4KR6 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF A 4-THIOURIDINE SYNTHETASE - RNA COMPLE
• Keywords: TRNA MODIFICATION, THIOURIDINE, SULFURTRANSFERASE, ADENYLATI DOMAIN, PP-LOOP MOTIF, 4-THIOURIDINE SYNTHESIS, TRANSFERASE COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4KR6	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PROBABLE TRNA SULFURTRANSFERASE	A	388	3116	0
2	Protein	PROBABLE TRNA SULFURTRANSFERASE	B	388	3116	0
3	RNA		C	39	831	0
4	RNA		D	39	835	0
5	Ligand	PROBABLE TRNA SULFURTRANSFERASE	A	3	0	3
6	Ligand	PROBABLE TRNA SULFURTRANSFERASE	B	1	0	1
7	Water			75	0	75
total				933	7898	79

Proteins

Unit 1

MET 1 GLU 2 GLU 3 LEU 4 ARG 5 VAL 6 TYR 7 ILE 8 VAL 9 ARG 10 TYR 11 SER 12 GLU 13 ILE 14 GLY 15 LEU 16 LYS 17 GLY 18 LYS 19 ASN 20 ARG 21 LYS 22 ASP 23 PHE 24 GLU 25 GLU 26 ALA 27 LEU 28 ARG 29 ARG 30 ASN 31 ILE 32 GLU 33 ARG 34 VAL 35 THR 36 GLY 37 MET 38 LYS 39 VAL 40 LYS 41 ARG 42 GLN 43 TRP 44 GLY 45 ARG 46 PHE 47 LEU 48 ILE 49 PRO 50 ILE 51 ASP 52 GLU 53 ASN 54 VAL 55 THR 56 LEU 57 ASP 58 ASP 59 LYS 60 LEU 61 LYS 62 LYS 63 ILE 64 PHE 65 GLY 66 ILE 67 GLN 68 ASN 69 PHE 70 SER 71 LYS 72 GLY 73 PHE 74 LEU 75 VAL 76 SER 77 HIS 78 ASP 79 PHE 80 GLU 81 GLU 82 VAL 83 LYS 84 LYS 85 TYR 86 SER 87 LEU 88 ILE 89 ALA 90 VAL 91 LYS 92 GLU 93 LYS 94 LEU 95 GLU 96 LYS 97 GLY 98 ASN 99 TYR 100 ARG 101 THR 102 PHE 103 LYS 104 VAL 105 GLN 106 ALA 107 LYS 108 LYS 109 ALA 110 TYR 111 LYS 112 GLU 113 TYR 114 LYS 115 LYS 116 GLY 117 VAL 118 TYR 119 GLU 120 ILE 121 ASN 122 SER 123 GLU 124 LEU 125 GLY 126 ALA 127 LEU 128 ILE 129 LEU 130 LYS 131 ASN 132 PHE 133 LYS 134 GLU 135 LEU 136 SER 137 VAL 138 ASP 139 VAL 140 ARG 141 ASN 142 PRO 143 ASP 144 PHE 145 VAL 146 LEU 147 GLY 148 VAL 149 GLU 150 VAL 151 ARG 152 PRO 153 GLU 154 GLY 155 VAL 156 LEU 157 ILE 158 PHE 159 THR 160 ASP 161 ARG 162 VAL 163 GLU 164 CYS 165 TYR 166 GLY 167 GLY 168 LEU 169 PRO 170 VAL 171 GLY 172 THR 173 GLY 174 GLY 175 LYS 176 ALA 177 VAL 178 LEU 179 LEU 180 LEU 181 SER 182 GLY 183 GLY 184 ILE 185 ASP 186 SER 187 PRO 188 VAL 189 ALA 190 GLY 191 TRP 192 TYR 193 ALA 194 LEU 195 LYS 196 ARG 197 GLY 198 VAL 199 LEU 200 ILE 201 GLU 202 SER 203 VAL 204 THR 205 PHE 206 VAL 207 SER 208 PRO 209 PRO 210 PHE 211 THR 212 SER 213 GLU 214 GLY 215 ALA 216 VAL 217 GLU 218 LYS 219 VAL 220 ARG 221 ASP 222 ILE 223 LEU 224 ARG 225 VAL 226 LEU 227 ARG 228 GLU 229 PHE 230 SER 231 GLY 232 GLY 233 HIS 234 PRO 235 LEU 236 ARG 237 LEU 238 HIS 239 ILE 240 VAL 241 ASN 242 LEU 243 THR 244 LYS 245 LEU 246 GLN 247 LEU 248 GLU 249 VAL 250 LYS 251 LYS 252 ARG 253 VAL 254 PRO 255 ASP 256 LYS 257 TYR 258 SER 259 LEU 260 ILE 261 MET 262 TYR 263 ARG 264 ARG 265 SER 266 MET 267 PHE 268 ARG 269 ILE 270 ALA 271 GLU 272 LYS 273 ILE 274 ALA 275 GLU 276 GLU 277 THR 278 GLY 279 ALA 280 VAL 281 ALA 282 PHE 283 TYR 284 THR 285 GLY 286 GLU 287 ASN 288 ILE 289 GLY 290 GLN 291 VAL 292 ALA 293 SER 294 GLN 295 THR 296 LEU 297 GLU 298 ASN 299 LEU 300 TRP 301 SER 302 ILE 303 GLU 304 SER 305 VAL 306 THR 307 THR 308 ARG 309 PRO 310 VAL 311 ILE 312 ARG 313 PRO 314 LEU 315 SER 316 GLY 317 PHE 318 ASP 319 LYS 320 THR 321 GLU 322 ILE 323 VAL 324 GLU 325 LYS 326 ALA 327 LYS 328 GLU 329 ILE 330 GLY 331 THR 332 TYR 333 GLU 334 ILE 335 SER 336 ILE 337 LYS 338 PRO 339 TYR 340 GLN 341 ASP 342 SER 343 CYS 344 VAL 345 PHE 346 PHE 347 ALA 348 PRO 349 LYS 350 ASN 351 PRO 352 ALA 353 THR 354 ARG 355 SER 356 HIS 357 PRO 358 SER 359 ILE 360 LEU 361 GLU 362 LYS 363 LEU 364 GLU 365 GLN 366 GLN 367 VAL 368 PRO 369 ASP 370 LEU 371 PRO 372 VAL 373 LEU 374 GLU 375 GLU 376 GLU 377 ALA 378 PHE 379 THR 380 SER 381 ARG 382 LYS 383 VAL 384 GLU 385 VAL 386 ILE 387 GLU 388

Unit 2

MET 1 GLU 2 GLU 3 LEU 4 ARG 5 VAL 6 TYR 7 ILE 8 VAL 9 ARG 10 TYR 11 SER 12 GLU 13 ILE 14 GLY 15 LEU 16 LYS 17 GLY 18 LYS 19 ASN 20 ARG 21 LYS 22 ASP 23 PHE 24 GLU 25 GLU 26 ALA 27 LEU 28 ARG 29 ARG 30 ASN 31 ILE 32 GLU 33 ARG 34 VAL 35 THR 36 GLY 37 MET 38 LYS 39 VAL 40 LYS 41 ARG 42 GLN 43 TRP 44 GLY 45 ARG 46 PHE 47 LEU 48 ILE 49 PRO 50 ILE 51 ASP 52 GLU 53 ASN 54 VAL 55 THR 56 LEU 57 ASP 58 ASP 59 LYS 60 LEU 61 LYS 62 LYS 63 ILE 64 PHE 65 GLY 66 ILE 67 GLN 68 ASN 69 PHE 70 SER 71 LYS 72 GLY 73 PHE 74 LEU 75 VAL 76 SER 77 HIS 78 ASP 79 PHE 80 GLU 81 GLU 82 VAL 83 LYS 84 LYS 85 TYR 86 SER 87 LEU 88 ILE 89 ALA 90 VAL 91 LYS 92 GLU 93 LYS 94 LEU 95 GLU 96 LYS 97 GLY 98 ASN 99 TYR 100 ARG 101 THR 102 PHE 103 LYS 104 VAL 105 GLN 106 ALA 107 LYS 108 LYS 109 ALA 110 TYR 111 LYS 112 GLU 113 TYR 114 LYS 115 LYS 116 GLY 117 VAL 118 TYR 119 GLU 120 ILE 121 ASN 122 SER 123 GLU 124 LEU 125 GLY 126 ALA 127 LEU 128 ILE 129 LEU 130 LYS 131 ASN 132 PHE 133 LYS 134 GLU 135 LEU 136 SER 137 VAL 138 ASP 139 VAL 140 ARG 141 ASN 142 PRO 143 ASP 144 PHE 145 VAL 146 LEU 147 GLY 148 VAL 149 GLU 150 VAL 151 ARG 152 PRO 153 GLU 154 GLY 155 VAL 156 LEU 157 ILE 158 PHE 159 THR 160 ASP 161 ARG 162 VAL 163 GLU 164 CYS 165 TYR 166 GLY 167 GLY 168 LEU 169 PRO 170 VAL 171 GLY 172 THR 173 GLY 174 GLY 175 LYS 176 ALA 177 VAL 178 LEU 179 LEU 180 LEU 181 SER 182 GLY 183 GLY 184 ILE 185 ASP 186 SER 187 PRO 188 VAL 189 ALA 190 GLY 191 TRP 192 TYR 193 ALA 194 LEU 195 LYS 196 ARG 197 GLY 198 VAL 199 LEU 200 ILE 201 GLU 202 SER 203 VAL 204 THR 205 PHE 206 VAL 207 SER 208 PRO 209 PRO 210 PHE 211 THR 212 SER 213 GLU 214 GLY 215 ALA 216 VAL 217 GLU 218 LYS 219 VAL 220 ARG 221 ASP 222 ILE 223 LEU 224 ARG 225 VAL 226 LEU 227 ARG 228 GLU 229 PHE 230 SER 231 GLY 232 GLY 233 HIS 234 PRO 235 LEU 236 ARG 237 LEU 238 HIS 239 ILE 240 VAL 241 ASN 242 LEU 243 THR 244 LYS 245 LEU 246 GLN 247 LEU 248 GLU 249 VAL 250 LYS 251 LYS 252 ARG 253 VAL 254 PRO 255 ASP 256 LYS 257 TYR 258 SER 259 LEU 260 ILE 261 MET 262 TYR 263 ARG 264 ARG 265 SER 266 MET 267 PHE 268 ARG 269 ILE 270 ALA 271 GLU 272 LYS 273 ILE 274 ALA 275 GLU 276 GLU 277 THR 278 GLY 279 ALA 280 VAL 281 ALA 282 PHE 283 TYR 284 THR 285 GLY 286 GLU 287 ASN 288 ILE 289 GLY 290 GLN 291 VAL 292 ALA 293 SER 294 GLN 295 THR 296 LEU 297 GLU 298 ASN 299 LEU 300 TRP 301 SER 302 ILE 303 GLU 304 SER 305 VAL 306 THR 307 THR 308 ARG 309 PRO 310 VAL 311 ILE 312 ARG 313 PRO 314 LEU 315 SER 316 GLY 317 PHE 318 ASP 319 LYS 320 THR 321 GLU 322 ILE 323 VAL 324 GLU 325 LYS 326 ALA 327 LYS 328 GLU 329 ILE 330 GLY 331 THR 332 TYR 333 GLU 334 ILE 335 SER 336 ILE 337 LYS 338 PRO 339 TYR 340 GLN 341 ASP 342 SER 343 CYS 344 VAL 345 PHE 346 PHE 347 ALA 348 PRO 349 LYS 350 ASN 351 PRO 352 ALA 353 THR 354 ARG 355 SER 356 HIS 357 PRO 358 SER 359 ILE 360 LEU 361 GLU 362 LYS 363 LEU 364 GLU 365 GLN 366 GLN 367 VAL 368 PRO 369 ASP 370 LEU 371 PRO 372 VAL 373 LEU 374 GLU 375 GLU 376 GLU 377 ALA 378 PHE 379 THR 380 SER 381 ARG 382 LYS 383 VAL 384 GLU 385 VAL 386 ILE 387 GLU 388

Nucleic acids

Unit 3	G 1 C 2 C 3 C 4 G 5 G 6 A 7 U 8 A 9 G 10 U 11 G 12 U 13 C 14 C 15 U 16 U 17 G 18 G 19 G 20 A 21 A 22 A 23 C 24 C 25 A 26 A 27 G 28 U 29 C 30 C 31 G 32 G 33 G 34 C 35 A 36 C 37 C 38 A 39
Unit 4	G 1 C 2 C 3 C 4 G 5 G 6 A 7 U 8 A 9 G 10 U 11 G 12 U 13 C 14 C 15 U 16 U 17 G 18 G 19 G 20 A 21 A 22 A 23 C 24 C 25 A 26 A 27 G 28 U 29 C 30 C 31 G 32 G 33 G 34 C 35 A 36 C 37 C 38 A 39

Ligands

Unit 5	HG 401 HG 402 HG 403
Unit 6	HG 401