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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE AND RECEPTOR BINDING SPECIFICITY OF THE HEMAGGLUTI FROM AVIAN INFLUENZA A VIRUS H13N6
Keywords RECEPTOR BINDING, VIRAL PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4KPQ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HEMAGGLUTININ  A 324 2555 0
2  Protein   HEMAGGLUTININ  B 165 1312 0
3  Protein   HEMAGGLUTININ  C 324 2555 0
4  Protein   HEMAGGLUTININ  D 165 1312 0
5  Protein   HEMAGGLUTININ  E 324 2555 0
6  Protein   HEMAGGLUTININ  F 165 1312 0
7  Ligand   HEMAGGLUTININ  E 1 0 14
8 Water     226 0 226
total       1694 11601 240
Proteins
Unit 1 ILE4 GLN5 ASP6 ARG7 ILE8 CYS9 VAL10 GLY11 TYR12 LEU13 SER14 THR15 ASN16 SER17 SER18 GLU19 ARG20 VAL21 ASP22 THR23 LEU24 LEU25 GLU26 ASN27 GLY28 VAL29 PRO30 VAL31 THR32 SER33 SER34 ILE35 ASP36 LEU37 ILE38 GLU39 THR40 ASN41 HIS42 THR43 GLY44 THR45 TYR46 CYS47 SER48 LEU49 ASN50 GLY51 VAL52 SER53 PRO54 VAL55 HIS56 LEU57 GLY58 ASP59 CYS60 SER61 PHE62 GLU63 GLY64 TRP65 ILE66 VAL67 GLY68 ASN69 PRO70 ALA71 CYS72 THR73 SER74 ASN75 PHE76 GLY77 ILE78 ARG79 GLU80 TRP81 SER82 TYR83 LEU84 ILE85 GLU86 ASP87 PRO88 ALA89 ALA90 PRO91 HIS92 GLY93 LEU94 CYS95 TYR96 PRO97 GLY98 GLU99 LEU100 ASN101 ASN102 ASN103 GLY104 GLU105 LEU106 ARG107 HIS108 LEU109 PHE110 SER111 GLY112 ILE113 ARG114 SER115 PHE116 SER117 ARG118 THR119 GLU120 LEU121 ILE122 PRO123 PRO124 THR125 SER126 TRP127 GLY128 GLU129 VAL130 LEU131 ASP132 GLY133 THR134 THR135 SER136 ALA137 CYS138 ARG139 ASP140 ASN141 THR142 GLY143 THR144 ASN145 SER146 PHE147 TYR148 ARG149 ASN150 LEU151 VAL152 TRP153 PHE154 ILE155 LYS156 LYS157 ASN158 ASN159 ARG160 TYR161 PRO162 VAL163 ILE164 SER165 LYS166 THR167 TYR168 ASN169 ASN170 THR171 THR172 GLY173 ARG174 ASP175 VAL176 LEU177 VAL178 LEU179 TRP180 GLY181 ILE182 HIS183 HIS184 PRO185 VAL186 SER187 VAL188 ASP189 GLU190 THR191 LYS192 THR193 LEU194 TYR195 VAL196 ASN197 SER198 ASP199 PRO200 TYR201 THR202 LEU203 VAL204 SER205 THR206 LYS207 SER208 TRP209 SER210 GLU211 LYS212 TYR213 LYS214 LEU215 GLU216 THR217 GLY218 VAL219 ARG220 PRO221 GLY222 TYR223 ASN224 GLY225 GLN226 ARG227 SER228 TRP229 MET230 LYS231 ILE232 TYR233 TRP234 SER235 LEU236 ILE237 HIS238 PRO239 GLY240 GLU241 MET242 ILE243 THR244 PHE245 GLU246 SER247 ASN248 GLY249 GLY250 PHE251 LEU252 ALA253 PRO254 ARG255 TYR256 GLY257 TYR258 ILE259 ILE260 GLU261 GLU262 TYR263 GLY264 LYS265 GLY266 ARG267 ILE268 PHE269 GLN270 SER271 ARG272 ILE273 ARG274 MET275 SER276 ARG277 CYS278 ASN279 THR280 LYS281 CYS282 GLN283 THR284 SER285 VAL286 GLY287 GLY288 ILE289 ASN290 THR291 ASN292 ARG293 THR294 PHE295 GLN296 ASN297 ILE298 ASP299 LYS300 ASN301 ALA302 LEU303 GLY304 ASP305 CYS306 PRO307 LYS308 TYR309 ILE310 LYS311 SER312 GLY313 GLN314 LEU315 LYS316 LEU317 ALA318 THR319 GLY320 LEU321 ARG322 ASN323 VAL324 PRO325 ALA326 ILE327
Unit 2 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 ILE10 GLU11 GLY12 GLY13 TRP14 PRO15 GLY16 LEU17 ILE18 ASN19 GLY20 TRP21 TYR22 GLY23 PHE24 GLN25 HIS26 GLN27 ASN28 GLU29 GLN30 GLY31 THR32 GLY33 ILE34 ALA35 ALA36 ASP37 LYS38 GLU39 SER40 THR41 GLN42 LYS43 ALA44 ILE45 ASP46 GLN47 ILE48 THR49 THR50 LYS51 ILE52 ASN53 ASN54 ILE55 ILE56 ASP57 LYS58 MET59 ASN60 GLY61 ASN62 TYR63 ASP64 SER65 ILE66 ARG67 GLY68 GLU69 PHE70 ASN71 GLN72 VAL73 GLU74 LYS75 ARG76 ILE77 ASN78 MET79 LEU80 ALA81 ASP82 ARG83 ILE84 ASP85 ASP86 ALA87 VAL88 THR89 ASP90 ILE91 TRP92 SER93 TYR94 ASN95 ALA96 LYS97 LEU98 LEU99 VAL100 LEU101 LEU102 GLU103 ASN104 ASP105 LYS106 THR107 LEU108 ASP109 MET110 HIS111 ASP112 ALA113 ASN114 VAL115 LYS116 ASN117 LEU118 HIS119 GLU120 GLN121 VAL122 ARG123 ARG124 GLU125 LEU126 LYS127 ASP128 ASN129 ALA130 ILE131 ASP132 GLU133 GLY134 ASN135 GLY136 CYS137 PHE138 GLU139 LEU140 LEU141 HIS142 LYS143 CYS144 ASN145 ASP146 SER147 CYS148 MET149 GLU150 THR151 ILE152 ARG153 ASN154 GLY155 THR156 TYR157 ASP158 HIS159 THR160 GLU161 TYR162 ALA163 GLU164 GLU165 SER166
Unit 3 ILE4 GLN5 ASP6 ARG7 ILE8 CYS9 VAL10 GLY11 TYR12 LEU13 SER14 THR15 ASN16 SER17 SER18 GLU19 ARG20 VAL21 ASP22 THR23 LEU24 LEU25 GLU26 ASN27 GLY28 VAL29 PRO30 VAL31 THR32 SER33 SER34 ILE35 ASP36 LEU37 ILE38 GLU39 THR40 ASN41 HIS42 THR43 GLY44 THR45 TYR46 CYS47 SER48 LEU49 ASN50 GLY51 VAL52 SER53 PRO54 VAL55 HIS56 LEU57 GLY58 ASP59 CYS60 SER61 PHE62 GLU63 GLY64 TRP65 ILE66 VAL67 GLY68 ASN69 PRO70 ALA71 CYS72 THR73 SER74 ASN75 PHE76 GLY77 ILE78 ARG79 GLU80 TRP81 SER82 TYR83 LEU84 ILE85 GLU86 ASP87 PRO88 ALA89 ALA90 PRO91 HIS92 GLY93 LEU94 CYS95 TYR96 PRO97 GLY98 GLU99 LEU100 ASN101 ASN102 ASN103 GLY104 GLU105 LEU106 ARG107 HIS108 LEU109 PHE110 SER111 GLY112 ILE113 ARG114 SER115 PHE116 SER117 ARG118 THR119 GLU120 LEU121 ILE122 PRO123 PRO124 THR125 SER126 TRP127 GLY128 GLU129 VAL130 LEU131 ASP132 GLY133 THR134 THR135 SER136 ALA137 CYS138 ARG139 ASP140 ASN141 THR142 GLY143 THR144 ASN145 SER146 PHE147 TYR148 ARG149 ASN150 LEU151 VAL152 TRP153 PHE154 ILE155 LYS156 LYS157 ASN158 ASN159 ARG160 TYR161 PRO162 VAL163 ILE164 SER165 LYS166 THR167 TYR168 ASN169 ASN170 THR171 THR172 GLY173 ARG174 ASP175 VAL176 LEU177 VAL178 LEU179 TRP180 GLY181 ILE182 HIS183 HIS184 PRO185 VAL186 SER187 VAL188 ASP189 GLU190 THR191 LYS192 THR193 LEU194 TYR195 VAL196 ASN197 SER198 ASP199 PRO200 TYR201 THR202 LEU203 VAL204 SER205 THR206 LYS207 SER208 TRP209 SER210 GLU211 LYS212 TYR213 LYS214 LEU215 GLU216 THR217 GLY218 VAL219 ARG220 PRO221 GLY222 TYR223 ASN224 GLY225 GLN226 ARG227 SER228 TRP229 MET230 LYS231 ILE232 TYR233 TRP234 SER235 LEU236 ILE237 HIS238 PRO239 GLY240 GLU241 MET242 ILE243 THR244 PHE245 GLU246 SER247 ASN248 GLY249 GLY250 PHE251 LEU252 ALA253 PRO254 ARG255 TYR256 GLY257 TYR258 ILE259 ILE260 GLU261 GLU262 TYR263 GLY264 LYS265 GLY266 ARG267 ILE268 PHE269 GLN270 SER271 ARG272 ILE273 ARG274 MET275 SER276 ARG277 CYS278 ASN279 THR280 LYS281 CYS282 GLN283 THR284 SER285 VAL286 GLY287 GLY288 ILE289 ASN290 THR291 ASN292 ARG293 THR294 PHE295 GLN296 ASN297 ILE298 ASP299 LYS300 ASN301 ALA302 LEU303 GLY304 ASP305 CYS306 PRO307 LYS308 TYR309 ILE310 LYS311 SER312 GLY313 GLN314 LEU315 LYS316 LEU317 ALA318 THR319 GLY320 LEU321 ARG322 ASN323 VAL324 PRO325 ALA326 ILE327
Unit 4 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 ILE10 GLU11 GLY12 GLY13 TRP14 PRO15 GLY16 LEU17 ILE18 ASN19 GLY20 TRP21 TYR22 GLY23 PHE24 GLN25 HIS26 GLN27 ASN28 GLU29 GLN30 GLY31 THR32 GLY33 ILE34 ALA35 ALA36 ASP37 LYS38 GLU39 SER40 THR41 GLN42 LYS43 ALA44 ILE45 ASP46 GLN47 ILE48 THR49 THR50 LYS51 ILE52 ASN53 ASN54 ILE55 ILE56 ASP57 LYS58 MET59 ASN60 GLY61 ASN62 TYR63 ASP64 SER65 ILE66 ARG67 GLY68 GLU69 PHE70 ASN71 GLN72 VAL73 GLU74 LYS75 ARG76 ILE77 ASN78 MET79 LEU80 ALA81 ASP82 ARG83 ILE84 ASP85 ASP86 ALA87 VAL88 THR89 ASP90 ILE91 TRP92 SER93 TYR94 ASN95 ALA96 LYS97 LEU98 LEU99 VAL100 LEU101 LEU102 GLU103 ASN104 ASP105 LYS106 THR107 LEU108 ASP109 MET110 HIS111 ASP112 ALA113 ASN114 VAL115 LYS116 ASN117 LEU118 HIS119 GLU120 GLN121 VAL122 ARG123 ARG124 GLU125 LEU126 LYS127 ASP128 ASN129 ALA130 ILE131 ASP132 GLU133 GLY134 ASN135 GLY136 CYS137 PHE138 GLU139 LEU140 LEU141 HIS142 LYS143 CYS144 ASN145 ASP146 SER147 CYS148 MET149 GLU150 THR151 ILE152 ARG153 ASN154 GLY155 THR156 TYR157 ASP158 HIS159 THR160 GLU161 TYR162 ALA163 GLU164 GLU165 SER166
Unit 5 ILE4 GLN5 ASP6 ARG7 ILE8 CYS9 VAL10 GLY11 TYR12 LEU13 SER14 THR15 ASN16 SER17 SER18 GLU19 ARG20 VAL21 ASP22 THR23 LEU24 LEU25 GLU26 ASN27 GLY28 VAL29 PRO30 VAL31 THR32 SER33 SER34 ILE35 ASP36 LEU37 ILE38 GLU39 THR40 ASN41 HIS42 THR43 GLY44 THR45 TYR46 CYS47 SER48 LEU49 ASN50 GLY51 VAL52 SER53 PRO54 VAL55 HIS56 LEU57 GLY58 ASP59 CYS60 SER61 PHE62 GLU63 GLY64 TRP65 ILE66 VAL67 GLY68 ASN69 PRO70 ALA71 CYS72 THR73 SER74 ASN75 PHE76 GLY77 ILE78 ARG79 GLU80 TRP81 SER82 TYR83 LEU84 ILE85 GLU86 ASP87 PRO88 ALA89 ALA90 PRO91 HIS92 GLY93 LEU94 CYS95 TYR96 PRO97 GLY98 GLU99 LEU100 ASN101 ASN102 ASN103 GLY104 GLU105 LEU106 ARG107 HIS108 LEU109 PHE110 SER111 GLY112 ILE113 ARG114 SER115 PHE116 SER117 ARG118 THR119 GLU120 LEU121 ILE122 PRO123 PRO124 THR125 SER126 TRP127 GLY128 GLU129 VAL130 LEU131 ASP132 GLY133 THR134 THR135 SER136 ALA137 CYS138 ARG139 ASP140 ASN141 THR142 GLY143 THR144 ASN145 SER146 PHE147 TYR148 ARG149 ASN150 LEU151 VAL152 TRP153 PHE154 ILE155 LYS156 LYS157 ASN158 ASN159 ARG160 TYR161 PRO162 VAL163 ILE164 SER165 LYS166 THR167 TYR168 ASN169 ASN170 THR171 THR172 GLY173 ARG174 ASP175 VAL176 LEU177 VAL178 LEU179 TRP180 GLY181 ILE182 HIS183 HIS184 PRO185 VAL186 SER187 VAL188 ASP189 GLU190 THR191 LYS192 THR193 LEU194 TYR195 VAL196 ASN197 SER198 ASP199 PRO200 TYR201 THR202 LEU203 VAL204 SER205 THR206 LYS207 SER208 TRP209 SER210 GLU211 LYS212 TYR213 LYS214 LEU215 GLU216 THR217 GLY218 VAL219 ARG220 PRO221 GLY222 TYR223 ASN224 GLY225 GLN226 ARG227 SER228 TRP229 MET230 LYS231 ILE232 TYR233 TRP234 SER235 LEU236 ILE237 HIS238 PRO239 GLY240 GLU241 MET242 ILE243 THR244 PHE245 GLU246 SER247 ASN248 GLY249 GLY250 PHE251 LEU252 ALA253 PRO254 ARG255 TYR256 GLY257 TYR258 ILE259 ILE260 GLU261 GLU262 TYR263 GLY264 LYS265 GLY266 ARG267 ILE268 PHE269 GLN270 SER271 ARG272 ILE273 ARG274 MET275 SER276 ARG277 CYS278 ASN279 THR280 LYS281 CYS282 GLN283 THR284 SER285 VAL286 GLY287 GLY288 ILE289 ASN290 THR291 ASN292 ARG293 THR294 PHE295 GLN296 ASN297 ILE298 ASP299 LYS300 ASN301 ALA302 LEU303 GLY304 ASP305 CYS306 PRO307 LYS308 TYR309 ILE310 LYS311 SER312 GLY313 GLN314 LEU315 LYS316 LEU317 ALA318 THR319 GLY320 LEU321 ARG322 ASN323 VAL324 PRO325 ALA326 ILE327
Unit 6 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 ILE10 GLU11 GLY12 GLY13 TRP14 PRO15 GLY16 LEU17 ILE18 ASN19 GLY20 TRP21 TYR22 GLY23 PHE24 GLN25 HIS26 GLN27 ASN28 GLU29 GLN30 GLY31 THR32 GLY33 ILE34 ALA35 ALA36 ASP37 LYS38 GLU39 SER40 THR41 GLN42 LYS43 ALA44 ILE45 ASP46 GLN47 ILE48 THR49 THR50 LYS51 ILE52 ASN53 ASN54 ILE55 ILE56 ASP57 LYS58 MET59 ASN60 GLY61 ASN62 TYR63 ASP64 SER65 ILE66 ARG67 GLY68 GLU69 PHE70 ASN71 GLN72 VAL73 GLU74 LYS75 ARG76 ILE77 ASN78 MET79 LEU80 ALA81 ASP82 ARG83 ILE84 ASP85 ASP86 ALA87 VAL88 THR89 ASP90 ILE91 TRP92 SER93 TYR94 ASN95 ALA96 LYS97 LEU98 LEU99 VAL100 LEU101 LEU102 GLU103 ASN104 ASP105 LYS106 THR107 LEU108 ASP109 MET110 HIS111 ASP112 ALA113 ASN114 VAL115 LYS116 ASN117 LEU118 HIS119 GLU120 GLN121 VAL122 ARG123 ARG124 GLU125 LEU126 LYS127 ASP128 ASN129 ALA130 ILE131 ASP132 GLU133 GLY134 ASN135 GLY136 CYS137 PHE138 GLU139 LEU140 LEU141 HIS142 LYS143 CYS144 ASN145 ASP146 SER147 CYS148 MET149 GLU150 THR151 ILE152 ARG153 ASN154 GLY155 THR156 TYR157 ASP158 HIS159 THR160 GLU161 TYR162 ALA163 GLU164 GLU165 SER166
Ligands
Unit 7 NAG601
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany