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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A 4-THIOURIDINE SYNTHETASE - RNA COMPLE BOUND ATP
Keywords TRNA MODIFICATION, THIOURIDINE, SULFURTRANSFERASE, ADENYLATI DOMAIN, PP-LOOP MOTIF, 4-THIOURIDINE SYNTHESIS, TRANSFERASE COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4KR7     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROBABLE TRNA SULFURTRANSFERASE  A 386 3099 0
2  Protein   PROBABLE TRNA SULFURTRANSFERASE  B 386 3099 0
3  RNA    M 39 831 0
4  RNA    X 39 831 0
5  Ligand   PROBABLE TRNA SULFURTRANSFERASE  A 2 0 32
6  Ligand   PROBABLE TRNA SULFURTRANSFERASE  B 2 0 32
total       854 7860 64
Proteins
Unit 1 GLU3 LEU4 ARG5 VAL6 TYR7 ILE8 VAL9 ARG10 TYR11 SER12 GLU13 ILE14 GLY15 LEU16 LYS17 GLY18 LYS19 ASN20 ARG21 LYS22 ASP23 PHE24 GLU25 GLU26 ALA27 LEU28 ARG29 ARG30 ASN31 ILE32 GLU33 ARG34 VAL35 THR36 GLY37 MET38 LYS39 VAL40 LYS41 ARG42 GLN43 TRP44 GLY45 ARG46 PHE47 LEU48 ILE49 PRO50 ILE51 ASP52 GLU53 ASN54 VAL55 THR56 LEU57 ASP58 ASP59 LYS60 LEU61 LYS62 LYS63 ILE64 PHE65 GLY66 ILE67 GLN68 ASN69 PHE70 SER71 LYS72 GLY73 PHE74 LEU75 VAL76 SER77 HIS78 ASP79 PHE80 GLU81 GLU82 VAL83 LYS84 LYS85 TYR86 SER87 LEU88 ILE89 ALA90 VAL91 LYS92 GLU93 LYS94 LEU95 GLU96 LYS97 GLY98 ASN99 TYR100 ARG101 THR102 PHE103 LYS104 VAL105 GLN106 ALA107 LYS108 LYS109 ALA110 TYR111 LYS112 GLU113 TYR114 LYS115 LYS116 GLY117 VAL118 TYR119 GLU120 ILE121 ASN122 SER123 GLU124 LEU125 GLY126 ALA127 LEU128 ILE129 LEU130 LYS131 ASN132 PHE133 LYS134 GLU135 LEU136 SER137 VAL138 ASP139 VAL140 ARG141 ASN142 PRO143 ASP144 PHE145 VAL146 LEU147 GLY148 VAL149 GLU150 VAL151 ARG152 PRO153 GLU154 GLY155 VAL156 LEU157 ILE158 PHE159 THR160 ASP161 ARG162 VAL163 GLU164 CYS165 TYR166 GLY167 GLY168 LEU169 PRO170 VAL171 GLY172 THR173 GLY174 GLY175 LYS176 ALA177 VAL178 LEU179 LEU180 LEU181 SER182 GLY183 GLY184 ILE185 ASP186 SER187 PRO188 VAL189 ALA190 GLY191 TRP192 TYR193 ALA194 LEU195 LYS196 ARG197 GLY198 VAL199 LEU200 ILE201 GLU202 SER203 VAL204 THR205 PHE206 VAL207 SER208 PRO209 PRO210 PHE211 THR212 SER213 GLU214 GLY215 ALA216 VAL217 GLU218 LYS219 VAL220 ARG221 ASP222 ILE223 LEU224 ARG225 VAL226 LEU227 ARG228 GLU229 PHE230 SER231 GLY232 GLY233 HIS234 PRO235 LEU236 ARG237 LEU238 HIS239 ILE240 VAL241 ASN242 LEU243 THR244 LYS245 LEU246 GLN247 LEU248 GLU249 VAL250 LYS251 LYS252 ARG253 VAL254 PRO255 ASP256 LYS257 TYR258 SER259 LEU260 ILE261 MET262 TYR263 ARG264 ARG265 SER266 MET267 PHE268 ARG269 ILE270 ALA271 GLU272 LYS273 ILE274 ALA275 GLU276 GLU277 THR278 GLY279 ALA280 VAL281 ALA282 PHE283 TYR284 THR285 GLY286 GLU287 ASN288 ILE289 GLY290 GLN291 VAL292 ALA293 SER294 GLN295 THR296 LEU297 GLU298 ASN299 LEU300 TRP301 SER302 ILE303 GLU304 SER305 VAL306 THR307 THR308 ARG309 PRO310 VAL311 ILE312 ARG313 PRO314 LEU315 SER316 GLY317 PHE318 ASP319 LYS320 THR321 GLU322 ILE323 VAL324 GLU325 LYS326 ALA327 LYS328 GLU329 ILE330 GLY331 THR332 TYR333 GLU334 ILE335 SER336 ILE337 LYS338 PRO339 TYR340 GLN341 ASP342 SER343 CYS344 VAL345 PHE346 PHE347 ALA348 PRO349 LYS350 ASN351 PRO352 ALA353 THR354 ARG355 SER356 HIS357 PRO358 SER359 ILE360 LEU361 GLU362 LYS363 LEU364 GLU365 GLN366 GLN367 VAL368 PRO369 ASP370 LEU371 PRO372 VAL373 LEU374 GLU375 GLU376 GLU377 ALA378 PHE379 THR380 SER381 ARG382 LYS383 VAL384 GLU385 VAL386 ILE387 GLU388
Unit 2 GLU3 LEU4 ARG5 VAL6 TYR7 ILE8 VAL9 ARG10 TYR11 SER12 GLU13 ILE14 GLY15 LEU16 LYS17 GLY18 LYS19 ASN20 ARG21 LYS22 ASP23 PHE24 GLU25 GLU26 ALA27 LEU28 ARG29 ARG30 ASN31 ILE32 GLU33 ARG34 VAL35 THR36 GLY37 MET38 LYS39 VAL40 LYS41 ARG42 GLN43 TRP44 GLY45 ARG46 PHE47 LEU48 ILE49 PRO50 ILE51 ASP52 GLU53 ASN54 VAL55 THR56 LEU57 ASP58 ASP59 LYS60 LEU61 LYS62 LYS63 ILE64 PHE65 GLY66 ILE67 GLN68 ASN69 PHE70 SER71 LYS72 GLY73 PHE74 LEU75 VAL76 SER77 HIS78 ASP79 PHE80 GLU81 GLU82 VAL83 LYS84 LYS85 TYR86 SER87 LEU88 ILE89 ALA90 VAL91 LYS92 GLU93 LYS94 LEU95 GLU96 LYS97 GLY98 ASN99 TYR100 ARG101 THR102 PHE103 LYS104 VAL105 GLN106 ALA107 LYS108 LYS109 ALA110 TYR111 LYS112 GLU113 TYR114 LYS115 LYS116 GLY117 VAL118 TYR119 GLU120 ILE121 ASN122 SER123 GLU124 LEU125 GLY126 ALA127 LEU128 ILE129 LEU130 LYS131 ASN132 PHE133 LYS134 GLU135 LEU136 SER137 VAL138 ASP139 VAL140 ARG141 ASN142 PRO143 ASP144 PHE145 VAL146 LEU147 GLY148 VAL149 GLU150 VAL151 ARG152 PRO153 GLU154 GLY155 VAL156 LEU157 ILE158 PHE159 THR160 ASP161 ARG162 VAL163 GLU164 CYS165 TYR166 GLY167 GLY168 LEU169 PRO170 VAL171 GLY172 THR173 GLY174 GLY175 LYS176 ALA177 VAL178 LEU179 LEU180 LEU181 SER182 GLY183 GLY184 ILE185 ASP186 SER187 PRO188 VAL189 ALA190 GLY191 TRP192 TYR193 ALA194 LEU195 LYS196 ARG197 GLY198 VAL199 LEU200 ILE201 GLU202 SER203 VAL204 THR205 PHE206 VAL207 SER208 PRO209 PRO210 PHE211 THR212 SER213 GLU214 GLY215 ALA216 VAL217 GLU218 LYS219 VAL220 ARG221 ASP222 ILE223 LEU224 ARG225 VAL226 LEU227 ARG228 GLU229 PHE230 SER231 GLY232 GLY233 HIS234 PRO235 LEU236 ARG237 LEU238 HIS239 ILE240 VAL241 ASN242 LEU243 THR244 LYS245 LEU246 GLN247 LEU248 GLU249 VAL250 LYS251 LYS252 ARG253 VAL254 PRO255 ASP256 LYS257 TYR258 SER259 LEU260 ILE261 MET262 TYR263 ARG264 ARG265 SER266 MET267 PHE268 ARG269 ILE270 ALA271 GLU272 LYS273 ILE274 ALA275 GLU276 GLU277 THR278 GLY279 ALA280 VAL281 ALA282 PHE283 TYR284 THR285 GLY286 GLU287 ASN288 ILE289 GLY290 GLN291 VAL292 ALA293 SER294 GLN295 THR296 LEU297 GLU298 ASN299 LEU300 TRP301 SER302 ILE303 GLU304 SER305 VAL306 THR307 THR308 ARG309 PRO310 VAL311 ILE312 ARG313 PRO314 LEU315 SER316 GLY317 PHE318 ASP319 LYS320 THR321 GLU322 ILE323 VAL324 GLU325 LYS326 ALA327 LYS328 GLU329 ILE330 GLY331 THR332 TYR333 GLU334 ILE335 SER336 ILE337 LYS338 PRO339 TYR340 GLN341 ASP342 SER343 CYS344 VAL345 PHE346 PHE347 ALA348 PRO349 LYS350 ASN351 PRO352 ALA353 THR354 ARG355 SER356 HIS357 PRO358 SER359 ILE360 LEU361 GLU362 LYS363 LEU364 GLU365 GLN366 GLN367 VAL368 PRO369 ASP370 LEU371 PRO372 VAL373 LEU374 GLU375 GLU376 GLU377 ALA378 PHE379 THR380 SER381 ARG382 LYS383 VAL384 GLU385 VAL386 ILE387 GLU388
Nucleic acids
Unit 3 G1 C2 C3 C4 G5 G6 A7 U8 A9 G10 U11 G12 U13 C14 C15 U16 U17 G18 G19 G20 A21 A22 A23 C24 C25 A26 A27 G28 U29 C30 C31 G32 G33 G34 C35 A36 C37 C38 A39
Unit 4 G1 C2 C3 C4 G5 G6 A7 U8 A9 G10 U11 G12 U13 C14 C15 U16 U17 G18 G19 G20 A21 A22 A23 C24 C25 A26 A27 G28 U29 C30 C31 G32 G33 G34 C35 A36 C37 C38 A39
Ligands
Unit 5 ATP401 MG402
Unit 6 ATP401 MG402
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany