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| Title | DNA BINDING PROTEIN AND DNA COMPLEX STRUCTURE | |
| Keywords | ARGONAUTE, RNA INTERFERENCE, DNA INTERFERENCE, DNA BINDING P DNA COMPLEX | |
| Experiment | X-ray diffraction | |
| Number of Models | 1 |
| Database | ID code | Status | Coordinate files | ||
| Header | Asymmetric unit | Biological unit | |||
| PDB | 4KPY | released | available | available | Quaternary Structure Server |
| Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
|---|---|---|---|---|---|---|
| 1 | Protein | UNCHARACTERIZED PROTEIN | A | 676 | 5278 | 0 |
| 2 | Protein | UNCHARACTERIZED PROTEIN | B | 675 | 5264 | 0 |
| 3 | Other macromolecule | DNA (5'- D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*A 3') | C | 16 | 338 | 0 |
| 4 | Other macromolecule | DNA (5'-D(P*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3') | D | 10 | 201 | 0 |
| 5 | Other macromolecule | DNA (5'- D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*A 3') | E | 16 | 338 | 0 |
| 6 | Other macromolecule | DNA (5'-D(P*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3') | F | 10 | 201 | 0 |
| 7 | Other macromolecule | DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*CP*C)-3') | M | 6 | 120 | 0 |
| 8 | Other macromolecule | DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*CP*C)-3') | N | 6 | 116 | 0 |
| 9 | Ligand | UNCHARACTERIZED PROTEIN | A | 3 | 0 | 23 |
| 10 | Ligand | UNCHARACTERIZED PROTEIN | B | 3 | 0 | 23 |
| 11 | Ligand | DNA (5'- D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*A 3') | C | 1 | 0 | 1 |
| 12 | Ligand | DNA (5'- D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*A 3') | E | 1 | 0 | 1 |
| 13 | Water | 356 | 0 | 356 | ||
| total | 1779 | 11856 | 404 |
| Unit 1 | MET1 ASN2 HIS3 LEU4 GLY5 LYS6 THR7 GLU8 VAL9 PHE10 LEU11 ASN12 ARG13 PHE14 ALA15 LEU16 ARG17 PRO18 LEU19 ASN20 PRO21 GLU22 GLU23 LEU24 ARG25 PRO26 TRP27 ARG28 LEU29 GLU30 VAL31 VAL32 LEU33 ASP34 PRO35 PRO36 PRO37 GLY38 ARG39 GLU40 GLU41 VAL42 TYR43 PRO44 LEU45 LEU46 ALA47 GLN48 VAL49 ALA50 ARG51 ARG52 ALA53 GLY54 GLY55 VAL56 THR57 VAL58 ARG59 MET60 GLY61 ASP62 GLY63 LEU64 ALA65 SER66 TRP67 SER68 PRO69 PRO70 GLU71 VAL72 LEU73 VAL74 LEU75 GLU76 GLY77 THR78 LEU79 ALA80 ARG81 MET82 GLY83 GLN84 THR85 TYR86 ALA87 TYR88 ARG89 LEU90 TYR91 PRO92 LYS93 GLY94 ARG95 ARG96 PRO97 LEU98 ASP99 PRO100 LYS101 ASP102 PRO103 GLY104 GLU105 ARG106 SER107 VAL108 LEU109 SER110 ALA111 LEU112 ALA113 ARG114 ARG115 LEU116 LEU117 GLN118 GLU119 ARG120 LEU121 ARG122 ARG123 LEU124 GLU125 GLY126 VAL127 TRP128 VAL129 GLU130 GLY131 LEU132 ALA133 VAL134 TYR135 ARG136 ARG137 GLU138 HIS139 ALA140 ARG141 GLY142 PRO143 GLY144 TRP145 ARG146 VAL147 LEU148 GLY149 GLY150 ALA151 VAL152 LEU153 ASP154 LEU155 TRP156 VAL157 SER158 ASP159 SER160 GLY161 ALA162 PHE163 LEU164 LEU165 GLU166 VAL167 ASP168 PRO169 ALA170 TYR171 ARG172 ILE173 LEU174 CYS175 GLU176 MET177 SER178 LEU179 GLU180 ALA181 TRP182 LEU183 ALA184 GLN185 GLY186 HIS187 PRO188 LEU189 PRO190 LYS191 ARG192 VAL193 ARG194 ASN195 ALA196 TYR197 ASP198 ARG199 ARG200 THR201 TRP202 GLU203 LEU204 LEU205 ARG206 LEU207 GLY208 GLU209 GLU210 ASP211 PRO212 LYS213 GLU214 LEU215 PRO216 LEU217 PRO218 GLY219 GLY220 LEU221 SER222 LEU223 LEU224 ASP225 TYR226 HIS227 ALA228 SER229 LYS230 GLY231 ARG232 LEU233 GLN234 GLY235 ARG236 GLU237 GLY238 GLY239 ARG240 VAL241 ALA242 TRP243 VAL244 ALA245 ASP246 PRO247 LYS252 PRO253 ILE254 PRO255 HIS256 LEU257 THR258 GLY259 LEU260 LEU261 VAL262 PRO263 VAL264 LEU265 THR266 LEU267 GLU268 ASP269 LEU270 SER276 LEU277 ALA278 LEU279 SER280 LEU281 PRO282 TRP283 GLU284 GLU285 ARG286 ARG287 ARG288 ARG289 THR290 ARG291 GLU292 ILE293 ALA294 SER295 TRP296 ILE297 GLY298 ARG299 ARG300 LEU301 GLY302 LEU303 GLY304 THR305 PRO306 GLU307 ALA308 VAL309 ARG310 ALA311 GLN312 ALA313 TYR314 ARG315 LEU316 SER317 ILE318 PRO319 LYS320 LEU321 MET322 GLY323 ARG324 ARG325 ALA326 VAL327 SER328 LYS329 PRO330 ALA331 ASP332 ALA333 LEU334 ARG335 VAL336 GLY337 PHE338 TYR339 ARG340 ALA341 GLN342 GLU343 THR344 ALA345 LEU346 ALA347 LEU348 LEU349 ARG350 LEU351 ASP352 GLY353 ALA354 GLN355 GLY356 TRP357 PRO358 GLU359 PHE360 LEU361 ARG362 ARG363 ALA364 LEU365 LEU366 ARG367 ALA368 PHE369 GLY370 ALA371 SER372 GLY373 ALA374 SER375 LEU376 ARG377 LEU378 HIS379 THR380 LEU381 HIS382 ALA383 HIS384 PRO385 SER386 GLN387 GLY388 LEU389 ALA390 PHE391 ARG392 GLU393 ALA394 LEU395 ARG396 LYS397 ALA398 LYS399 GLU400 GLU401 GLY402 VAL403 GLN404 ALA405 VAL406 LEU407 VAL408 LEU409 THR410 PRO411 PRO412 MET413 ALA414 TRP415 GLU416 ASP417 ARG418 ASN419 ARG420 LEU421 LYS422 ALA423 LEU424 LEU425 LEU426 ARG427 GLU428 GLY429 LEU430 PRO431 SER432 GLN433 ILE434 LEU435 ASN436 VAL437 PRO438 LEU439 ARG440 GLU441 GLU442 GLU443 ARG444 HIS445 ARG446 TRP447 GLU448 ASN449 ALA450 LEU451 LEU452 GLY453 LEU454 LEU455 ALA456 LYS457 ALA458 GLY459 LEU460 GLN461 VAL462 VAL463 ALA464 LEU465 SER466 GLY467 ALA468 TYR469 PRO470 ALA471 GLU472 LEU473 ALA474 VAL475 GLY476 PHE477 ASP478 ALA479 GLY480 GLY481 ARG482 GLU483 SER484 PHE485 ARG486 PHE487 GLY488 GLY489 ALA490 ALA491 CYS492 ALA493 VAL494 GLY495 GLY496 ASP497 GLY498 GLY499 HIS500 LEU501 LEU502 TRP503 THR504 LEU505 PRO506 GLU507 ALA508 GLN509 ALA510 GLY511 GLU512 ARG513 ILE514 PRO515 GLN516 GLU517 VAL518 VAL519 TRP520 ASP521 LEU522 LEU523 GLU524 GLU525 THR526 LEU527 TRP528 ALA529 PHE530 ARG531 ARG532 LYS533 ALA534 GLY535 ARG536 LEU537 PRO538 SER539 ARG540 VAL541 LEU542 LEU543 LEU544 ARG545 ASP546 GLY547 ARG548 VAL549 PRO550 GLN551 ASP552 GLU553 PHE554 ALA555 LEU556 ALA557 LEU558 GLU559 ALA560 LEU561 ALA562 ARG563 GLU564 GLY565 ILE566 ALA567 TYR568 ASP569 LEU570 VAL571 SER572 VAL573 ARG574 LYS575 SER576 GLY577 GLY578 GLY579 ARG580 VAL581 TYR582 PRO583 VAL584 GLN585 GLY586 ARG587 LEU588 ALA589 ASP590 GLY591 LEU592 TYR593 VAL594 PRO595 LEU596 GLU597 ASP598 LYS599 THR600 PHE601 LEU602 LEU603 LEU604 THR605 VAL606 HIS607 ARG608 ASP609 PHE610 ARG611 GLY612 THR613 PRO614 ARG615 PRO616 LEU617 LYS618 LEU619 VAL620 HIS621 GLU622 ALA623 GLY624 ASP625 THR626 PRO627 LEU628 GLU629 ALA630 LEU631 ALA632 HIS633 GLN634 ILE635 PHE636 HIS637 LEU638 THR639 ARG640 LEU641 TYR642 PRO643 ALA644 SER645 GLY646 PHE647 ALA648 PHE649 PRO650 ARG651 LEU652 PRO653 ALA654 PRO655 LEU656 HIS657 LEU658 ALA659 ASP660 ARG661 LEU662 VAL663 LYS664 GLU665 VAL666 GLY667 ARG668 LEU669 GLY670 ILE671 ARG672 HIS673 LEU674 LYS675 GLU676 VAL677 ASP678 ARG679 GLU680 LYS681 LEU682 PHE683 PHE684 VAL685 |
| Unit 2 | HIS3 LEU4 GLY5 LYS6 THR7 GLU8 VAL9 PHE10 LEU11 ASN12 ARG13 PHE14 ALA15 LEU16 ARG17 PRO18 LEU19 ASN20 PRO21 GLU22 GLU23 LEU24 ARG25 PRO26 TRP27 ARG28 LEU29 GLU30 VAL31 VAL32 LEU33 ASP34 PRO35 PRO36 PRO37 GLY38 ARG39 GLU40 GLU41 VAL42 TYR43 PRO44 LEU45 LEU46 ALA47 GLN48 VAL49 ALA50 ARG51 ARG52 ALA53 GLY54 GLY55 VAL56 THR57 VAL58 ARG59 MET60 GLY61 ASP62 GLY63 LEU64 ALA65 SER66 TRP67 SER68 PRO69 PRO70 GLU71 VAL72 LEU73 VAL74 LEU75 GLU76 GLY77 THR78 LEU79 ALA80 ARG81 MET82 GLY83 GLN84 THR85 TYR86 ALA87 TYR88 ARG89 LEU90 TYR91 PRO92 LYS93 GLY94 ARG95 ARG96 PRO97 LEU98 ASP99 PRO100 LYS101 ASP102 PRO103 GLY104 GLU105 ARG106 SER107 VAL108 LEU109 SER110 ALA111 LEU112 ALA113 ARG114 ARG115 LEU116 LEU117 GLN118 GLU119 ARG120 LEU121 ARG122 ARG123 LEU124 GLU125 GLY126 VAL127 TRP128 VAL129 GLU130 GLY131 LEU132 ALA133 VAL134 TYR135 ARG136 ARG137 GLU138 HIS139 ALA140 ARG141 GLY142 PRO143 GLY144 TRP145 ARG146 VAL147 LEU148 GLY149 GLY150 ALA151 VAL152 LEU153 ASP154 LEU155 TRP156 VAL157 SER158 ASP159 SER160 GLY161 ALA162 PHE163 LEU164 LEU165 GLU166 VAL167 ASP168 PRO169 ALA170 TYR171 ARG172 ILE173 LEU174 CYS175 GLU176 MET177 SER178 LEU179 GLU180 ALA181 TRP182 LEU183 ALA184 GLN185 GLY186 HIS187 PRO188 LEU189 PRO190 LYS191 ARG192 VAL193 ARG194 ASN195 ALA196 TYR197 ASP198 ARG199 ARG200 THR201 TRP202 GLU203 LEU204 LEU205 ARG206 LEU207 GLY208 GLU209 GLU210 ASP211 PRO212 LYS213 GLU214 LEU215 PRO216 GLY219 GLY220 LEU221 SER222 LEU223 LEU224 ASP225 TYR226 HIS227 ALA228 SER229 LYS230 GLY231 ARG232 LEU233 GLN234 GLY235 ARG236 GLU237 GLY238 GLY239 ARG240 VAL241 ALA242 TRP243 VAL244 ALA245 ASP246 PRO247 LYS252 PRO253 ILE254 PRO255 HIS256 LEU257 THR258 GLY259 LEU260 LEU261 VAL262 PRO263 VAL264 LEU265 THR266 LEU267 GLU268 ASP269 LEU270 HIS271 GLU272 GLU273 GLU274 LEU277 ALA278 LEU279 SER280 LEU281 PRO282 TRP283 GLU284 GLU285 ARG286 ARG287 ARG288 ARG289 THR290 ARG291 GLU292 ILE293 ALA294 SER295 TRP296 ILE297 GLY298 ARG299 ARG300 LEU301 GLY302 LEU303 GLY304 THR305 PRO306 GLU307 ALA308 VAL309 ARG310 ALA311 GLN312 ALA313 TYR314 ARG315 LEU316 SER317 ILE318 PRO319 LYS320 LEU321 MET322 GLY323 ARG324 ARG325 ALA326 VAL327 SER328 LYS329 PRO330 ALA331 ASP332 ALA333 LEU334 ARG335 VAL336 GLY337 PHE338 TYR339 ARG340 ALA341 GLN342 GLU343 THR344 ALA345 LEU346 ALA347 LEU348 LEU349 ARG350 LEU351 ASP352 GLY353 ALA354 GLN355 GLY356 TRP357 PRO358 GLU359 PHE360 LEU361 ARG362 ARG363 ALA364 LEU365 LEU366 ARG367 ALA368 PHE369 GLY370 ALA371 SER372 GLY373 ALA374 SER375 LEU376 ARG377 LEU378 HIS379 THR380 LEU381 HIS382 ALA383 HIS384 PRO385 SER386 GLN387 GLY388 LEU389 ALA390 PHE391 ARG392 GLU393 ALA394 LEU395 ARG396 LYS397 ALA398 LYS399 GLU400 GLU401 GLY402 VAL403 GLN404 ALA405 VAL406 LEU407 VAL408 LEU409 THR410 PRO411 PRO412 MET413 ALA414 TRP415 GLU416 ASP417 ARG418 ASN419 ARG420 LEU421 LYS422 ALA423 LEU424 LEU425 LEU426 ARG427 GLU428 GLY429 LEU430 PRO431 SER432 GLN433 ILE434 LEU435 ASN436 VAL437 PRO438 LEU439 ARG440 GLU441 GLU442 GLU443 ARG444 HIS445 ARG446 TRP447 GLU448 ASN449 ALA450 LEU451 LEU452 GLY453 LEU454 LEU455 ALA456 LYS457 ALA458 GLY459 LEU460 GLN461 VAL462 VAL463 ALA464 LEU465 SER466 GLY467 ALA468 TYR469 PRO470 ALA471 GLU472 LEU473 ALA474 VAL475 GLY476 PHE477 ASP478 ALA479 GLY480 GLY481 ARG482 GLU483 SER484 PHE485 ARG486 PHE487 GLY488 GLY489 ALA490 ALA491 CYS492 ALA493 VAL494 GLY495 GLY496 ASP497 GLY498 GLY499 HIS500 LEU501 LEU502 TRP503 THR504 LEU505 PRO506 GLU507 ALA508 GLN509 ALA510 GLY511 GLU512 ARG513 ILE514 PRO515 GLN516 GLU517 VAL518 VAL519 TRP520 ASP521 LEU522 LEU523 GLU524 GLU525 THR526 LEU527 TRP528 ALA529 PHE530 ARG531 ARG532 LYS533 ALA534 GLY535 ARG536 LEU537 PRO538 SER539 ARG540 VAL541 LEU542 LEU543 LEU544 ARG545 ASP546 GLY547 ARG548 VAL549 PRO550 GLN551 ASP552 GLU553 PHE554 ALA555 LEU556 ALA557 LEU558 GLU559 ALA560 LEU561 ALA562 ARG563 GLU564 GLY565 ILE566 ALA567 TYR568 ASP569 LEU570 VAL571 SER572 VAL573 ARG574 LYS575 SER576 GLY577 GLY578 GLY579 ARG580 VAL581 TYR582 PRO583 VAL584 GLN585 GLY586 ARG587 LEU588 ALA589 ASP590 GLY591 LEU592 TYR593 VAL594 PRO595 LEU596 GLU597 ASP598 LYS599 THR600 PHE601 LEU602 LEU603 LEU604 THR605 VAL606 HIS607 ARG608 ASP609 PHE610 ARG611 GLY612 THR613 PRO614 ARG615 PRO616 LEU617 LYS618 LEU619 VAL620 HIS621 GLU622 ALA623 GLY624 ASP625 THR626 PRO627 LEU628 GLU629 ALA630 LEU631 ALA632 HIS633 GLN634 ILE635 PHE636 HIS637 LEU638 THR639 ARG640 LEU641 TYR642 PRO643 ALA644 SER645 GLY646 PHE647 ALA648 PHE649 PRO650 ARG651 LEU652 PRO653 ALA654 PRO655 LEU656 HIS657 LEU658 ALA659 ASP660 ARG661 LEU662 VAL663 LYS664 GLU665 VAL666 GLY667 ARG668 LEU669 GLY670 ILE671 ARG672 HIS673 LEU674 LYS675 GLU676 VAL677 ASP678 ARG679 GLU680 LYS681 LEU682 PHE683 PHE684 VAL685 |
| Unit 3 | DT1 DG2 DA3 DG4 DG5 DT6 DA7 DG8 DT9 DA10 DG11 DG12 DT13 DT14 DG15 DT16 |
| Unit 4 | DT10 DA11 DC12 DT13 DA14 DC15 DC16 DT17 DC18 DG19 |
| Unit 5 | DT1 DG2 DA3 DG4 DG5 DT6 DA7 DG8 DT9 DA10 DG11 DG12 DT13 DT14 DG15 DT16 |
| Unit 6 | DT10 DA11 DC12 DT13 DA14 DC15 DC16 DT17 DC18 DG19 |
| Unit 7 | DA4 DC5 DA6 DA7 DC8 DC9 |
| Unit 8 | DA4 DC5 DA6 DA7 DC8 DC9 |
| Unit 9 | DT701 MN702 MN703 |
| Unit 10 | DT701 MN702 MN703 |
| Unit 11 | MN101 |
| Unit 12 | MN101 |
| Perl script: | PDBscan.pl (15 Sep 2016) |
| Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |