212 ARG213 THR214 GLY215 SER216 ILE217 PHE218 ALA219 SER220 VAL221 MET222 VAL223 ARG224 ALA225 ILE226 GLU227 VAL228 LEU229 LYS230 ASN231 SER232 TRP233 GLU234 GLU235 LEU236 CYS237 SER238 ASN239 ILE240 ARG241 SER242 GLY243 HIS244 LEU245 SER246 ASN247 TRP248 VAL249 THR250 ASP251 LEU252 GLY253 CYS254 GLN255 ASN256 SER257 VAL258 SER259 LEU260 VAL261 LEU262 GLY263 GLY264 PRO265 ARG266 PRO267 GLU268 LEU269 ALA270 ASP271 THR272 ILE273 GLU274 GLU275 ILE276 CYS277 ASN278 GLN279 ASN280 SER281 TRP282 LYS283 GLY284 ILE285 VAL286 LYS287 ARG288 LEU289 TRP290 PRO291 ASN292 THR293 LYS294 TYR295 ILE296 GLU297 THR298 VAL299 VAL300 THR301 GLY302 SER303 MET304 GLY305 GLN306 TYR307 VAL308 PRO309 MET310 LEU311 ASN312 TYR313 TYR314 CYS315 ASN316 ASP317 LEU318 PRO319 LEU320 VAL321 SER322 THR323 THR324 TYR325 GLY326 SER327 SER328 GLU329 THR330 THR331 PHE332 GLY333 ILE334 ASN335 LEU336 ASP337 PRO338 LEU339 CYS340 LYS341 PRO342 GLU343 ASP344 VAL345 SER346 TYR347 THR348 PHE349 MET350 PRO351 ASN352 MET353 SER354 TYR355 PHE356 GLU357 PHE358 ILE359 PRO360 MET361 ASP362 GLY363 GLY364 ASP365 LYS366 ASN367 ASP368 VAL369 VAL370 ASP371 LEU372 GLU373 ASP374 VAL375 LYS376 LEU377 GLY378 CYS379 THR380 TYR381 GLU382 PRO383 VAL384 VAL385 THR386 ASN387 PHE388 ALA389 GLY390 LEU391 TYR392 ARG393 MET394 ARG395 VAL396 GLY397 ASP398 ILE399 VAL400 LEU401 VAL402 THR403 GLY404 PHE405 TYR406 ASN407 ASN408 ALA409 PRO410 GLN411 PHE412 LYS413 PHE414 VAL415 ARG416 ARG417 GLU418 ASN419 VAL420 VAL421 LEU422 SER423 ILE424 ASP425 SER426 ASP427 LYS428 THR429 ASN430 GLU431 GLU432 ASP433 LEU434 PHE435 LYS436 ALA437 VAL438 SER439 GLN440 ALA441 LYS442 LEU443 VAL444 LEU445 GLU446 SER447 SER448 GLY449 LEU450 ASP451 LEU452 LYS453 ASP454 PHE455 THR456 SER457 TYR458 ALA459 ASP460 THR461 SER462 THR463 PHE464 PRO465 GLY466 HIS467 TYR468 VAL469 VAL470 TYR471 LEU472 GLU473 GLY479 GLU480 GLN486 PHE487 GLU488 LEU489 ASP490 GLU491 GLU492 ALA493 LEU494 SER495 THR496 CYS497 CYS498 LEU499 VAL500 MET501 GLU502 GLU503 SER504 LEU505 ASP506 ASN507 VAL508 TYR509 LYS510 ARG511 CYS512 ARG513 PHE514 LYS515 ASP516 GLY517 SER518 ILE519 GLY520 PRO521 LEU522 GLU523 ILE524 ARG525 VAL526 VAL527 GLY530 THR531 PHE532 ASP533 SER534 LEU535 MET536 ASP537 PHE538 PHE539 ILE540 SER541 GLN542 GLY543 GLN548 TYR549 LYS550 THR551 PRO552 ARG553 CYS554 LYS559 ALA560 LEU561 GLN562 VAL563 LEU564 GLU565 THR566 CYS567 VAL568 VAL569 ALA570 LYS571 PHE572 PHE573 SER574 ILE575
Unit 2 ASN8 GLU9 THR10 PHE11 GLU12 LYS13 GLN14 LEU15 LYS16 ASP17 LEU18 THR19 SER20 ASN21 VAL22 LYS23 SER24 ILE25 GLN26 ASP27 ASN28 LEU29 LEU30 GLU31 GLU32 ILE33 ILE34 THR35 PRO36 ASN37 THR38 LYS39 THR40 GLU41 TYR42 LEU43 GLN44 ARG45 PHE46 LEU47 ILE48 ASP49 ARG50 PHE51 ASP52 LYS53 GLU54 LEU55 PHE56 LYS57 LYS58 ASN59 VAL60 PRO61 ILE62 VAL63 SER64 TYR65 GLU66 ASP67 ILE68 LYS69 PRO70 TYR71 LEU72 ASP73 ARG74 VAL75 VAL76 ASN77 GLY78 GLU79 SER80 SER81 ASP82 VAL83 ILE84 SER85 ALA86 ARG87 THR88 ILE89 THR90 GLY91 PHE92 LEU93 LEU94 SER95 SER96 ALA102 GLN103 LYS104 MET105 MET106 PRO107 TRP108 ASN109 ASN110 LYS111 TYR112 LEU113 ASP114 ASN115 LEU116 THR117 PHE118 ILE119 TYR120 ASP121 LEU122 ARG123 MET124 GLN125 VAL126 ILE127 THR128 LYS129 HIS130 VAL131 LYS132 GLY133 VAL134 GLU135 GLU136 GLY137 LYS138 GLY139 MET140 MET141 PHE142 LEU143 PHE144 THR145 LYS146 GLN147 GLU148 SER149 MET150 THR151 PRO152 SER153 GLY154 LEU155 PRO156 ALA157 ARG158 VAL159 ALA160 THR161 SER162 SER163 TYR164 PHE165 LYS166 SER167 ASP168 TYR169 PHE170 LYS171 ASN172 ARG173 PRO174 SER175 ASN176 TRP177 TYR178 TYR179 SER180 TYR181 THR182 SER183 PRO184 ASP185 GLU186 VAL187 ILE188 LEU189 CYS190 PRO191 ASN192 ASN193 THR194 GLU195 SER196 LEU197 TYR198 CYS199 HIS200 LEU201 LEU202 CYS203 GLY204 LEU205 VAL206 GLN207 ARG208 ASP209 GLU210 VAL211 VAL212 ARG213 THR214 GLY215 SER216 ILE217 PHE218 ALA219 SER220 VAL221 MET222 VAL223 ARG224 ALA225 ILE226 GLU227 VAL228 LEU229 LYS230 ASN231 SER232 TRP233 GLU234 GLU235 LEU236 CYS237 SER238 ASN239 ILE240 ARG241 SER242 GLY243 HIS244 LEU245 SER246 ASN247 TRP248 VAL249 THR250 ASP251 LEU252 GLY253 CYS254 GLN255 ASN256 SER257 VAL258 SER259 LEU260 VAL261 LEU262 GLY263 GLY264 PRO265 ARG266 PRO267 GLU268 LEU269 ALA270 ASP271 THR272 ILE273 GLU274 GLU275 ILE276 CYS277 ASN278 GLN279 ASN280 SER281 TRP282 LYS283 GLY284 ILE285 VAL286 LYS287 ARG288 LEU289 TRP290 PRO291 ASN292 THR293 LYS294 TYR295 ILE296 GLU297 THR298 VAL299 VAL300 THR301 GLY302 SER303 MET304 GLY305 GLN306 TYR307 VAL308 PRO309 MET310 LEU311 ASN312 TYR313 TYR314 CYS315 ASN316 ASP317 LEU318 PRO319 LEU320 VAL321 SER322 THR323 THR324 TYR325 GLY326 SER327 SER328 GLU329 THR330 THR331 PHE332 GLY333 ILE334 ASN335 LEU336 ASP337 PRO338 LEU339 CYS340 LYS341 PRO342 GLU343 ASP344 VAL345 SER346 TYR347 THR348 PHE349 MET350 PRO351 ASN352 MET353 SER354 TYR355 PHE356 GLU357 PHE358 ILE359 PRO360 MET361 ASP362 GLY363 GLY364 ASP365 LYS366 ASN367 ASP368 VAL369 VAL370 ASP371 LEU372 GLU373 ASP374 VAL375 LYS376 LEU377 GLY378 CYS379 THR380 TYR381 GLU382 PRO383 VAL384 VAL385 THR386 ASN387 PHE388 ALA389 GLY390 LEU391 TYR392 ARG393 MET394 ARG395 VAL396 GLY397 ASP398 ILE399 VAL400 LEU401 VAL402 THR403 GLY404 PHE405 TYR406 ASN407 ASN408 ALA409 PRO410 GLN411 PHE412 LYS413 PHE414 VAL415 ARG416 ARG417 GLU418 ASN419 VAL420 VAL421 LEU422 SER423 ILE424 ASP425 SER426 ASP427 LYS428 THR429 ASN430 GLU431 GLU432 ASP433 LEU434 PHE435 LYS436 ALA437 VAL438 SER439 GLN440 ALA441 LYS442 LEU443 VAL444 LEU445 GLU446 SER447 SER448 LYS453 ASP454 PHE455 THR456 SER457 TYR458 ALA459 ASP460 THR461 SER462 THR463 PHE464 PRO465 GLY466 HIS467 TYR468 VAL469 VAL470 TYR471 LEU472 GLU473 GLN486 PHE487 GLU488 LEU489 ASP490 GLU491 GLU492 ALA493 LEU494 SER495 THR496 CYS497 CYS498 LEU499 VAL500 MET501 GLU502 GLU503 SER504 LEU505 ASP506 ASN507 VAL508 TYR509 LYS510 ARG511 CYS512 ARG513 PHE514 LYS515 ASP516 GLY517 SER518 ILE519 GLY520 PRO521 LEU522 GLU523 ILE524 ARG525 VAL526 VAL527 ARG528 GLN529 GLY530 THR531 PHE532 ASP533 SER534 LEU535 MET536 ASP537 PHE538 PHE539 ILE540 SER541 THR546 GLY547 GLN548 TYR549 LYS550 THR551 PRO552 ARG553 CYS554 ILE555 LYS556 SER557 GLY558 LYS559 ALA560 LEU561 GLN562 VAL563 LEU564 GLU565 THR566 CYS567 VAL568 VAL569 ALA570 LYS571 PHE572 PHE573 SER574
Ligands
Unit 3 MG601 SAL602 APC603
Unit 4 SAL601 APC602
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany