4KPE - Sequence, Chains, Asymmetric and Biological Units

• Title: NOVEL FLUOROQUINOLONES IN COMPLEX WITH TOPOISOMERASE IV FROM PNEUMONIAE AND E-SITE G-GATE
• Keywords: PROTEIN-DNA CLEAVAGE COMPLEX, ISOMERASE-DNA-INHIBITOR COMPLE TOPOISOMERASE IIA, QUINOLONE, ACHN-245
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4KPE	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	DNA TOPOISOMERASE 4 SUBUNIT A	A	482	3730	0
2	Protein	DNA TOPOISOMERASE 4 SUBUNIT A	B	482	3705	0
3	Protein	DNA TOPOISOMERASE 4 SUBUNIT B	C	208	1479	0
4	Protein	DNA TOPOISOMERASE 4 SUBUNIT B	D	210	1474	0
5	Other macromolecule	E-SITE DNA1	E	7	140	0
6	Other macromolecule	E-SITE DNA2	F	11	225	0
7	Other macromolecule	E-SITE DNA3	G	7	139	0
8	Other macromolecule	E-SITE DNA4	H	11	226	0
9	Ligand	DNA TOPOISOMERASE 4 SUBUNIT A	A	2	0	2
10	Ligand	DNA TOPOISOMERASE 4 SUBUNIT A	B	2	0	2
11	Ligand	DNA TOPOISOMERASE 4 SUBUNIT B	C	1	0	1
12	Ligand	DNA TOPOISOMERASE 4 SUBUNIT B	D	1	0	1
13	Ligand	E-SITE DNA2	F	1	0	46
14	Ligand	E-SITE DNA4	H	1	0	46
15	Water			23	0	24
total				1449	11118	122

Proteins

Unit 1	ASN 3 ILE 4 GLN 5 ASN 6 MET 7 SER 8 LEU 9 GLU 10 ASP 11 ILE 12 MET 13 GLY 14 GLU 15 ARG 16 PHE 17 GLY 18 ARG 19 TYR 20 SER 21 LYS 22 TYR 23 ILE 24 ILE 25 GLN 26 ASP 27 ARG 28 ALA 29 LEU 30 PRO 31 ASP 32 ILE 33 ARG 34 ASP 35 GLY 36 LEU 37 LYS 38 PRO 39 VAL 40 GLN 41 ARG 42 ARG 43 ILE 44 LEU 45 TYR 46 SER 47 MET 48 ASN 49 LYS 50 ASP 51 SER 52 ASN 53 THR 54 PHE 55 ASP 56 LYS 57 SER 58 TYR 59 ARG 60 LYS 61 SER 62 ALA 63 LYS 64 SER 65 VAL 66 GLY 67 ASN 68 ILE 69 MET 70 GLY 71 ASN 72 PHE 73 HIS 74 PRO 75 HIS 76 GLY 77 ASP 78 SER 79 SER 80 ILE 81 TYR 82 ASP 83 ALA 84 MET 85 VAL 86 ARG 87 MET 88 SER 89 GLN 90 ASN 91 TRP 92 LYS 93 ASN 94 ARG 95 GLU 96 ILE 97 LEU 98 VAL 99 GLU 100 MET 101 HIS 102 GLY 103 ASN 104 ASN 105 GLY 106 SER 107 MET 108 ASP 109 GLY 110 ASP 111 PRO 112 PRO 113 ALA 114 ALA 115 MET 116 ARG 117 TYR 118 THR 119 GLU 120 ALA 121 ARG 122 LEU 123 SER 124 GLU 125 ILE 126 ALA 127 GLY 128 TYR 129 LEU 130 LEU 131 GLN 132 ASP 133 ILE 134 GLU 135 LYS 136 LYS 137 THR 138 VAL 139 PRO 140 PHE 141 ALA 142 TRP 143 ASN 144 PHE 145 ASP 146 ASP 147 THR 148 GLU 149 LYS 150 GLU 151 PRO 152 THR 153 VAL 154 LEU 155 PRO 156 ALA 157 ALA 158 PHE 159 PRO 160 ASN 161 LEU 162 LEU 163 VAL 164 ASN 165 GLY 166 SER 167 THR 168 GLY 169 ILE 170 SER 171 ALA 172 GLY 173 TYR 174 ALA 175 THR 176 ASP 177 ILE 178 PRO 179 PRO 180 HIS 181 ASN 182 LEU 183 ALA 184 GLU 185 VAL 186 ILE 187 ASP 188 ALA 189 ALA 190 VAL 191 TYR 192 MET 193 ILE 194 ASP 195 HIS 196 PRO 197 THR 198 ALA 199 LYS 200 ILE 201 ASP 202 LYS 203 LEU 204 MET 205 GLU 206 PHE 207 LEU 208 PRO 209 GLY 210 PRO 211 ASP 212 PHE 213 PRO 214 THR 215 GLY 216 ALA 217 ILE 218 ILE 219 GLN 220 GLY 221 ARG 222 ASP 223 GLU 224 ILE 225 LYS 226 LYS 227 ALA 228 TYR 229 GLU 230 THR 231 GLY 232 LYS 233 GLY 234 ARG 235 VAL 236 VAL 237 VAL 238 ARG 239 SER 240 LYS 241 THR 242 GLU 243 ILE 244 GLU 245 LYS 246 LEU 247 LYS 248 GLY 249 GLY 250 LYS 251 GLU 252 GLN 253 ILE 254 VAL 255 ILE 256 THR 257 GLU 258 ILE 259 PRO 260 TYR 261 GLU 262 ILE 263 ASN 264 LYS 265 ALA 266 ASN 267 LEU 268 VAL 269 LYS 270 LYS 271 ILE 272 ASP 273 ASP 274 VAL 275 ARG 276 VAL 277 ASN 278 ASN 279 LYS 280 VAL 281 ALA 282 GLY 283 ILE 284 ALA 285 GLU 286 VAL 287 ARG 288 ASP 289 GLU 290 SER 291 ASP 292 ARG 293 ASP 294 GLY 295 LEU 296 ARG 297 ILE 298 ALA 299 ILE 300 GLU 301 LEU 302 LYS 303 LYS 304 ASP 305 ALA 306 ASN 307 THR 308 GLU 309 LEU 310 VAL 311 LEU 312 ASN 313 TYR 314 LEU 315 PHE 316 LYS 317 TYR 318 THR 319 ASP 320 LEU 321 GLN 322 ILE 323 ASN 324 TYR 325 ASN 326 PHE 327 ASN 328 MET 329 VAL 330 ALA 331 ILE 332 ASP 333 ASN 334 PHE 335 THR 336 PRO 337 ARG 338 GLN 339 VAL 340 GLY 341 ILE 342 VAL 343 PRO 344 ILE 345 LEU 346 SER 347 SER 348 TYR 349 ILE 350 ALA 351 HIS 352 ARG 353 ARG 354 GLU 355 VAL 356 ILE 357 LEU 358 ALA 359 ARG 360 SER 361 ARG 362 PHE 363 ASP 364 LYS 365 GLU 366 LYS 367 ALA 368 GLU 369 LYS 370 ARG 371 LEU 372 HIS 373 ILE 374 VAL 375 GLU 376 GLY 377 LEU 378 ILE 379 ARG 380 VAL 381 ILE 382 SER 383 ILE 384 LEU 385 ASP 386 GLU 387 VAL 388 ILE 389 ALA 390 LEU 391 ILE 392 ARG 393 ALA 394 SER 395 GLU 396 ASN 397 LYS 398 ALA 399 ASP 400 ALA 401 LYS 402 GLU 403 ASN 404 LEU 405 LYS 406 VAL 407 SER 408 TYR 409 ASP 410 PHE 411 THR 412 GLU 413 GLU 414 GLN 415 ALA 416 GLU 417 ALA 418 ILE 419 VAL 420 THR 421 LEU 422 GLN 423 LEU 424 TYR 425 ARG 426 LEU 427 THR 428 ASN 429 THR 430 ASP 431 VAL 432 VAL 433 VAL 434 LEU 435 GLN 436 GLU 437 GLU 438 GLU 439 ALA 440 GLU 441 LEU 442 ARG 443 GLU 444 LYS 445 ILE 446 ALA 447 MET 448 LEU 449 ALA 450 ALA 451 ILE 452 ILE 453 GLY 454 ASP 455 GLU 456 ARG 457 THR 458 MET 459 TYR 460 ASN 461 LEU 462 MET 463 LYS 464 LYS 465 GLU 466 LEU 467 ARG 468 GLU 469 VAL 470 LYS 471 LYS 472 LYS 473 PHE 474 ALA 475 THR 476 PRO 477 ARG 478 LEU 479 SER 480 SER 481 LEU 482 GLU 483 ASP 484
Unit 2	ASN 3 ILE 4 GLN 5 ASN 6 MET 7 SER 8 LEU 9 GLU 10 ASP 11 ILE 12 MET 13 GLY 14 GLU 15 ARG 16 PHE 17 GLY 18 ARG 19 TYR 20 SER 21 LYS 22 TYR 23 ILE 24 ILE 25 GLN 26 ASP 27 ARG 28 ALA 29 LEU 30 PRO 31 ASP 32 ILE 33 ARG 34 ASP 35 GLY 36 LEU 37 LYS 38 PRO 39 VAL 40 GLN 41 ARG 42 ARG 43 ILE 44 LEU 45 TYR 46 SER 47 MET 48 ASN 49 LYS 50 ASP 51 SER 52 ASN 53 THR 54 PHE 55 ASP 56 LYS 57 SER 58 TYR 59 ARG 60 LYS 61 SER 62 ALA 63 LYS 64 SER 65 VAL 66 GLY 67 ASN 68 ILE 69 MET 70 GLY 71 ASN 72 PHE 73 HIS 74 PRO 75 HIS 76 GLY 77 ASP 78 SER 79 SER 80 ILE 81 TYR 82 ASP 83 ALA 84 MET 85 VAL 86 ARG 87 MET 88 SER 89 GLN 90 ASN 91 TRP 92 LYS 93 ASN 94 ARG 95 GLU 96 ILE 97 LEU 98 VAL 99 GLU 100 MET 101 HIS 102 GLY 103 ASN 104 ASN 105 GLY 106 SER 107 MET 108 ASP 109 GLY 110 ASP 111 PRO 112 PRO 113 ALA 114 ALA 115 MET 116 ARG 117 TYR 118 THR 119 GLU 120 ALA 121 ARG 122 LEU 123 SER 124 GLU 125 ILE 126 ALA 127 GLY 128 TYR 129 LEU 130 LEU 131 GLN 132 ASP 133 ILE 134 GLU 135 LYS 136 LYS 137 THR 138 VAL 139 PRO 140 PHE 141 ALA 142 TRP 143 ASN 144 PHE 145 ASP 146 ASP 147 THR 148 GLU 149 LYS 150 GLU 151 PRO 152 THR 153 VAL 154 LEU 155 PRO 156 ALA 157 ALA 158 PHE 159 PRO 160 ASN 161 LEU 162 LEU 163 VAL 164 ASN 165 GLY 166 SER 167 THR 168 GLY 169 ILE 170 SER 171 ALA 172 GLY 173 TYR 174 ALA 175 THR 176 ASP 177 ILE 178 PRO 179 PRO 180 HIS 181 ASN 182 LEU 183 ALA 184 GLU 185 VAL 186 ILE 187 ASP 188 ALA 189 ALA 190 VAL 191 TYR 192 MET 193 ILE 194 ASP 195 HIS 196 PRO 197 THR 198 ALA 199 LYS 200 ILE 201 ASP 202 LYS 203 LEU 204 MET 205 GLU 206 PHE 207 LEU 208 PRO 209 GLY 210 PRO 211 ASP 212 PHE 213 PRO 214 THR 215 GLY 216 ALA 217 ILE 218 ILE 219 GLN 220 GLY 221 ARG 222 ASP 223 GLU 224 ILE 225 LYS 226 LYS 227 ALA 228 TYR 229 GLU 230 THR 231 GLY 232 LYS 233 GLY 234 ARG 235 VAL 236 VAL 237 VAL 238 ARG 239 SER 240 LYS 241 THR 242 GLU 243 ILE 244 GLU 245 LYS 246 LEU 247 LYS 248 GLY 249 GLY 250 LYS 251 GLU 252 GLN 253 ILE 254 VAL 255 ILE 256 THR 257 GLU 258 ILE 259 PRO 260 TYR 261 GLU 262 ILE 263 ASN 264 LYS 265 ALA 266 ASN 267 LEU 268 VAL 269 LYS 270 LYS 271 ILE 272 ASP 273 ASP 274 VAL 275 ARG 276 VAL 277 ASN 278 ASN 279 LYS 280 VAL 281 ALA 282 GLY 283 ILE 284 ALA 285 GLU 286 VAL 287 ARG 288 ASP 289 GLU 290 SER 291 ASP 292 ARG 293 ASP 294 GLY 295 LEU 296 ARG 297 ILE 298 ALA 299 ILE 300 GLU 301 LEU 302 LYS 303 LYS 304 ASP 305 ALA 306 ASN 307 THR 308 GLU 309 LEU 310 VAL 311 LEU 312 ASN 313 TYR 314 LEU 315 PHE 316 LYS 317 TYR 318 THR 319 ASP 320 LEU 321 GLN 322 ILE 323 ASN 324 TYR 325 ASN 326 PHE 327 ASN 328 MET 329 VAL 330 ALA 331 ILE 332 ASP 333 ASN 334 PHE 335 THR 336 PRO 337 ARG 338 GLN 339 VAL 340 GLY 341 ILE 342 VAL 343 PRO 344 ILE 345 LEU 346 SER 347 SER 348 TYR 349 ILE 350 ALA 351 HIS 352 ARG 353 ARG 354 GLU 355 VAL 356 ILE 357 LEU 358 ALA 359 ARG 360 SER 361 ARG 362 PHE 363 ASP 364 LYS 365 GLU 366 LYS 367 ALA 368 GLU 369 LYS 370 ARG 371 LEU 372 HIS 373 ILE 374 VAL 375 GLU 376 GLY 377 LEU 378 ILE 379 ARG 380 VAL 381 ILE 382 SER 383 ILE 384 LEU 385 ASP 386 GLU 387 VAL 388 ILE 389 ALA 390 LEU 391 ILE 392 ARG 393 ALA 394 SER 395 GLU 396 ASN 397 LYS 398 ALA 399 ASP 400 ALA 401 LYS 402 GLU 403 ASN 404 LEU 405 LYS 406 VAL 407 SER 408 TYR 409 ASP 410 PHE 411 THR 412 GLU 413 GLU 414 GLN 415 ALA 416 GLU 417 ALA 418 ILE 419 VAL 420 THR 421 LEU 422 GLN 423 LEU 424 TYR 425 ARG 426 LEU 427 THR 428 ASN 429 THR 430 ASP 431 VAL 432 VAL 433 VAL 434 LEU 435 GLN 436 GLU 437 GLU 438 GLU 439 ALA 440 GLU 441 LEU 442 ARG 443 GLU 444 LYS 445 ILE 446 ALA 447 MET 448 LEU 449 ALA 450 ALA 451 ILE 452 ILE 453 GLY 454 ASP 455 GLU 456 ARG 457 THR 458 MET 459 TYR 460 ASN 461 LEU 462 MET 463 LYS 464 LYS 465 GLU 466 LEU 467 ARG 468 GLU 469 VAL 470 LYS 471 LYS 472 LYS 473 PHE 474 ALA 475 THR 476 PRO 477 ARG 478 LEU 479 SER 480 SER 481 LEU 482 GLU 483 ASP 484
Unit 3	LYS 415 LEU 416 THR 417 PRO 418 ALA 419 GLN 420 SER 421 LYS 422 ASN 423 PRO 424 ALA 425 LYS 426 ASN 427 GLU 428 LEU 429 TYR 430 LEU 431 VAL 432 GLU 433 GLY 434 ASP 435 SER 436 ALA 437 GLY 438 GLY 439 SER 440 ALA 441 LYS 442 GLN 443 GLY 444 ARG 445 ASP 446 ARG 447 LYS 448 PHE 449 GLN 450 ALA 451 ILE 452 LEU 453 PRO 454 LEU 455 ARG 456 GLY 457 LYS 458 VAL 459 ILE 460 ASN 461 THR 462 ALA 463 LYS 464 ALA 465 LYS 466 MET 467 ALA 468 ASP 469 ILE 470 LEU 471 LYS 472 ASN 473 GLU 474 GLU 475 ILE 476 ASN 477 THR 478 MET 479 ILE 480 TYR 481 THR 482 ILE 483 GLY 484 ALA 485 GLY 486 VAL 487 GLY 488 ALA 489 ASP 490 PHE 491 SER 492 ILE 493 GLU 494 ASP 495 ALA 496 ASN 497 TYR 498 ASP 499 LYS 500 ILE 501 ILE 502 ILE 503 MET 504 THR 505 ASP 506 ALA 507 ASP 508 THR 509 ASP 510 GLY 511 ALA 512 HIS 513 ILE 514 GLN 515 THR 516 LEU 517 LEU 518 LEU 519 THR 520 PHE 521 PHE 522 TYR 523 ARG 524 TYR 525 MET 526 ARG 527 PRO 528 LEU 529 VAL 530 GLU 531 ALA 532 GLY 533 HIS 534 VAL 535 TYR 536 ILE 537 ALA 538 LEU 539 PRO 540 PRO 541 LEU 542 TYR 543 LYS 544 ALA 556 TYR 557 ALA 558 TRP 559 THR 560 ASP 561 GLY 562 GLU 563 LEU 564 GLU 565 GLU 566 LEU 567 ARG 568 LYS 569 LEU 577 GLN 578 ARG 579 TYR 580 LYS 581 GLY 582 LEU 583 GLY 584 GLU 585 MET 586 ASN 587 ALA 588 ASP 589 GLN 590 LEU 591 TRP 592 GLU 593 THR 594 THR 595 MET 596 ASN 597 PRO 598 GLU 599 THR 600 ARG 601 THR 602 LEU 603 ILE 604 ARG 605 VAL 606 THR 607 ILE 608 GLU 609 ASP 610 LEU 611 ALA 612 ARG 613 ALA 614 GLU 615 ARG 616 ARG 617 VAL 618 ASN 619 VAL 620 LEU 621 MET 622 GLY 623 ASP 624 LYS 625 VAL 626 GLU 627 PRO 628 ARG 629 ARG 630 LYS 631 TRP 632 ILE 633 GLU 634 ASP 635 ASN 636 VAL 637 LYS 638 PHE 639 THR 640
Unit 4	LYS 415 LEU 416 THR 417 PRO 418 ALA 419 GLN 420 SER 421 LYS 422 ASN 423 PRO 424 ALA 425 LYS 426 ASN 427 GLU 428 LEU 429 TYR 430 LEU 431 VAL 432 GLU 433 GLY 434 ASP 435 SER 436 ALA 437 GLY 438 GLY 439 SER 440 ALA 441 LYS 442 GLN 443 GLY 444 ARG 445 ASP 446 ARG 447 LYS 448 PHE 449 GLN 450 ALA 451 ILE 452 LEU 453 PRO 454 LEU 455 ARG 456 GLY 457 LYS 458 VAL 459 ILE 460 ASN 461 THR 462 ALA 463 LYS 464 ALA 465 LYS 466 MET 467 ALA 468 ASP 469 ILE 470 LEU 471 LYS 472 ASN 473 GLU 474 GLU 475 ILE 476 ASN 477 THR 478 MET 479 ILE 480 TYR 481 THR 482 ILE 483 GLY 484 ALA 485 GLY 486 VAL 487 GLY 488 ALA 489 ASP 490 PHE 491 SER 492 ILE 493 GLU 494 ASP 495 ALA 496 ASN 497 TYR 498 ASP 499 LYS 500 ILE 501 ILE 502 ILE 503 MET 504 THR 505 ASP 506 ALA 507 ASP 508 THR 509 ASP 510 GLY 511 ALA 512 HIS 513 ILE 514 GLN 515 THR 516 LEU 517 LEU 518 LEU 519 THR 520 PHE 521 PHE 522 TYR 523 ARG 524 TYR 525 MET 526 ARG 527 PRO 528 LEU 529 VAL 530 GLU 531 ALA 532 GLY 533 HIS 534 VAL 535 TYR 536 ILE 537 ALA 538 LEU 539 PRO 540 PRO 541 LEU 542 TYR 543 LYS 544 MET 545 ALA 556 TYR 557 ALA 558 TRP 559 THR 560 ASP 561 GLY 562 GLU 563 LEU 564 GLU 565 GLU 566 LEU 567 ARG 568 LYS 569 GLN 570 LEU 577 GLN 578 ARG 579 TYR 580 LYS 581 GLY 582 LEU 583 GLY 584 GLU 585 MET 586 ASN 587 ALA 588 ASP 589 GLN 590 LEU 591 TRP 592 GLU 593 THR 594 THR 595 MET 596 ASN 597 PRO 598 GLU 599 THR 600 ARG 601 THR 602 LEU 603 ILE 604 ARG 605 VAL 606 THR 607 ILE 608 GLU 609 ASP 610 LEU 611 ALA 612 ARG 613 ALA 614 GLU 615 ARG 616 ARG 617 VAL 618 ASN 619 VAL 620 LEU 621 MET 622 GLY 623 ASP 624 LYS 625 VAL 626 GLU 627 PRO 628 ARG 629 ARG 630 LYS 631 TRP 632 ILE 633 GLU 634 ASP 635 ASN 636 VAL 637 LYS 638 PHE 639 THR 640

Other macromolecules

Unit 5	DC 9 DA 10 DT 11 DG 12 DA 13 DA 14 DT 15
Unit 6	DA 1 DG 2 DT 3 DC 4 DA 5 DT 6 DT 7 DC 8 DA 9 DT 10 DG 11
Unit 7	DC 9 DG 10 DT 11 DG 12 DC 13 DA 14 DT 15
Unit 8	DG 1 DA 2 DC 3 DT 4 DA 5 DT 6 DG 7 DC 8 DA 9 DC 10 DG 11

Ligands

Unit 9	MG 501 MG 502
Unit 10	MG 501 MG 502
Unit 11	MG 701
Unit 12	MG 701
Unit 13	AF5 101
Unit 14	AF5 101