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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN LGR5-RSPO1-RNF43
Keywords LEUCINE-RICH REPEAT, CYSTEINE-RICH DOMAIN, FURIN-REPEAT, PRO ASSOCIATED DOMAIN, LIGAND RECOGNITION, PROTEIN-PROTEIN INTE N-LINKED GLYCOSYLATION, MEMBRANE PROTEIN, SIGNALING PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4KNG     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   LEUCINE-RICH REPEAT-CONTAINING G-PROTEIN COUPLED 5  A 461 3616 0
2  Protein   LEUCINE-RICH REPEAT-CONTAINING G-PROTEIN COUPLED 5  B 463 3629 0
3  Protein   R-SPONDIN-1  M 98 750 0
4  Protein   R-SPONDIN-1  P 94 720 0
5  Protein   E3 UBIQUITIN-PROTEIN LIGASE RNF43  E 149 1152 0
6  Protein   E3 UBIQUITIN-PROTEIN LIGASE RNF43  F 148 1145 0
7  Ligand   LEUCINE-RICH REPEAT-CONTAINING G-PROTEIN COUPLED 5  A 1 0 14
8  Ligand   LEUCINE-RICH REPEAT-CONTAINING G-PROTEIN COUPLED 5  B 2 0 15
9 Water     205 0 205
total       1621 11012 234
Proteins
Unit 1 GLY30 PRO31 ARG32 GLY33 CYS34 PRO35 THR36 HIS37 CYS38 HIS39 CYS40 GLU41 PRO42 ASP43 GLY44 ARG45 MET46 LEU47 LEU48 ARG49 VAL50 ASP51 CYS52 SER53 ASP54 LEU55 GLY56 LEU57 SER58 GLU59 LEU60 PRO61 SER62 ASN63 LEU64 SER65 VAL66 PHE67 THR68 SER69 TYR70 LEU71 ASP72 LEU73 SER74 MET75 ASN76 ASN77 ILE78 SER79 GLN80 LEU81 LEU82 PRO83 ASN84 PRO85 LEU86 PRO87 SER88 LEU89 ARG90 PHE91 LEU92 GLU93 GLU94 LEU95 ARG96 LEU97 ALA98 GLY99 ASN100 ALA101 LEU102 THR103 TYR104 ILE105 PRO106 LYS107 GLY108 ALA109 PHE110 THR111 GLY112 LEU113 TYR114 SER115 LEU116 LYS117 VAL118 LEU119 MET120 LEU121 GLN122 ASN123 ASN124 GLN125 LEU126 ARG127 HIS128 VAL129 PRO130 THR131 GLU132 ALA133 LEU134 GLN135 ASN136 LEU137 ARG138 SER139 LEU140 GLN141 SER142 LEU143 ARG144 LEU145 ASP146 ALA147 ASN148 HIS149 ILE150 SER151 TYR152 VAL153 PRO154 PRO155 SER156 CYS157 PHE158 SER159 GLY160 LEU161 HIS162 SER163 LEU164 ARG165 HIS166 LEU167 TRP168 LEU169 ASP170 ASP171 ASN172 ALA173 LEU174 THR175 GLU176 ILE177 PRO178 VAL179 GLN180 ALA181 PHE182 ARG183 SER184 LEU185 SER186 ALA187 LEU188 GLN189 ALA190 MET191 THR192 LEU193 ALA194 LEU195 ASN196 LYS197 ILE198 HIS199 HIS200 ILE201 PRO202 ASP203 TYR204 ALA205 PHE206 GLY207 ASN208 LEU209 SER210 SER211 LEU212 VAL213 VAL214 LEU215 HIS216 LEU217 HIS218 ASN219 ASN220 ARG221 ILE222 HIS223 SER224 LEU225 GLY226 LYS227 LYS228 CYS229 PHE230 ASP231 GLY232 LEU233 HIS234 SER235 LEU236 GLU237 THR238 LEU239 ASP240 LEU241 ASN242 TYR243 ASN244 ASN245 LEU246 ASP247 GLU248 PHE249 PRO250 THR251 ALA252 ILE253 ARG254 THR255 LEU256 SER257 ASN258 LEU259 LYS260 GLU261 LEU262 GLY263 PHE264 HIS265 SER266 ASN267 ASN268 ILE269 ARG270 SER271 ILE272 PRO273 GLU274 LYS275 ALA276 PHE277 VAL278 GLY279 ASN280 PRO281 SER282 LEU283 ILE284 THR285 ILE286 HIS287 PHE288 TYR289 ASP290 ASN291 PRO292 ILE293 GLN294 PHE295 VAL296 GLY297 ARG298 SER299 ALA300 PHE301 GLN302 HIS303 LEU304 PRO305 GLU306 LEU307 ARG308 THR309 LEU310 THR311 LEU312 ASN313 GLY314 ALA315 SER316 GLN317 ILE318 THR319 GLU320 PHE321 PRO322 ASP323 LEU324 THR325 GLY326 THR327 ALA328 ASN329 LEU330 GLU331 SER332 LEU333 THR334 LEU335 THR336 GLY337 ALA338 GLN339 ILE340 SER341 SER342 LEU343 PRO344 GLN345 THR346 VAL347 CYS348 ASN349 GLN350 LEU351 PRO352 ASN353 LEU354 GLN355 VAL356 LEU357 ASP358 LEU359 SER360 TYR361 ASN362 LEU363 LEU364 GLU365 ASP366 LEU367 PRO368 SER369 PHE370 SER371 VAL372 CYS373 GLN374 LYS375 LEU376 GLN377 LYS378 ILE379 ASP380 LEU381 ARG382 HIS383 ASN384 GLU385 ILE386 TYR387 GLU388 ILE389 LYS390 VAL391 ASP392 THR393 PHE394 GLN395 GLN396 LEU397 LEU398 SER399 LEU400 ARG401 SER402 LEU403 ASN404 LEU405 ALA406 TRP407 ASN408 LYS409 ILE410 ALA411 ILE412 ILE413 HIS414 PRO415 ASN416 ALA417 PHE418 SER419 THR420 LEU421 PRO422 SER423 LEU424 ILE425 LYS426 LEU427 ASP428 LEU429 SER430 SER431 ASN432 LEU433 LEU434 SER435 SER436 PHE437 PRO438 ILE439 THR440 GLY441 LEU442 HIS443 GLY444 LEU445 THR446 HIS447 LEU448 LYS449 LEU450 THR451 GLY452 ASN453 HIS454 ALA455 LEU456 GLN457 SER458 LEU459 ILE460 SER461 SER462 GLU463 ASN464 PHE465 PRO466 GLU467 LEU468 LYS469 VAL470 ILE471 GLU472 MET473 PRO474 TYR475 ALA476 TYR477 GLN478 CYS479 CYS480 ALA481 PHE482 GLY483 HIS537 SER538 VAL539 GLN540 CYS541 SER542 PRO543
Unit 2 GLY30 PRO31 ARG32 GLY33 CYS34 PRO35 THR36 HIS37 CYS38 HIS39 CYS40 GLU41 PRO42 ASP43 GLY44 ARG45 MET46 LEU47 LEU48 ARG49 VAL50 ASP51 CYS52 SER53 ASP54 LEU55 GLY56 LEU57 SER58 GLU59 LEU60 PRO61 SER62 ASN63 LEU64 SER65 VAL66 PHE67 THR68 SER69 TYR70 LEU71 ASP72 LEU73 SER74 MET75 ASN76 ASN77 ILE78 SER79 GLN80 LEU81 LEU82 PRO83 ASN84 PRO85 LEU86 PRO87 SER88 LEU89 ARG90 PHE91 LEU92 GLU93 GLU94 LEU95 ARG96 LEU97 ALA98 GLY99 ASN100 ALA101 LEU102 THR103 TYR104 ILE105 PRO106 LYS107 GLY108 ALA109 PHE110 THR111 GLY112 LEU113 TYR114 SER115 LEU116 LYS117 VAL118 LEU119 MET120 LEU121 GLN122 ASN123 ASN124 GLN125 LEU126 ARG127 HIS128 VAL129 PRO130 THR131 GLU132 ALA133 LEU134 GLN135 ASN136 LEU137 ARG138 SER139 LEU140 GLN141 SER142 LEU143 ARG144 LEU145 ASP146 ALA147 ASN148 HIS149 ILE150 SER151 TYR152 VAL153 PRO154 PRO155 SER156 CYS157 PHE158 SER159 GLY160 LEU161 HIS162 SER163 LEU164 ARG165 HIS166 LEU167 TRP168 LEU169 ASP170 ASP171 ASN172 ALA173 LEU174 THR175 GLU176 ILE177 PRO178 VAL179 GLN180 ALA181 PHE182 ARG183 SER184 LEU185 SER186 ALA187 LEU188 GLN189 ALA190 MET191 THR192 LEU193 ALA194 LEU195 ASN196 LYS197 ILE198 HIS199 HIS200 ILE201 PRO202 ASP203 TYR204 ALA205 PHE206 GLY207 ASN208 LEU209 SER210 SER211 LEU212 VAL213 VAL214 LEU215 HIS216 LEU217 HIS218 ASN219 ASN220 ARG221 ILE222 HIS223 SER224 LEU225 GLY226 LYS227 LYS228 CYS229 PHE230 ASP231 GLY232 LEU233 HIS234 SER235 LEU236 GLU237 THR238 LEU239 ASP240 LEU241 ASN242 TYR243 ASN244 ASN245 LEU246 ASP247 GLU248 PHE249 PRO250 THR251 ALA252 ILE253 ARG254 THR255 LEU256 SER257 ASN258 LEU259 LYS260 GLU261 LEU262 GLY263 PHE264 HIS265 SER266 ASN267 ASN268 ILE269 ARG270 SER271 ILE272 PRO273 GLU274 LYS275 ALA276 PHE277 VAL278 GLY279 ASN280 PRO281 SER282 LEU283 ILE284 THR285 ILE286 HIS287 PHE288 TYR289 ASP290 ASN291 PRO292 ILE293 GLN294 PHE295 VAL296 GLY297 ARG298 SER299 ALA300 PHE301 GLN302 HIS303 LEU304 PRO305 GLU306 LEU307 ARG308 THR309 LEU310 THR311 LEU312 ASN313 GLY314 ALA315 SER316 GLN317 ILE318 THR319 GLU320 PHE321 PRO322 ASP323 LEU324 THR325 GLY326 THR327 ALA328 ASN329 LEU330 GLU331 SER332 LEU333 THR334 LEU335 THR336 GLY337 ALA338 GLN339 ILE340 SER341 SER342 LEU343 PRO344 GLN345 THR346 VAL347 CYS348 ASN349 GLN350 LEU351 PRO352 ASN353 LEU354 GLN355 VAL356 LEU357 ASP358 LEU359 SER360 TYR361 ASN362 LEU363 LEU364 GLU365 ASP366 LEU367 PRO368 SER369 PHE370 SER371 VAL372 CYS373 GLN374 LYS375 LEU376 GLN377 LYS378 ILE379 ASP380 LEU381 ARG382 HIS383 ASN384 GLU385 ILE386 TYR387 GLU388 ILE389 LYS390 VAL391 ASP392 THR393 PHE394 GLN395 GLN396 LEU397 LEU398 SER399 LEU400 ARG401 SER402 LEU403 ASN404 LEU405 ALA406 TRP407 ASN408 LYS409 ILE410 ALA411 ILE412 ILE413 HIS414 PRO415 ASN416 ALA417 PHE418 SER419 THR420 LEU421 PRO422 SER423 LEU424 ILE425 LYS426 LEU427 ASP428 LEU429 SER430 SER431 ASN432 LEU433 LEU434 SER435 SER436 PHE437 PRO438 ILE439 THR440 GLY441 LEU442 HIS443 GLY444 LEU445 THR446 HIS447 LEU448 LYS449 LEU450 THR451 GLY452 ASN453 HIS454 ALA455 LEU456 GLN457 SER458 LEU459 ILE460 SER461 SER462 GLU463 ASN464 PHE465 PRO466 GLU467 LEU468 LYS469 VAL470 ILE471 GLU472 MET473 PRO474 TYR475 ALA476 TYR477 GLN478 CYS479 CYS480 ALA481 PHE482 HIS537 SER538 VAL539 GLN540 CYS541 SER542 PRO543 SER544 PRO545 GLY546
Unit 3 CYS40 ALA41 LYS42 GLY43 CYS44 GLU45 LEU46 CYS47 SER48 GLU49 VAL50 ASN51 GLY52 CYS53 LEU54 LYS55 CYS56 SER57 PRO58 LYS59 LEU60 PHE61 ILE62 LEU63 LEU64 GLU65 ARG66 ASN67 ASP68 ILE69 ARG70 GLN71 VAL72 GLY73 VAL74 CYS75 LEU76 PRO77 SER78 CYS79 PRO80 PRO81 GLY82 TYR83 PHE84 ASP85 ALA86 ARG87 ASN88 PRO89 ASP90 MET91 ASN92 LYS93 CYS94 ILE95 LYS96 CYS97 LYS98 ILE99 GLU100 HIS101 CYS102 GLU103 ALA104 CYS105 PHE106 SER107 HIS108 ASN109 PHE110 CYS111 THR112 LYS113 CYS114 LYS115 GLU116 GLY117 LEU118 TYR119 LEU120 HIS121 LYS122 GLY123 ARG124 CYS125 TYR126 PRO127 ALA128 CYS129 PRO130 GLU131 GLY132 THR139 MET140 GLU141 CYS142 SER143
Unit 4 CYS40 ALA41 LYS42 GLY43 CYS44 GLU45 LEU46 CYS47 SER48 GLU49 VAL50 ASN51 GLY52 CYS53 LEU54 LYS55 CYS56 SER57 PRO58 LYS59 LEU60 PHE61 ILE62 LEU63 LEU64 GLU65 ARG66 ASN67 ASP68 ILE69 ARG70 GLN71 VAL72 GLY73 VAL74 CYS75 LEU76 PRO77 SER78 CYS79 PRO80 PRO81 GLY82 TYR83 PHE84 ASP85 ALA86 ARG87 ASN88 PRO89 ASP90 MET91 ASN92 LYS93 CYS94 ILE95 LYS96 CYS97 LYS98 ILE99 GLU100 HIS101 CYS102 GLU103 ALA104 CYS105 PHE106 SER107 HIS108 ASN109 PHE110 CYS111 THR112 LYS113 CYS114 LYS115 GLU116 GLY117 LEU118 TYR119 LEU120 HIS121 LYS122 GLY123 ARG124 CYS125 TYR126 PRO127 ALA128 CYS129 PRO130 GLU131 GLY132 CYS142
Unit 5 GLN44 LYS45 ALA46 ILE47 ILE48 ARG49 VAL50 ILE51 PRO52 LEU53 LYS54 MET55 ASP56 PRO57 THR58 GLY59 LYS60 LEU61 ASN62 LEU63 THR64 LEU65 GLU66 GLY67 VAL68 PHE69 ALA70 GLY71 VAL72 ALA73 GLU74 ILE75 THR76 PRO77 ALA78 GLU79 GLY80 LYS81 LEU82 MET83 GLN84 SER85 HIS86 PRO87 LEU88 TYR89 LEU90 CYS91 ASN92 ALA93 SER94 ASP95 ASP96 ASP97 ASN98 LEU99 GLU100 PRO101 GLY102 PHE103 ILE104 SER105 ILE106 VAL107 LYS108 LEU109 GLU110 SER111 PRO112 ARG113 ARG114 ALA115 PRO116 ARG117 PRO118 CYS119 LEU120 SER121 LEU122 ALA123 SER124 LYS125 ALA126 ARG127 MET128 ALA129 GLY130 GLU131 ARG132 GLY133 ALA134 SER135 ALA136 VAL137 LEU138 PHE139 ASP140 ILE141 THR142 GLU143 ASP144 ARG145 ALA146 ALA147 ALA148 GLU149 GLN150 LEU151 GLN152 GLN153 PRO154 LEU155 GLY156 LEU157 THR158 TRP159 PRO160 VAL161 VAL162 LEU163 ILE164 TRP165 GLY166 ASN167 ASP168 ALA169 GLU170 LYS171 LEU172 MET173 GLU174 PHE175 VAL176 TYR177 LYS178 ASN179 GLN180 LYS181 ALA182 HIS183 VAL184 ARG185 ILE186 GLU187 LEU188 LYS189 GLU190 PRO191 PRO192
Unit 6 GLN44 LYS45 ALA46 ILE47 ILE48 ARG49 VAL50 ILE51 PRO52 LEU53 LYS54 MET55 ASP56 PRO57 THR58 GLY59 LYS60 LEU61 ASN62 LEU63 THR64 LEU65 GLU66 GLY67 VAL68 PHE69 ALA70 GLY71 VAL72 ALA73 GLU74 ILE75 THR76 PRO77 ALA78 GLU79 GLY80 LYS81 LEU82 MET83 GLN84 SER85 HIS86 PRO87 LEU88 TYR89 LEU90 CYS91 ASN92 ALA93 SER94 ASP95 ASP96 ASP97 ASN98 LEU99 GLU100 PRO101 GLY102 PHE103 ILE104 SER105 ILE106 VAL107 LYS108 LEU109 GLU110 SER111 PRO112 ARG113 ARG114 ALA115 PRO116 ARG117 PRO118 CYS119 LEU120 SER121 LEU122 ALA123 SER124 LYS125 ALA126 ARG127 MET128 ALA129 GLY130 GLU131 ARG132 GLY133 ALA134 SER135 ALA136 VAL137 LEU138 PHE139 ASP140 ILE141 THR142 GLU143 ASP144 ARG145 ALA146 ALA147 ALA148 GLU149 GLN150 LEU151 GLN152 GLN153 PRO154 LEU155 GLY156 LEU157 THR158 TRP159 PRO160 VAL161 VAL162 LEU163 ILE164 TRP165 GLY166 ASN167 ASP168 ALA169 GLU170 LYS171 LEU172 MET173 GLU174 PHE175 VAL176 TYR177 LYS178 ASN179 GLN180 LYS181 ALA182 HIS183 VAL184 ARG185 ILE186 GLU187 LEU188 LYS189 GLU190 PRO191
Ligands
Unit 7 NAG601
Unit 8 NI601 NAG602
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany