4KUD - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF N-TERMINAL ACETYLATED SIR3 BAH DOMAIN D MUTANT IN COMPLEX WITH YEAST NUCLEOSOME CORE PARTICLE
• Keywords: PROTEPROTEIN-DNA COMPLEX, NUCLEOSOME, BAH DOMAIN, SILENCING, STRUCTURAL PROTEIN-TRANSCRIPTION-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4KUD	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	HISTONE H3	A	96	790	0
2	Protein	HISTONE H4	B	88	709	0
3	Protein	HISTONE H2A.2	C	103	795	0
4	Protein	HISTONE H2B.1	D	93	724	0
5	Protein	HISTONE H3	E	98	808	0
6	Protein	HISTONE H4	F	90	717	0
7	Protein	HISTONE H2A.2	G	105	810	0
8	Protein	HISTONE H2B.1	H	94	735	0
9	Other macromolecule	NUCLOESOME DNA	I	146	2990	0
10	Other macromolecule	NUCLOESOME DNA	J	146	2990	0
11	Protein	REGULATORY PROTEIN SIR3	K	213	1791	8
12	Protein	REGULATORY PROTEIN SIR3	L	213	1791	8
13	Water			66	0	66
total				1551	15650	82

Proteins

Unit 1	PRO 38 HIS 39 ARG 40 TYR 41 LYS 42 PRO 43 GLY 44 THR 45 VAL 46 ALA 47 LEU 48 ARG 49 GLU 50 ILE 51 ARG 52 ARG 53 PHE 54 GLN 55 LYS 56 SER 57 THR 58 GLU 59 LEU 60 LEU 61 ILE 62 ARG 63 LYS 64 LEU 65 PRO 66 PHE 67 GLN 68 ARG 69 LEU 70 VAL 71 ARG 72 GLU 73 ILE 74 ALA 75 GLN 76 ASP 77 PHE 78 LYS 79 THR 80 ASP 81 LEU 82 ARG 83 PHE 84 GLN 85 SER 86 SER 87 ALA 88 ILE 89 GLY 90 ALA 91 LEU 92 GLN 93 GLU 94 SER 95 VAL 96 GLU 97 ALA 98 TYR 99 LEU 100 VAL 101 SER 102 LEU 103 PHE 104 GLU 105 ASP 106 THR 107 ASN 108 LEU 109 ALA 110 ALA 111 ILE 112 HIS 113 ALA 114 LYS 115 ARG 116 VAL 117 THR 118 ILE 119 GLN 120 LYS 121 LYS 122 ASP 123 ILE 124 LYS 125 LEU 126 ALA 127 ARG 128 ARG 129 LEU 130 ARG 131 GLY 132 GLU 133
Unit 2	ALA 15 LYS 16 ARG 17 HIS 18 ARG 19 LYS 20 ILE 21 LEU 22 ARG 23 ASP 24 ASN 25 ILE 26 GLN 27 GLY 28 ILE 29 THR 30 LYS 31 PRO 32 ALA 33 ILE 34 ARG 35 ARG 36 LEU 37 ALA 38 ARG 39 ARG 40 GLY 41 GLY 42 VAL 43 LYS 44 ARG 45 ILE 46 SER 47 GLY 48 LEU 49 ILE 50 TYR 51 GLU 52 GLU 53 VAL 54 ARG 55 ALA 56 VAL 57 LEU 58 LYS 59 SER 60 PHE 61 LEU 62 GLU 63 SER 64 VAL 65 ILE 66 ARG 67 ASP 68 SER 69 VAL 70 THR 71 TYR 72 THR 73 GLU 74 HIS 75 ALA 76 LYS 77 ARG 78 LYS 79 THR 80 VAL 81 THR 82 SER 83 LEU 84 ASP 85 VAL 86 VAL 87 TYR 88 ALA 89 LEU 90 LYS 91 ARG 92 GLN 93 GLY 94 ARG 95 THR 96 LEU 97 TYR 98 GLY 99 PHE 100 GLY 101 GLY 102
Unit 3	GLN 16 SER 17 ARG 18 SER 19 ALA 20 LYS 21 ALA 22 GLY 23 LEU 24 THR 25 PHE 26 PRO 27 VAL 28 GLY 29 ARG 30 VAL 31 HIS 32 ARG 33 LEU 34 LEU 35 ARG 36 ARG 37 GLY 38 ASN 39 TYR 40 ALA 41 GLN 42 ARG 43 ILE 44 GLY 45 SER 46 GLY 47 ALA 48 PRO 49 VAL 50 TYR 51 LEU 52 THR 53 ALA 54 VAL 55 LEU 56 GLU 57 TYR 58 LEU 59 ALA 60 ALA 61 GLU 62 ILE 63 LEU 64 GLU 65 LEU 66 ALA 67 GLY 68 ASN 69 ALA 70 ALA 71 ARG 72 ASP 73 ASN 74 LYS 75 LYS 76 THR 77 ARG 78 ILE 79 ILE 80 PRO 81 ARG 82 HIS 83 LEU 84 GLN 85 LEU 86 ALA 87 ILE 88 ARG 89 ASN 90 ASP 91 ASP 92 GLU 93 LEU 94 ASN 95 LYS 96 LEU 97 LEU 98 GLY 99 ASN 100 VAL 101 THR 102 ILE 103 ALA 104 GLN 105 GLY 106 GLY 107 VAL 108 LEU 109 PRO 110 ASN 111 ILE 112 HIS 113 GLN 114 ASN 115 LEU 116 LEU 117 PRO 118
Unit 4	LYS 37 GLU 38 THR 39 TYR 40 SER 41 SER 42 TYR 43 ILE 44 TYR 45 LYS 46 VAL 47 LEU 48 LYS 49 GLN 50 THR 51 HIS 52 PRO 53 ASP 54 THR 55 GLY 56 ILE 57 SER 58 GLN 59 LYS 60 SER 61 MET 62 SER 63 ILE 64 LEU 65 ASN 66 SER 67 PHE 68 VAL 69 ASN 70 ASP 71 ILE 72 PHE 73 GLU 74 ARG 75 ILE 76 ALA 77 THR 78 GLU 79 ALA 80 SER 81 LYS 82 LEU 83 ALA 84 ALA 85 TYR 86 ASN 87 LYS 88 LYS 89 SER 90 THR 91 ILE 92 SER 93 ALA 94 ARG 95 GLU 96 ILE 97 GLN 98 THR 99 ALA 100 VAL 101 ARG 102 LEU 103 ILE 104 LEU 105 PRO 106 GLY 107 GLU 108 LEU 109 ALA 110 LYS 111 HIS 112 ALA 113 VAL 114 SER 115 GLU 116 GLY 117 THR 118 ARG 119 ALA 120 VAL 121 THR 122 LYS 123 TYR 124 SER 125 SER 126 SER 127 THR 128 GLN 129
Unit 5	LYS 36 LYS 37 PRO 38 HIS 39 ARG 40 TYR 41 LYS 42 PRO 43 GLY 44 THR 45 VAL 46 ALA 47 LEU 48 ARG 49 GLU 50 ILE 51 ARG 52 ARG 53 PHE 54 GLN 55 LYS 56 SER 57 THR 58 GLU 59 LEU 60 LEU 61 ILE 62 ARG 63 LYS 64 LEU 65 PRO 66 PHE 67 GLN 68 ARG 69 LEU 70 VAL 71 ARG 72 GLU 73 ILE 74 ALA 75 GLN 76 ASP 77 PHE 78 LYS 79 THR 80 ASP 81 LEU 82 ARG 83 PHE 84 GLN 85 SER 86 SER 87 ALA 88 ILE 89 GLY 90 ALA 91 LEU 92 GLN 93 GLU 94 SER 95 VAL 96 GLU 97 ALA 98 TYR 99 LEU 100 VAL 101 SER 102 LEU 103 PHE 104 GLU 105 ASP 106 THR 107 ASN 108 LEU 109 ALA 110 ALA 111 ILE 112 HIS 113 ALA 114 LYS 115 ARG 116 VAL 117 THR 118 ILE 119 GLN 120 LYS 121 LYS 122 ASP 123 ILE 124 LYS 125 LEU 126 ALA 127 ARG 128 ARG 129 LEU 130 ARG 131 GLY 132 GLU 133
Unit 6	GLY 13 GLY 14 ALA 15 LYS 16 ARG 17 HIS 18 ARG 19 LYS 20 ILE 21 LEU 22 ARG 23 ASP 24 ASN 25 ILE 26 GLN 27 GLY 28 ILE 29 THR 30 LYS 31 PRO 32 ALA 33 ILE 34 ARG 35 ARG 36 LEU 37 ALA 38 ARG 39 ARG 40 GLY 41 GLY 42 VAL 43 LYS 44 ARG 45 ILE 46 SER 47 GLY 48 LEU 49 ILE 50 TYR 51 GLU 52 GLU 53 VAL 54 ARG 55 ALA 56 VAL 57 LEU 58 LYS 59 SER 60 PHE 61 LEU 62 GLU 63 SER 64 VAL 65 ILE 66 ARG 67 ASP 68 SER 69 VAL 70 THR 71 TYR 72 THR 73 GLU 74 HIS 75 ALA 76 LYS 77 ARG 78 LYS 79 THR 80 VAL 81 THR 82 SER 83 LEU 84 ASP 85 VAL 86 VAL 87 TYR 88 ALA 89 LEU 90 LYS 91 ARG 92 GLN 93 GLY 94 ARG 95 THR 96 LEU 97 TYR 98 GLY 99 PHE 100 GLY 101 GLY 102
Unit 7	SER 15 GLN 16 SER 17 ARG 18 SER 19 ALA 20 LYS 21 ALA 22 GLY 23 LEU 24 THR 25 PHE 26 PRO 27 VAL 28 GLY 29 ARG 30 VAL 31 HIS 32 ARG 33 LEU 34 LEU 35 ARG 36 ARG 37 GLY 38 ASN 39 TYR 40 ALA 41 GLN 42 ARG 43 ILE 44 GLY 45 SER 46 GLY 47 ALA 48 PRO 49 VAL 50 TYR 51 LEU 52 THR 53 ALA 54 VAL 55 LEU 56 GLU 57 TYR 58 LEU 59 ALA 60 ALA 61 GLU 62 ILE 63 LEU 64 GLU 65 LEU 66 ALA 67 GLY 68 ASN 69 ALA 70 ALA 71 ARG 72 ASP 73 ASN 74 LYS 75 LYS 76 THR 77 ARG 78 ILE 79 ILE 80 PRO 81 ARG 82 HIS 83 LEU 84 GLN 85 LEU 86 ALA 87 ILE 88 ARG 89 ASN 90 ASP 91 ASP 92 GLU 93 LEU 94 ASN 95 LYS 96 LEU 97 LEU 98 GLY 99 ASN 100 VAL 101 THR 102 ILE 103 ALA 104 GLN 105 GLY 106 GLY 107 VAL 108 LEU 109 PRO 110 ASN 111 ILE 112 HIS 113 GLN 114 ASN 115 LEU 116 LEU 117 PRO 118 LYS 119
Unit 8	ARG 36 LYS 37 GLU 38 THR 39 TYR 40 SER 41 SER 42 TYR 43 ILE 44 TYR 45 LYS 46 VAL 47 LEU 48 LYS 49 GLN 50 THR 51 HIS 52 PRO 53 ASP 54 THR 55 GLY 56 ILE 57 SER 58 GLN 59 LYS 60 SER 61 MET 62 SER 63 ILE 64 LEU 65 ASN 66 SER 67 PHE 68 VAL 69 ASN 70 ASP 71 ILE 72 PHE 73 GLU 74 ARG 75 ILE 76 ALA 77 THR 78 GLU 79 ALA 80 SER 81 LYS 82 LEU 83 ALA 84 ALA 85 TYR 86 ASN 87 LYS 88 LYS 89 SER 90 THR 91 ILE 92 SER 93 ALA 94 ARG 95 GLU 96 ILE 97 GLN 98 THR 99 ALA 100 VAL 101 ARG 102 LEU 103 ILE 104 LEU 105 PRO 106 GLY 107 GLU 108 LEU 109 ALA 110 LYS 111 HIS 112 ALA 113 VAL 114 SER 115 GLU 116 GLY 117 THR 118 ARG 119 ALA 120 VAL 121 THR 122 LYS 123 TYR 124 SER 125 SER 126 SER 127 THR 128 GLN 129
Unit 11	AYA 2 LYS 3 THR 4 LEU 5 LYS 6 ASP 7 LEU 8 ASP 9 GLY 10 TRP 11 GLN 12 VAL 13 ILE 14 ILE 15 THR 16 ASP 17 ASP 18 GLN 19 GLY 20 ARG 21 VAL 22 ILE 23 ASP 24 ASP 25 ASN 26 ASN 27 ARG 28 ARG 29 ARG 30 SER 31 ARG 32 LYS 33 ARG 34 GLY 35 GLY 36 GLU 37 ASN 38 VAL 39 PHE 40 LEU 41 LYS 42 ARG 43 ILE 44 SER 45 ASP 46 GLY 47 LEU 48 SER 49 PHE 50 GLY 51 LYS 52 GLY 53 GLU 54 SER 55 VAL 56 ILE 57 PHE 58 ASN 59 ASP 60 ASN 61 VAL 62 THR 63 GLU 64 THR 65 TYR 66 SER 67 VAL 68 TYR 69 LEU 70 ILE 71 HIS 72 GLU 73 ILE 74 ARG 75 LEU 76 ASN 77 THR 78 LEU 79 ASN 80 ASN 81 VAL 82 VAL 83 GLU 84 ILE 85 TRP 86 VAL 87 PHE 88 SER 89 TYR 90 LEU 91 ARG 92 TRP 93 PHE 94 GLU 95 LEU 96 LYS 97 PRO 98 LYS 99 LEU 100 TYR 101 TYR 102 GLU 103 GLN 104 PHE 105 ARG 106 PRO 107 ASP 108 LEU 109 ILE 110 LYS 111 GLU 112 ASP 113 HIS 114 PRO 115 LEU 116 GLU 117 PHE 118 TYR 119 LYS 120 ASP 121 LYS 122 PHE 123 PHE 124 ASN 125 GLU 126 VAL 127 ASN 128 LYS 129 SER 130 GLU 131 LEU 132 TYR 133 LEU 134 THR 135 ALA 136 GLU 137 LEU 138 SER 139 GLU 140 ILE 141 TRP 142 LEU 143 LYS 144 ASP 145 PHE 146 ILE 147 ALA 148 VAL 149 GLY 150 GLN 151 ILE 152 LEU 153 PRO 154 GLU 155 SER 156 GLN 157 TRP 158 ASN 159 ASP 160 SER 161 SER 162 ILE 163 ASP 164 LYS 165 ILE 166 GLU 167 ASP 168 ARG 169 ASP 170 PHE 171 LEU 172 VAL 173 ARG 174 TYR 175 ALA 176 CYS 177 GLU 178 PRO 179 THR 180 ALA 181 GLU 182 LYS 183 PHE 184 VAL 185 PRO 186 ILE 187 ASP 188 ILE 189 PHE 190 GLN 191 ILE 192 ILE 193 ARG 194 ARG 195 VAL 196 LYS 197 GLU 198 MET 199 GLU 200 PRO 201 LYS 202 GLN 203 SER 204 ASN 205 GLU 206 TYR 207 LEU 208 LYS 209 ARG 210 VAL 211 SER 212 VAL 213 PRO 214
Unit 12	AYA 2 LYS 3 THR 4 LEU 5 LYS 6 ASP 7 LEU 8 ASP 9 GLY 10 TRP 11 GLN 12 VAL 13 ILE 14 ILE 15 THR 16 ASP 17 ASP 18 GLN 19 GLY 20 ARG 21 VAL 22 ILE 23 ASP 24 ASP 25 ASN 26 ASN 27 ARG 28 ARG 29 ARG 30 SER 31 ARG 32 LYS 33 ARG 34 GLY 35 GLY 36 GLU 37 ASN 38 VAL 39 PHE 40 LEU 41 LYS 42 ARG 43 ILE 44 SER 45 ASP 46 GLY 47 LEU 48 SER 49 PHE 50 GLY 51 LYS 52 GLY 53 GLU 54 SER 55 VAL 56 ILE 57 PHE 58 ASN 59 ASP 60 ASN 61 VAL 62 THR 63 GLU 64 THR 65 TYR 66 SER 67 VAL 68 TYR 69 LEU 70 ILE 71 HIS 72 GLU 73 ILE 74 ARG 75 LEU 76 ASN 77 THR 78 LEU 79 ASN 80 ASN 81 VAL 82 VAL 83 GLU 84 ILE 85 TRP 86 VAL 87 PHE 88 SER 89 TYR 90 LEU 91 ARG 92 TRP 93 PHE 94 GLU 95 LEU 96 LYS 97 PRO 98 LYS 99 LEU 100 TYR 101 TYR 102 GLU 103 GLN 104 PHE 105 ARG 106 PRO 107 ASP 108 LEU 109 ILE 110 LYS 111 GLU 112 ASP 113 HIS 114 PRO 115 LEU 116 GLU 117 PHE 118 TYR 119 LYS 120 ASP 121 LYS 122 PHE 123 PHE 124 ASN 125 GLU 126 VAL 127 ASN 128 LYS 129 SER 130 GLU 131 LEU 132 TYR 133 LEU 134 THR 135 ALA 136 GLU 137 LEU 138 SER 139 GLU 140 ILE 141 TRP 142 LEU 143 LYS 144 ASP 145 PHE 146 ILE 147 ALA 148 VAL 149 GLY 150 GLN 151 ILE 152 LEU 153 PRO 154 GLU 155 SER 156 GLN 157 TRP 158 ASN 159 ASP 160 SER 161 SER 162 ILE 163 ASP 164 LYS 165 ILE 166 GLU 167 ASP 168 ARG 169 ASP 170 PHE 171 LEU 172 VAL 173 ARG 174 TYR 175 ALA 176 CYS 177 GLU 178 PRO 179 THR 180 ALA 181 GLU 182 LYS 183 PHE 184 VAL 185 PRO 186 ILE 187 ASP 188 ILE 189 PHE 190 GLN 191 ILE 192 ILE 193 ARG 194 ARG 195 VAL 196 LYS 197 GLU 198 MET 199 GLU 200 PRO 201 LYS 202 GLN 203 SER 204 ASN 205 GLU 206 TYR 207 LEU 208 LYS 209 ARG 210 VAL 211 SER 212 VAL 213 PRO 214

Other macromolecules

Unit 9

DA 1 DT 2 DC 3 DA 4 DA 5 DT 6 DA 7 DT 8 DC 9 DC 10 DA 11 DC 12 DC 13 DT 14 DG 15 DC 16 DA 17 DG 18 DA 19 DT 20 DT 21 DC 22 DT 23 DA 24 DC 25 DC 26 DA 27 DA 28 DA 29 DA 30 DG 31 DT 32 DG 33 DT 34 DA 35 DT 36 DT 37 DT 38 DG 39 DG 40 DA 41 DA 42 DA 43 DC 44 DT 45 DG 46 DC 47 DT 48 DC 49 DC 50 DA 51 DT 52 DC 53 DA 54 DA 55 DA 56 DA 57 DG 58 DG 59 DC 60 DA 61 DT 62 DG 63 DT 64 DT 65 DC 66 DA 67 DG 68 DC 69 DG 70 DG 71 DA 72 DA 73 DT 74 DT 75 DC 76 DC 77 DG 78 DC 79 DT 80 DG 81 DA 82 DA 83 DC 84 DA 85 DT 86 DG 87 DC 88 DC 89 DT 90 DT 91 DT 92 DT 93 DG 94 DA 95 DT 96 DG 97 DG 98 DA 99 DG 100 DC 101 DA 102 DG 103 DT 104 DT 105 DT 106 DC 107 DC 108 DA 109 DA 110 DA 111 DT 112 DA 113 DC 114 DA 115 DC 116 DT 117 DT 118 DT 119 DT 120 DG 121 DG 122 DT 123 DA 124 DG 125 DA 126 DA 127 DT 128 DC 129 DT 130 DG 131 DC 132 DA 133 DG 134 DG 135 DT 136 DG 137 DG 138 DA 139 DT 140 DA 141 DT 142 DT 143 DG 144 DA 145 DT 146

Unit 10

DA 147 DT 148 DC 149 DA 150 DA 151 DT 152 DA 153 DT 154 DC 155 DC 156 DA 157 DC 158 DC 159 DT 160 DG 161 DC 162 DA 163 DG 164 DA 165 DT 166 DT 167 DC 168 DT 169 DA 170 DC 171 DC 172 DA 173 DA 174 DA 175 DA 176 DG 177 DT 178 DG 179 DT 180 DA 181 DT 182 DT 183 DT 184 DG 185 DG 186 DA 187 DA 188 DA 189 DC 190 DT 191 DG 192 DC 193 DT 194 DC 195 DC 196 DA 197 DT 198 DC 199 DA 200 DA 201 DA 202 DA 203 DG 204 DG 205 DC 206 DA 207 DT 208 DG 209 DT 210 DT 211 DC 212 DA 213 DG 214 DC 215 DG 216 DG 217 DA 218 DA 219 DT 220 DT 221 DC 222 DC 223 DG 224 DC 225 DT 226 DG 227 DA 228 DA 229 DC 230 DA 231 DT 232 DG 233 DC 234 DC 235 DT 236 DT 237 DT 238 DT 239 DG 240 DA 241 DT 242 DG 243 DG 244 DA 245 DG 246 DC 247 DA 248 DG 249 DT 250 DT 251 DT 252 DC 253 DC 254 DA 255 DA 256 DA 257 DT 258 DA 259 DC 260 DA 261 DC 262 DT 263 DT 264 DT 265 DT 266 DG 267 DG 268 DT 269 DA 270 DG 271 DA 272 DA 273 DT 274 DC 275 DT 276 DG 277 DC 278 DA 279 DG 280 DG 281 DT 282 DG 283 DG 284 DA 285 DT 286 DA 287 DT 288 DT 289 DG 290 DA 291 DT 292