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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF SIGNAL PEPTIDE PEPTIDASE A WITH C-TERMINI BOUND ACTIVE SITES: INSIGHTS INTO SPECIFICITY, SELF-PROCESSING AN REGULATION
Keywords HYDROLASE, ALPHA/BETA PROTEIN FOLD, SIGNAL PEPTIDE DIGESTION BACTERIAL CELL MEMBRANE, SELF-COMPARTMENTALIZED
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4KWB     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SIGNAL PEPTIDE PEPTIDASE SPPA  A 237 1797 0
2  Protein   SIGNAL PEPTIDE PEPTIDASE SPPA  B 233 1754 0
3  Protein   SIGNAL PEPTIDE PEPTIDASE SPPA  C 237 1808 0
4  Protein   SIGNAL PEPTIDE PEPTIDASE SPPA  D 228 1686 0
5  Protein   SIGNAL PEPTIDE PEPTIDASE SPPA  E 232 1747 0
6  Protein   SIGNAL PEPTIDE PEPTIDASE SPPA  F 234 1779 0
7  Protein   SIGNAL PEPTIDE PEPTIDASE SPPA  G 232 1756 0
8  Protein   SIGNAL PEPTIDE PEPTIDASE SPPA  H 232 1776 0
9 Water     221 0 221
total       2086 14103 221
Proteins
Unit 1 PRO56 SER57 SER58 LYS59 ILE60 ALA61 VAL62 LEU63 GLU64 VAL65 SER66 GLY67 THR68 ILE69 GLN70 ASP71 ASN72 ASP82 GLY83 TYR84 ASN85 HIS86 ARG87 THR88 PHE89 LEU90 LYS91 ASN92 LEU93 GLU94 ARG95 ALA96 LYS97 ASP98 ASP99 LYS100 THR101 VAL102 LYS103 GLY104 ILE105 VAL106 LEU107 LYS108 VAL109 ASN110 SER111 PRO112 GLY113 GLY114 GLY115 VAL116 TYR117 GLU118 SER119 ALA120 GLU121 ILE122 HIS123 LYS124 LYS125 LEU126 GLU127 GLU128 ILE129 LYS130 LYS131 GLU132 THR133 LYS134 LYS135 PRO136 ILE137 TYR138 VAL139 SER140 MET141 GLY142 SER143 MET144 ALA145 ALA146 SER147 GLY148 GLY149 TYR150 TYR151 ILE152 SER153 THR154 ALA155 ALA156 ASP157 LYS158 ILE159 PHE160 ALA161 THR162 PRO163 GLU164 THR165 LEU166 THR167 GLY168 SER169 LEU170 GLY171 VAL172 ILE173 MET174 GLU175 SER176 VAL177 ASN178 TYR179 SER180 LYS181 LEU182 ALA183 ASP184 LYS185 LEU186 GLY187 ILE188 SER189 PHE190 GLU191 THR192 ILE193 LYS194 SER195 GLY196 ALA197 HIS198 ALA199 ASP200 ILE201 MET202 SER203 PRO204 SER205 ARG206 GLU207 MET208 THR209 LYS210 GLU211 GLU212 LYS213 ASN214 ILE215 MET216 GLN217 SER218 MET219 VAL220 ASP221 ASN222 SER223 TYR224 GLU225 GLY226 PHE227 VAL228 ASP229 VAL230 ILE231 SER232 LYS233 GLY234 ARG235 GLY236 MET237 PRO238 LYS239 ALA240 GLU241 VAL242 LYS243 LYS244 ILE245 ALA246 ASP247 GLY248 ARG249 VAL250 TYR251 ASP252 GLY253 ARG254 GLN255 ALA256 LYS257 LYS258 LEU259 ASN260 LEU261 VAL262 ASP263 GLU264 LEU265 GLY266 PHE267 TYR268 ASP269 ASP270 THR271 ILE272 THR273 ALA274 MET275 LYS276 LYS277 ASP278 HIS279 LYS280 ASP281 LEU282 LYS283 ASN284 ALA285 SER286 VAL287 ILE288 SER289 TYR290 GLU291 SER326 PRO327 ARG328 MET329 MET330 TYR331 LEU332 TYR333 ALA334 LYS335
Unit 2 SER58 LYS59 ILE60 ALA61 VAL62 LEU63 GLU64 VAL65 SER66 GLY67 THR68 ILE69 GLN70 ASP71 ASN72 GLY83 TYR84 ASN85 HIS86 ARG87 THR88 PHE89 LEU90 LYS91 ASN92 LEU93 GLU94 ARG95 ALA96 LYS97 ASP98 ASP99 LYS100 THR101 VAL102 LYS103 GLY104 ILE105 VAL106 LEU107 LYS108 VAL109 ASN110 SER111 PRO112 GLY113 GLY114 GLY115 VAL116 TYR117 GLU118 SER119 ALA120 GLU121 ILE122 HIS123 LYS124 LYS125 LEU126 GLU127 GLU128 ILE129 LYS130 LYS131 GLU132 THR133 LYS134 LYS135 PRO136 ILE137 TYR138 VAL139 SER140 MET141 GLY142 SER143 MET144 ALA145 ALA146 SER147 GLY148 GLY149 TYR150 TYR151 ILE152 SER153 THR154 ALA155 ALA156 ASP157 LYS158 ILE159 PHE160 ALA161 THR162 PRO163 GLU164 THR165 LEU166 THR167 GLY168 SER169 LEU170 GLY171 VAL172 ILE173 MET174 GLU175 SER176 VAL177 ASN178 TYR179 SER180 LYS181 LEU182 ALA183 ASP184 LYS185 LEU186 GLY187 ILE188 SER189 PHE190 GLU191 THR192 ILE193 LYS194 SER195 GLY196 ALA197 HIS198 ALA199 ASP200 ILE201 MET202 SER203 PRO204 SER205 ARG206 GLU207 MET208 THR209 LYS210 GLU211 GLU212 LYS213 ASN214 ILE215 MET216 GLN217 SER218 MET219 VAL220 ASP221 ASN222 SER223 TYR224 GLU225 GLY226 PHE227 VAL228 ASP229 VAL230 ILE231 SER232 LYS233 GLY234 ARG235 GLY236 MET237 PRO238 LYS239 ALA240 GLU241 VAL242 LYS243 LYS244 ILE245 ALA246 ASP247 GLY248 ARG249 VAL250 TYR251 ASP252 GLY253 ARG254 GLN255 ALA256 LYS257 LYS258 LEU259 ASN260 LEU261 VAL262 ASP263 GLU264 LEU265 GLY266 PHE267 TYR268 ASP269 ASP270 THR271 ILE272 THR273 ALA274 MET275 LYS276 LYS277 ASP278 HIS279 LYS280 ASP281 LEU282 LYS283 ASN284 ALA285 SER286 VAL287 ILE288 SER289 TYR290 SER326 PRO327 ARG328 MET329 MET330 TYR331 LEU332 TYR333 ALA334 LYS335
Unit 3 SER57 SER58 LYS59 ILE60 ALA61 VAL62 LEU63 GLU64 VAL65 SER66 GLY67 THR68 ILE69 GLN70 ASP71 GLY83 TYR84 ASN85 HIS86 ARG87 THR88 PHE89 LEU90 LYS91 ASN92 LEU93 GLU94 ARG95 ALA96 LYS97 ASP98 ASP99 LYS100 THR101 VAL102 LYS103 GLY104 ILE105 VAL106 LEU107 LYS108 VAL109 ASN110 SER111 PRO112 GLY113 GLY114 GLY115 VAL116 TYR117 GLU118 SER119 ALA120 GLU121 ILE122 HIS123 LYS124 LYS125 LEU126 GLU127 GLU128 ILE129 LYS130 LYS131 GLU132 THR133 LYS134 LYS135 PRO136 ILE137 TYR138 VAL139 SER140 MET141 GLY142 SER143 MET144 ALA145 ALA146 SER147 GLY148 GLY149 TYR150 TYR151 ILE152 SER153 THR154 ALA155 ALA156 ASP157 LYS158 ILE159 PHE160 ALA161 THR162 PRO163 GLU164 THR165 LEU166 THR167 GLY168 SER169 LEU170 GLY171 VAL172 ILE173 MET174 GLU175 SER176 VAL177 ASN178 TYR179 SER180 LYS181 LEU182 ALA183 ASP184 LYS185 LEU186 GLY187 ILE188 SER189 PHE190 GLU191 THR192 ILE193 LYS194 SER195 GLY196 ALA197 HIS198 ALA199 ASP200 ILE201 MET202 SER203 PRO204 SER205 ARG206 GLU207 MET208 THR209 LYS210 GLU211 GLU212 LYS213 ASN214 ILE215 MET216 GLN217 SER218 MET219 VAL220 ASP221 ASN222 SER223 TYR224 GLU225 GLY226 PHE227 VAL228 ASP229 VAL230 ILE231 SER232 LYS233 GLY234 ARG235 GLY236 MET237 PRO238 LYS239 ALA240 GLU241 VAL242 LYS243 LYS244 ILE245 ALA246 ASP247 GLY248 ARG249 VAL250 TYR251 ASP252 GLY253 ARG254 GLN255 ALA256 LYS257 LYS258 LEU259 ASN260 LEU261 VAL262 ASP263 GLU264 LEU265 GLY266 PHE267 TYR268 ASP269 ASP270 THR271 ILE272 THR273 ALA274 MET275 LYS276 LYS277 ASP278 HIS279 LYS280 ASP281 LEU282 LYS283 ASN284 ALA285 SER286 VAL287 ILE288 SER289 TYR290 GLU291 GLU292 SER293 PHE294 GLY295 SER326 PRO327 ARG328 MET329 MET330 TYR331 LEU332 TYR333 ALA334
Unit 4 LYS59 ILE60 ALA61 VAL62 LEU63 GLU64 VAL65 SER66 GLY67 THR68 ILE69 GLN70 ASP71 GLY83 TYR84 ASN85 HIS86 ARG87 THR88 PHE89 LEU90 LYS91 ASN92 LEU93 GLU94 ARG95 ALA96 LYS97 ASP98 ASP99 LYS100 THR101 VAL102 LYS103 GLY104 ILE105 VAL106 LEU107 LYS108 VAL109 ASN110 SER111 PRO112 GLY113 GLY114 GLY115 VAL116 TYR117 GLU118 SER119 ALA120 GLU121 ILE122 HIS123 LYS124 LYS125 LEU126 GLU127 GLU128 ILE129 LYS130 LYS131 GLU132 THR133 LYS134 LYS135 PRO136 ILE137 TYR138 VAL139 SER140 MET141 GLY142 SER143 MET144 ALA145 ALA146 SER147 GLY148 GLY149 TYR150 TYR151 ILE152 SER153 THR154 ALA155 ALA156 ASP157 LYS158 ILE159 PHE160 ALA161 THR162 PRO163 GLU164 THR165 LEU166 THR167 GLY168 SER169 LEU170 GLY171 VAL172 ILE173 MET174 GLU175 SER176 VAL177 ASN178 TYR179 SER180 LYS181 LEU182 ALA183 ASP184 LYS185 LEU186 GLY187 ILE188 SER189 PHE190 GLU191 THR192 ILE193 LYS194 SER195 GLY196 ALA197 HIS198 ALA199 ASP200 ILE201 MET202 SER203 PRO204 SER205 ARG206 GLU207 MET208 THR209 LYS210 GLU211 GLU212 LYS213 ASN214 ILE215 MET216 GLN217 SER218 MET219 VAL220 ASP221 ASN222 SER223 TYR224 GLU225 GLY226 PHE227 VAL228 ASP229 VAL230 ILE231 SER232 LYS233 GLY234 ARG235 GLY236 MET237 PRO238 LYS239 ALA240 GLU241 VAL242 LYS243 LYS244 ILE245 ALA246 ASP247 GLY248 ARG249 VAL250 TYR251 ASP252 GLY253 ARG254 GLN255 ALA256 LYS257 LYS258 LEU259 ASN260 LEU261 VAL262 ASP263 GLU264 LEU265 GLY266 PHE267 TYR268 ASP269 ASP270 THR271 ILE272 THR273 ALA274 MET275 LYS276 LYS277 ASP278 HIS279 LYS280 ASP281 LEU282 LYS283 ASN284 ALA285 SER286 VAL287 ILE288 SER289 TYR290 PRO327 ARG328 MET329 MET330 TYR331 LEU332 TYR333
Unit 5 SER57 SER58 LYS59 ILE60 ALA61 VAL62 LEU63 GLU64 VAL65 SER66 GLY67 THR68 ILE69 GLN70 ASP71 ASN72 GLY83 TYR84 ASN85 HIS86 ARG87 THR88 PHE89 LEU90 LYS91 ASN92 LEU93 GLU94 ARG95 ALA96 LYS97 ASP98 ASP99 LYS100 THR101 VAL102 LYS103 GLY104 ILE105 VAL106 LEU107 LYS108 VAL109 ASN110 SER111 PRO112 GLY113 GLY114 GLY115 VAL116 TYR117 GLU118 SER119 ALA120 GLU121 ILE122 HIS123 LYS124 LYS125 LEU126 GLU127 GLU128 ILE129 LYS130 LYS131 GLU132 THR133 LYS134 LYS135 PRO136 ILE137 TYR138 VAL139 SER140 MET141 GLY142 SER143 MET144 ALA145 ALA146 SER147 GLY148 GLY149 TYR150 TYR151 ILE152 SER153 THR154 ALA155 ALA156 ASP157 LYS158 ILE159 PHE160 ALA161 THR162 PRO163 GLU164 THR165 LEU166 THR167 GLY168 SER169 LEU170 GLY171 VAL172 ILE173 MET174 GLU175 SER176 VAL177 ASN178 TYR179 SER180 LYS181 LEU182 ALA183 ASP184 LYS185 LEU186 GLY187 ILE188 SER189 PHE190 GLU191 THR192 ILE193 LYS194 SER195 GLY196 ALA197 HIS198 ALA199 ASP200 ILE201 MET202 SER203 PRO204 SER205 ARG206 GLU207 MET208 THR209 LYS210 GLU211 GLU212 LYS213 ASN214 ILE215 MET216 GLN217 SER218 MET219 VAL220 ASP221 ASN222 SER223 TYR224 GLU225 GLY226 PHE227 VAL228 ASP229 VAL230 ILE231 SER232 LYS233 GLY234 ARG235 GLY236 MET237 PRO238 LYS239 ALA240 GLU241 VAL242 LYS243 LYS244 ILE245 ALA246 ASP247 GLY248 ARG249 VAL250 TYR251 ASP252 GLY253 ARG254 GLN255 ALA256 LYS257 LYS258 LEU259 ASN260 LEU261 VAL262 ASP263 GLU264 LEU265 GLY266 PHE267 TYR268 ASP269 ASP270 THR271 ILE272 THR273 ALA274 MET275 LYS276 LYS277 ASP278 HIS279 LYS280 ASP281 LEU282 LYS283 ASN284 ALA285 SER286 VAL287 ILE288 SER289 TYR290 PRO327 ARG328 MET329 MET330 TYR331 LEU332 TYR333 ALA334
Unit 6 SER57 SER58 LYS59 ILE60 ALA61 VAL62 LEU63 GLU64 VAL65 SER66 GLY67 THR68 ILE69 GLN70 ASP71 ASN72 ASP82 GLY83 TYR84 ASN85 HIS86 ARG87 THR88 PHE89 LEU90 LYS91 ASN92 LEU93 GLU94 ARG95 ALA96 LYS97 ASP98 ASP99 LYS100 THR101 VAL102 LYS103 GLY104 ILE105 VAL106 LEU107 LYS108 VAL109 ASN110 SER111 PRO112 GLY113 GLY114 GLY115 VAL116 TYR117 GLU118 SER119 ALA120 GLU121 ILE122 HIS123 LYS124 LYS125 LEU126 GLU127 GLU128 ILE129 LYS130 LYS131 GLU132 THR133 LYS134 LYS135 PRO136 ILE137 TYR138 VAL139 SER140 MET141 GLY142 SER143 MET144 ALA145 ALA146 SER147 GLY148 GLY149 TYR150 TYR151 ILE152 SER153 THR154 ALA155 ALA156 ASP157 LYS158 ILE159 PHE160 ALA161 THR162 PRO163 GLU164 THR165 LEU166 THR167 GLY168 SER169 LEU170 GLY171 VAL172 ILE173 MET174 GLU175 SER176 VAL177 ASN178 TYR179 SER180 LYS181 LEU182 ALA183 ASP184 LYS185 LEU186 GLY187 ILE188 SER189 PHE190 GLU191 THR192 ILE193 LYS194 SER195 GLY196 ALA197 HIS198 ALA199 ASP200 ILE201 MET202 SER203 PRO204 SER205 ARG206 GLU207 MET208 THR209 LYS210 GLU211 GLU212 LYS213 ASN214 ILE215 MET216 GLN217 SER218 MET219 VAL220 ASP221 ASN222 SER223 TYR224 GLU225 GLY226 PHE227 VAL228 ASP229 VAL230 ILE231 SER232 LYS233 GLY234 ARG235 GLY236 MET237 PRO238 LYS239 ALA240 GLU241 VAL242 LYS243 LYS244 ILE245 ALA246 ASP247 GLY248 ARG249 VAL250 TYR251 ASP252 GLY253 ARG254 GLN255 ALA256 LYS257 LYS258 LEU259 ASN260 LEU261 VAL262 ASP263 GLU264 LEU265 GLY266 PHE267 TYR268 ASP269 ASP270 THR271 ILE272 THR273 ALA274 MET275 LYS276 LYS277 ASP278 HIS279 LYS280 ASP281 LEU282 LYS283 ASN284 ALA285 SER286 VAL287 ILE288 SER289 TYR290 GLU291 PRO327 ARG328 MET329 MET330 TYR331 LEU332 TYR333 ALA334
Unit 7 SER57 SER58 LYS59 ILE60 ALA61 VAL62 LEU63 GLU64 VAL65 SER66 GLY67 THR68 ILE69 GLN70 ASP71 ASN72 GLY83 TYR84 ASN85 HIS86 ARG87 THR88 PHE89 LEU90 LYS91 ASN92 LEU93 GLU94 ARG95 ALA96 LYS97 ASP98 ASP99 LYS100 THR101 VAL102 LYS103 GLY104 ILE105 VAL106 LEU107 LYS108 VAL109 ASN110 SER111 PRO112 GLY113 GLY114 GLY115 VAL116 TYR117 GLU118 SER119 ALA120 GLU121 ILE122 HIS123 LYS124 LYS125 LEU126 GLU127 GLU128 ILE129 LYS130 LYS131 GLU132 THR133 LYS134 LYS135 PRO136 ILE137 TYR138 VAL139 SER140 MET141 GLY142 SER143 MET144 ALA145 ALA146 SER147 GLY148 GLY149 TYR150 TYR151 ILE152 SER153 THR154 ALA155 ALA156 ASP157 LYS158 ILE159 PHE160 ALA161 THR162 PRO163 GLU164 THR165 LEU166 THR167 GLY168 SER169 LEU170 GLY171 VAL172 ILE173 MET174 GLU175 SER176 VAL177 ASN178 TYR179 SER180 LYS181 LEU182 ALA183 ASP184 LYS185 LEU186 GLY187 ILE188 SER189 PHE190 GLU191 THR192 ILE193 LYS194 SER195 GLY196 ALA197 HIS198 ALA199 ASP200 ILE201 MET202 SER203 PRO204 SER205 ARG206 GLU207 MET208 THR209 LYS210 GLU211 GLU212 LYS213 ASN214 ILE215 MET216 GLN217 SER218 MET219 VAL220 ASP221 ASN222 SER223 TYR224 GLU225 GLY226 PHE227 VAL228 ASP229 VAL230 ILE231 SER232 LYS233 GLY234 ARG235 GLY236 MET237 PRO238 LYS239 ALA240 GLU241 VAL242 LYS243 LYS244 ILE245 ALA246 ASP247 GLY248 ARG249 VAL250 TYR251 ASP252 GLY253 ARG254 GLN255 ALA256 LYS257 LYS258 LEU259 ASN260 LEU261 VAL262 ASP263 GLU264 LEU265 GLY266 PHE267 TYR268 ASP269 ASP270 THR271 ILE272 THR273 ALA274 MET275 LYS276 LYS277 ASP278 HIS279 LYS280 ASP281 LEU282 LYS283 ASN284 ALA285 SER286 VAL287 ILE288 SER289 TYR290 PRO327 ARG328 MET329 MET330 TYR331 LEU332 TYR333 ALA334
Unit 8 SER58 LYS59 ILE60 ALA61 VAL62 LEU63 GLU64 VAL65 SER66 GLY67 THR68 ILE69 GLN70 ASP71 ASN72 GLY83 TYR84 ASN85 HIS86 ARG87 THR88 PHE89 LEU90 LYS91 ASN92 LEU93 GLU94 ARG95 ALA96 LYS97 ASP98 ASP99 LYS100 THR101 VAL102 LYS103 GLY104 ILE105 VAL106 LEU107 LYS108 VAL109 ASN110 SER111 PRO112 GLY113 GLY114 GLY115 VAL116 TYR117 GLU118 SER119 ALA120 GLU121 ILE122 HIS123 LYS124 LYS125 LEU126 GLU127 GLU128 ILE129 LYS130 LYS131 GLU132 THR133 LYS134 LYS135 PRO136 ILE137 TYR138 VAL139 SER140 MET141 GLY142 SER143 MET144 ALA145 ALA146 SER147 GLY148 GLY149 TYR150 TYR151 ILE152 SER153 THR154 ALA155 ALA156 ASP157 LYS158 ILE159 PHE160 ALA161 THR162 PRO163 GLU164 THR165 LEU166 THR167 GLY168 SER169 LEU170 GLY171 VAL172 ILE173 MET174 GLU175 SER176 VAL177 ASN178 TYR179 SER180 LYS181 LEU182 ALA183 ASP184 LYS185 LEU186 GLY187 ILE188 SER189 PHE190 GLU191 THR192 ILE193 LYS194 SER195 GLY196 ALA197 HIS198 ALA199 ASP200 ILE201 MET202 SER203 PRO204 SER205 ARG206 GLU207 MET208 THR209 LYS210 GLU211 GLU212 LYS213 ASN214 ILE215 MET216 GLN217 SER218 MET219 VAL220 ASP221 ASN222 SER223 TYR224 GLU225 GLY226 PHE227 VAL228 ASP229 VAL230 ILE231 SER232 LYS233 GLY234 ARG235 GLY236 MET237 PRO238 LYS239 ALA240 GLU241 VAL242 LYS243 LYS244 ILE245 ALA246 ASP247 GLY248 ARG249 VAL250 TYR251 ASP252 GLY253 ARG254 GLN255 ALA256 LYS257 LYS258 LEU259 ASN260 LEU261 VAL262 ASP263 GLU264 LEU265 GLY266 PHE267 TYR268 ASP269 ASP270 THR271 ILE272 THR273 ALA274 MET275 LYS276 LYS277 ASP278 HIS279 LYS280 ASP281 LEU282 LYS283 ASN284 ALA285 SER286 VAL287 ILE288 SER289 TYR290 SER326 PRO327 ARG328 MET329 MET330 TYR331 LEU332 TYR333 ALA334
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany