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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN RTF1 PLUS3 DOMAIN IN COMPLEX WITH PHOSPHOPEPTIDE
Keywords TUTOR, PLUS3, PEPTIDE BINDING PROTEIN, SPT5 CTR BINDING, TRANSCRIPTION, PAF1 COMPLEX, RTF1, ORF ASSOCIATION REGION, CHROMATIN, TRANSCRIPTION-PEPTIDE COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4L1U     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOG  A 130 2123 0
2  Protein   RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOG  B 134 2183 0
3  Protein   RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOG  C 130 2125 0
4  Protein   RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOG  D 136 2182 0
5  Protein   RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOG  E 134 2190 0
6  Protein   RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOG  F 134 2178 0
7  Protein   TRANSCRIPTION ELONGATION FACTOR SPT5  G 8 100 16
8  Protein   TRANSCRIPTION ELONGATION FACTOR SPT5  H 11 125 16
9  Protein   TRANSCRIPTION ELONGATION FACTOR SPT5  I 5 64 16
10  Protein   TRANSCRIPTION ELONGATION FACTOR SPT5  J 5 65 16
11  Ligand   RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOG  A 4 0 29
12  Ligand   RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOG  B 7 0 35
13  Ligand   RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOG  C 5 0 34
14  Ligand   RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOG  D 8 0 49
15  Ligand   RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOG  E 5 0 25
16  Ligand   RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOG  F 4 0 29
17 Water     104 0 105
total       964 13335 370
Proteins
Unit 1 ILE349 THR350 HIS351 MET352 VAL353 SER354 LEU355 PRO356 GLU357 GLU358 LEU359 ASN360 ARG361 VAL362 ARG363 LEU364 SER365 ARG366 HIS367 LYS368 LEU369 GLU370 ARG371 TRP372 CYS373 HIS374 MET375 PRO376 PHE377 PHE378 ALA379 LYS380 THR381 VAL382 THR383 GLY384 CYS385 PHE386 VAL387 ARG388 ILE389 GLY390 ILE391 GLY392 ASN393 VAL399 TYR400 ARG401 VAL402 ALA403 GLU404 ILE405 THR406 GLY407 VAL408 VAL409 GLU410 THR411 ALA412 LYS413 VAL414 TYR415 GLN416 LEU417 GLY418 GLY419 THR420 ARG421 THR422 ASN423 LYS424 GLY425 LEU426 GLN427 LEU428 ARG429 HIS430 GLY431 ASN432 ASP433 GLN434 ARG435 VAL436 PHE437 ARG438 LEU439 GLU440 PHE441 VAL442 SER443 ASN444 GLN445 GLU446 PHE447 THR448 GLU449 SER450 GLU451 PHE452 MET453 LYS454 TRP455 LYS456 GLU457 ALA458 MET459 PHE460 SER461 ALA462 GLY463 MET464 GLN465 LEU466 PRO467 THR468 LEU469 ASP470 GLU471 ILE472 ASN473 LYS474 LYS475 GLU476 LEU477 SER478 ILE479 LYS480 GLU481 ALA482 LEU483
Unit 2 THR350 HIS351 MET352 VAL353 SER354 LEU355 PRO356 GLU357 GLU358 LEU359 ASN360 ARG361 VAL362 ARG363 LEU364 SER365 ARG366 HIS367 LYS368 LEU369 GLU370 ARG371 TRP372 CYS373 HIS374 MET375 PRO376 PHE377 PHE378 ALA379 LYS380 THR381 VAL382 THR383 GLY384 CYS385 PHE386 VAL387 ARG388 ILE389 GLY390 ILE391 GLY392 ASN393 HIS394 ASN395 SER396 LYS397 PRO398 VAL399 TYR400 ARG401 VAL402 ALA403 GLU404 ILE405 THR406 GLY407 VAL408 VAL409 GLU410 THR411 ALA412 LYS413 VAL414 TYR415 GLN416 LEU417 GLY418 GLY419 THR420 ARG421 THR422 ASN423 LYS424 GLY425 LEU426 GLN427 LEU428 ARG429 HIS430 GLY431 ASN432 ASP433 GLN434 ARG435 VAL436 PHE437 ARG438 LEU439 GLU440 PHE441 VAL442 SER443 ASN444 GLN445 GLU446 PHE447 THR448 GLU449 SER450 GLU451 PHE452 MET453 LYS454 TRP455 LYS456 GLU457 ALA458 MET459 PHE460 SER461 ALA462 GLY463 MET464 GLN465 LEU466 PRO467 THR468 LEU469 ASP470 GLU471 ILE472 ASN473 LYS474 LYS475 GLU476 LEU477 SER478 ILE479 LYS480 GLU481 ALA482 LEU483
Unit 3 THR350 HIS351 MET352 VAL353 SER354 LEU355 PRO356 GLU357 GLU358 LEU359 ASN360 ARG361 VAL362 ARG363 LEU364 SER365 ARG366 HIS367 LYS368 LEU369 GLU370 ARG371 TRP372 CYS373 HIS374 MET375 PRO376 PHE377 PHE378 ALA379 LYS380 THR381 VAL382 THR383 GLY384 CYS385 PHE386 VAL387 ARG388 ILE389 GLY390 ILE391 GLY392 LYS397 PRO398 VAL399 TYR400 ARG401 VAL402 ALA403 GLU404 ILE405 THR406 GLY407 VAL408 VAL409 GLU410 THR411 ALA412 LYS413 VAL414 TYR415 GLN416 LEU417 GLY418 GLY419 THR420 ARG421 THR422 ASN423 LYS424 GLY425 LEU426 GLN427 LEU428 ARG429 HIS430 GLY431 ASN432 ASP433 GLN434 ARG435 VAL436 PHE437 ARG438 LEU439 GLU440 PHE441 VAL442 SER443 ASN444 GLN445 GLU446 PHE447 THR448 GLU449 SER450 GLU451 PHE452 MET453 LYS454 TRP455 LYS456 GLU457 ALA458 MET459 PHE460 SER461 ALA462 GLY463 MET464 GLN465 LEU466 PRO467 THR468 LEU469 ASP470 GLU471 ILE472 ASN473 LYS474 LYS475 GLU476 LEU477 SER478 ILE479 LYS480 GLU481 ALA482 LEU483
Unit 4 ILE349 THR350 HIS351 MET352 VAL353 SER354 LEU355 PRO356 GLU357 GLU358 LEU359 ASN360 ARG361 VAL362 ARG363 LEU364 SER365 ARG366 HIS367 LYS368 LEU369 GLU370 ARG371 TRP372 CYS373 HIS374 MET375 PRO376 PHE377 PHE378 ALA379 LYS380 THR381 VAL382 THR383 GLY384 CYS385 PHE386 VAL387 ARG388 ILE389 GLY390 ILE391 GLY392 ASN393 HIS394 ASN395 SER396 LYS397 PRO398 VAL399 TYR400 ARG401 VAL402 ALA403 GLU404 ILE405 THR406 GLY407 VAL408 VAL409 GLU410 THR411 ALA412 LYS413 VAL414 TYR415 GLN416 LEU417 GLY418 GLY419 THR420 ARG421 THR422 ASN423 LYS424 GLY425 LEU426 GLN427 LEU428 ARG429 HIS430 GLY431 ASN432 ASP433 GLN434 ARG435 VAL436 PHE437 ARG438 LEU439 GLU440 PHE441 VAL442 SER443 ASN444 GLN445 GLU446 PHE447 THR448 GLU449 SER450 GLU451 PHE452 MET453 LYS454 TRP455 LYS456 GLU457 ALA458 MET459 PHE460 SER461 ALA462 GLY463 MET464 GLN465 LEU466 PRO467 THR468 LEU469 ASP470 GLU471 ILE472 ASN473 LYS474 LYS475 GLU476 LEU477 SER478 ILE479 LYS480 GLU481 ALA482 LEU483 ASN484
Unit 5 ILE349 THR350 HIS351 MET352 VAL353 SER354 LEU355 PRO356 GLU357 GLU358 LEU359 ASN360 ARG361 VAL362 ARG363 LEU364 SER365 ARG366 HIS367 LYS368 LEU369 GLU370 ARG371 TRP372 CYS373 HIS374 MET375 PRO376 PHE377 PHE378 ALA379 LYS380 THR381 VAL382 THR383 GLY384 CYS385 PHE386 VAL387 ARG388 ILE389 GLY390 ILE391 GLY392 ASN393 HIS394 ASN395 SER396 LYS397 PRO398 VAL399 TYR400 ARG401 VAL402 ALA403 GLU404 ILE405 THR406 GLY407 VAL408 VAL409 GLU410 THR411 ALA412 LYS413 VAL414 TYR415 GLN416 LEU417 GLY418 GLY419 THR420 ARG421 THR422 ASN423 LYS424 GLY425 LEU426 GLN427 LEU428 ARG429 HIS430 GLY431 ASN432 ASP433 GLN434 ARG435 VAL436 PHE437 ARG438 LEU439 GLU440 PHE441 VAL442 SER443 ASN444 GLN445 GLU446 PHE447 THR448 GLU449 SER450 GLU451 PHE452 MET453 LYS454 TRP455 LYS456 GLU457 ALA458 MET459 PHE460 SER461 ALA462 GLY463 MET464 GLN465 LEU466 PRO467 THR468 LEU469 ASP470 GLU471 ILE472 ASN473 LYS474 LYS475 GLU476 LEU477 SER478 ILE479 LYS480 GLU481 ALA482
Unit 6 ILE349 THR350 HIS351 MET352 VAL353 SER354 LEU355 PRO356 GLU357 GLU358 LEU359 ASN360 ARG361 VAL362 ARG363 LEU364 SER365 ARG366 HIS367 LYS368 LEU369 GLU370 ARG371 TRP372 CYS373 HIS374 MET375 PRO376 PHE377 PHE378 ALA379 LYS380 THR381 VAL382 THR383 GLY384 CYS385 PHE386 VAL387 ARG388 ILE389 GLY390 ILE391 GLY392 ASN393 HIS394 ASN395 SER396 LYS397 PRO398 VAL399 TYR400 ARG401 VAL402 ALA403 GLU404 ILE405 THR406 GLY407 VAL408 VAL409 GLU410 THR411 ALA412 LYS413 VAL414 TYR415 GLN416 LEU417 GLY418 GLY419 THR420 ARG421 THR422 ASN423 LYS424 GLY425 LEU426 GLN427 LEU428 ARG429 HIS430 GLY431 ASN432 ASP433 GLN434 ARG435 VAL436 PHE437 ARG438 LEU439 GLU440 PHE441 VAL442 SER443 ASN444 GLN445 GLU446 PHE447 THR448 GLU449 SER450 GLU451 PHE452 MET453 LYS454 TRP455 LYS456 GLU457 ALA458 MET459 PHE460 SER461 ALA462 GLY463 MET464 GLN465 LEU466 PRO467 THR468 LEU469 ASP470 GLU471 ILE472 ASN473 LYS474 LYS475 GLU476 LEU477 SER478 ILE479 LYS480 GLU481 ALA482
Unit 7 GLY781 SER782 ARG783 TPO784 PRO785 MET786 TYR787 GLY788
Unit 8 SER780 GLY781 SER782 ARG783 TPO784 PRO785 MET786 TYR787 GLY788 SER789 GLN790
Unit 9 ARG783 TPO784 PRO785 MET786 TYR787
Unit 10 SER782 ARG783 TPO784 PRO785 MET786
Ligands
Unit 11 SO4501 SO4502 SO4503 GOL504
Unit 12 SO4501 SO4502 SO4503 SO4504 SO4505 SO4506 SO4507
Unit 13 SO4501 SO4502 SO4503 SO4504 GOL505
Unit 14 SO4501 SO4502 SO4503 SO4504 SO4505 SO4506 SO4507 GOL508
Unit 15 SO4501 SO4502 SO4503 SO4504 SO4505
Unit 16 SO4501 SO4502 SO4503 GOL504
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany