4KDP - Sequence, Chains, Asymmetric and Biological Units

• Title: TCAR-SSDNA COMPLEX CRYSTAL STRUCTURE REVEALS THE NOVEL SSDNA MECHANISM OF THE MARR FAMILY PROTEINS
• Keywords: MULTIPLE DRUG RESISTANCE, SSDNA BINDING, ANTIBIOTICS, STAPHY TRANSCRIPTION-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4KDP	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	TCAR TRANSCRIPTION REGULATOR	A	151	1216	0
2	Protein	TCAR TRANSCRIPTION REGULATOR	B	151	1217	0
3	Protein	TCAR TRANSCRIPTION REGULATOR	C	151	1217	0
4	Protein	TCAR TRANSCRIPTION REGULATOR	D	151	1217	0
5	Protein	TCAR TRANSCRIPTION REGULATOR	E	150	1208	0
6	Protein	TCAR TRANSCRIPTION REGULATOR	F	151	1217	0
7	Protein	TCAR TRANSCRIPTION REGULATOR	G	151	1217	0
8	Other macromolecule	DNA (5'- D(*CP*GP*CP*AP*GP*CP*GP*CP*GP*CP*AP*GP*CP*CP*CP*TP*A)-3')	H	11	222	0
9	Other macromolecule	DNA (5'- D(*CP*GP*CP*AP*GP*CP*GP*CP*GP*CP*AP*GP*CP*CP*CP*TP*A)-3')	J	10	198	0
10	Ligand	TCAR TRANSCRIPTION REGULATOR	B	3	0	16
11	Ligand	TCAR TRANSCRIPTION REGULATOR	E	1	0	4
12	Ligand	TCAR TRANSCRIPTION REGULATOR	F	2	0	12
13	Ligand	DNA (5'- D(*CP*GP*CP*AP*GP*CP*GP*CP*GP*CP*AP*GP*CP*CP*CP*TP*A)-3')	H	3	0	16
14	Ligand	DNA (5'- D(*CP*GP*CP*AP*GP*CP*GP*CP*GP*CP*AP*GP*CP*CP*CP*TP*A)-3')	J	2	0	16
15	Water			91	0	91
total				1179	8929	155

Proteins

Unit 1	MET 1 VAL 2 ARG 3 ARG 4 ILE 5 GLU 6 ASP 7 HIS 8 ILE 9 SER 10 PHE 11 LEU 12 GLU 13 LYS 14 PHE 15 ILE 16 ASN 17 ASP 18 VAL 19 ASN 20 THR 21 LEU 22 THR 23 ALA 24 LYS 25 LEU 26 LEU 27 LYS 28 ASP 29 LEU 30 GLN 31 THR 32 GLU 33 TYR 34 GLY 35 ILE 36 SER 37 ALA 38 GLU 39 GLN 40 SER 41 HIS 42 VAL 43 LEU 44 ASN 45 MET 46 LEU 47 SER 48 ILE 49 GLU 50 ALA 51 LEU 52 THR 53 VAL 54 GLY 55 GLN 56 ILE 57 THR 58 GLU 59 LYS 60 GLN 61 GLY 62 VAL 63 ASN 64 LYS 65 ALA 66 ALA 67 VAL 68 SER 69 ARG 70 ARG 71 VAL 72 LYS 73 LYS 74 LEU 75 LEU 76 ASN 77 ALA 78 GLU 79 LEU 80 VAL 81 LYS 82 LEU 83 GLU 84 LYS 85 PRO 86 ASP 87 SER 88 ASN 89 THR 90 ASP 91 GLN 92 ARG 93 LEU 94 LYS 95 ILE 96 ILE 97 LYS 98 LEU 99 SER 100 ASN 101 LYS 102 GLY 103 LYS 104 LYS 105 TYR 106 ILE 107 LYS 108 GLU 109 ARG 110 LYS 111 ALA 112 ILE 113 MET 114 SER 115 HIS 116 ILE 117 ALA 118 SER 119 ASP 120 MET 121 THR 122 SER 123 ASP 124 PHE 125 ASP 126 SER 127 LYS 128 GLU 129 ILE 130 GLU 131 LYS 132 VAL 133 ARG 134 GLN 135 VAL 136 LEU 137 GLU 138 ILE 139 ILE 140 ASP 141 TYR 142 ARG 143 ILE 144 GLN 145 SER 146 TYR 147 THR 148 SER 149 LYS 150 LEU 151
Unit 2	MET 1 VAL 2 ARG 3 ARG 4 ILE 5 GLU 6 ASP 7 HIS 8 ILE 9 SER 10 PHE 11 LEU 12 GLU 13 LYS 14 PHE 15 ILE 16 ASN 17 ASP 18 VAL 19 ASN 20 THR 21 LEU 22 THR 23 ALA 24 LYS 25 LEU 26 LEU 27 LYS 28 ASP 29 LEU 30 GLN 31 THR 32 GLU 33 TYR 34 GLY 35 ILE 36 SER 37 ALA 38 GLU 39 GLN 40 SER 41 HIS 42 VAL 43 LEU 44 ASN 45 MET 46 LEU 47 SER 48 ILE 49 GLU 50 ALA 51 LEU 52 THR 53 VAL 54 GLY 55 GLN 56 ILE 57 THR 58 GLU 59 LYS 60 GLN 61 GLY 62 VAL 63 ASN 64 LYS 65 ALA 66 ALA 67 VAL 68 SER 69 ARG 70 ARG 71 VAL 72 LYS 73 LYS 74 LEU 75 LEU 76 ASN 77 ALA 78 GLU 79 LEU 80 VAL 81 LYS 82 LEU 83 GLU 84 LYS 85 PRO 86 ASP 87 SER 88 ASN 89 THR 90 ASP 91 GLN 92 ARG 93 LEU 94 LYS 95 ILE 96 ILE 97 LYS 98 LEU 99 SER 100 ASN 101 LYS 102 GLY 103 LYS 104 LYS 105 TYR 106 ILE 107 LYS 108 GLU 109 ARG 110 LYS 111 ALA 112 ILE 113 MET 114 SER 115 HIS 116 ILE 117 ALA 118 SER 119 ASP 120 MET 121 THR 122 SER 123 ASP 124 PHE 125 ASP 126 SER 127 LYS 128 GLU 129 ILE 130 GLU 131 LYS 132 VAL 133 ARG 134 GLN 135 VAL 136 LEU 137 GLU 138 ILE 139 ILE 140 ASP 141 TYR 142 ARG 143 ILE 144 GLN 145 SER 146 TYR 147 THR 148 SER 149 LYS 150 LEU 151
Unit 3	MET 1 VAL 2 ARG 3 ARG 4 ILE 5 GLU 6 ASP 7 HIS 8 ILE 9 SER 10 PHE 11 LEU 12 GLU 13 LYS 14 PHE 15 ILE 16 ASN 17 ASP 18 VAL 19 ASN 20 THR 21 LEU 22 THR 23 ALA 24 LYS 25 LEU 26 LEU 27 LYS 28 ASP 29 LEU 30 GLN 31 THR 32 GLU 33 TYR 34 GLY 35 ILE 36 SER 37 ALA 38 GLU 39 GLN 40 SER 41 HIS 42 VAL 43 LEU 44 ASN 45 MET 46 LEU 47 SER 48 ILE 49 GLU 50 ALA 51 LEU 52 THR 53 VAL 54 GLY 55 GLN 56 ILE 57 THR 58 GLU 59 LYS 60 GLN 61 GLY 62 VAL 63 ASN 64 LYS 65 ALA 66 ALA 67 VAL 68 SER 69 ARG 70 ARG 71 VAL 72 LYS 73 LYS 74 LEU 75 LEU 76 ASN 77 ALA 78 GLU 79 LEU 80 VAL 81 LYS 82 LEU 83 GLU 84 LYS 85 PRO 86 ASP 87 SER 88 ASN 89 THR 90 ASP 91 GLN 92 ARG 93 LEU 94 LYS 95 ILE 96 ILE 97 LYS 98 LEU 99 SER 100 ASN 101 LYS 102 GLY 103 LYS 104 LYS 105 TYR 106 ILE 107 LYS 108 GLU 109 ARG 110 LYS 111 ALA 112 ILE 113 MET 114 SER 115 HIS 116 ILE 117 ALA 118 SER 119 ASP 120 MET 121 THR 122 SER 123 ASP 124 PHE 125 ASP 126 SER 127 LYS 128 GLU 129 ILE 130 GLU 131 LYS 132 VAL 133 ARG 134 GLN 135 VAL 136 LEU 137 GLU 138 ILE 139 ILE 140 ASP 141 TYR 142 ARG 143 ILE 144 GLN 145 SER 146 TYR 147 THR 148 SER 149 LYS 150 LEU 151
Unit 4	MET 1 VAL 2 ARG 3 ARG 4 ILE 5 GLU 6 ASP 7 HIS 8 ILE 9 SER 10 PHE 11 LEU 12 GLU 13 LYS 14 PHE 15 ILE 16 ASN 17 ASP 18 VAL 19 ASN 20 THR 21 LEU 22 THR 23 ALA 24 LYS 25 LEU 26 LEU 27 LYS 28 ASP 29 LEU 30 GLN 31 THR 32 GLU 33 TYR 34 GLY 35 ILE 36 SER 37 ALA 38 GLU 39 GLN 40 SER 41 HIS 42 VAL 43 LEU 44 ASN 45 MET 46 LEU 47 SER 48 ILE 49 GLU 50 ALA 51 LEU 52 THR 53 VAL 54 GLY 55 GLN 56 ILE 57 THR 58 GLU 59 LYS 60 GLN 61 GLY 62 VAL 63 ASN 64 LYS 65 ALA 66 ALA 67 VAL 68 SER 69 ARG 70 ARG 71 VAL 72 LYS 73 LYS 74 LEU 75 LEU 76 ASN 77 ALA 78 GLU 79 LEU 80 VAL 81 LYS 82 LEU 83 GLU 84 LYS 85 PRO 86 ASP 87 SER 88 ASN 89 THR 90 ASP 91 GLN 92 ARG 93 LEU 94 LYS 95 ILE 96 ILE 97 LYS 98 LEU 99 SER 100 ASN 101 LYS 102 GLY 103 LYS 104 LYS 105 TYR 106 ILE 107 LYS 108 GLU 109 ARG 110 LYS 111 ALA 112 ILE 113 MET 114 SER 115 HIS 116 ILE 117 ALA 118 SER 119 ASP 120 MET 121 THR 122 SER 123 ASP 124 PHE 125 ASP 126 SER 127 LYS 128 GLU 129 ILE 130 GLU 131 LYS 132 VAL 133 ARG 134 GLN 135 VAL 136 LEU 137 GLU 138 ILE 139 ILE 140 ASP 141 TYR 142 ARG 143 ILE 144 GLN 145 SER 146 TYR 147 THR 148 SER 149 LYS 150 LEU 151
Unit 5	MET 1 VAL 2 ARG 3 ARG 4 ILE 5 GLU 6 ASP 7 HIS 8 ILE 9 SER 10 PHE 11 LEU 12 GLU 13 LYS 14 PHE 15 ILE 16 ASN 17 ASP 18 VAL 19 ASN 20 THR 21 LEU 22 THR 23 ALA 24 LYS 25 LEU 26 LEU 27 LYS 28 ASP 29 LEU 30 GLN 31 THR 32 GLU 33 TYR 34 GLY 35 ILE 36 SER 37 ALA 38 GLU 39 GLN 40 SER 41 HIS 42 VAL 43 LEU 44 ASN 45 MET 46 LEU 47 SER 48 ILE 49 GLU 50 ALA 51 LEU 52 THR 53 VAL 54 GLY 55 GLN 56 ILE 57 THR 58 GLU 59 LYS 60 GLN 61 GLY 62 VAL 63 ASN 64 LYS 65 ALA 66 ALA 67 VAL 68 SER 69 ARG 70 ARG 71 VAL 72 LYS 73 LYS 74 LEU 75 LEU 76 ASN 77 ALA 78 GLU 79 LEU 80 VAL 81 LYS 82 LEU 83 GLU 84 LYS 85 PRO 86 ASP 87 SER 88 ASN 89 THR 90 ASP 91 GLN 92 ARG 93 LEU 94 LYS 95 ILE 96 ILE 97 LYS 98 LEU 99 SER 100 ASN 101 LYS 102 GLY 103 LYS 104 LYS 105 TYR 106 ILE 107 LYS 108 GLU 109 ARG 110 LYS 111 ALA 112 ILE 113 MET 114 SER 115 HIS 116 ILE 117 ALA 118 SER 119 ASP 120 MET 121 THR 122 SER 123 ASP 124 PHE 125 ASP 126 SER 127 LYS 128 GLU 129 ILE 130 GLU 131 LYS 132 VAL 133 ARG 134 GLN 135 VAL 136 LEU 137 GLU 138 ILE 139 ILE 140 ASP 141 TYR 142 ARG 143 ILE 144 GLN 145 SER 146 TYR 147 THR 148 SER 149 LYS 150
Unit 6	MET 1 VAL 2 ARG 3 ARG 4 ILE 5 GLU 6 ASP 7 HIS 8 ILE 9 SER 10 PHE 11 LEU 12 GLU 13 LYS 14 PHE 15 ILE 16 ASN 17 ASP 18 VAL 19 ASN 20 THR 21 LEU 22 THR 23 ALA 24 LYS 25 LEU 26 LEU 27 LYS 28 ASP 29 LEU 30 GLN 31 THR 32 GLU 33 TYR 34 GLY 35 ILE 36 SER 37 ALA 38 GLU 39 GLN 40 SER 41 HIS 42 VAL 43 LEU 44 ASN 45 MET 46 LEU 47 SER 48 ILE 49 GLU 50 ALA 51 LEU 52 THR 53 VAL 54 GLY 55 GLN 56 ILE 57 THR 58 GLU 59 LYS 60 GLN 61 GLY 62 VAL 63 ASN 64 LYS 65 ALA 66 ALA 67 VAL 68 SER 69 ARG 70 ARG 71 VAL 72 LYS 73 LYS 74 LEU 75 LEU 76 ASN 77 ALA 78 GLU 79 LEU 80 VAL 81 LYS 82 LEU 83 GLU 84 LYS 85 PRO 86 ASP 87 SER 88 ASN 89 THR 90 ASP 91 GLN 92 ARG 93 LEU 94 LYS 95 ILE 96 ILE 97 LYS 98 LEU 99 SER 100 ASN 101 LYS 102 GLY 103 LYS 104 LYS 105 TYR 106 ILE 107 LYS 108 GLU 109 ARG 110 LYS 111 ALA 112 ILE 113 MET 114 SER 115 HIS 116 ILE 117 ALA 118 SER 119 ASP 120 MET 121 THR 122 SER 123 ASP 124 PHE 125 ASP 126 SER 127 LYS 128 GLU 129 ILE 130 GLU 131 LYS 132 VAL 133 ARG 134 GLN 135 VAL 136 LEU 137 GLU 138 ILE 139 ILE 140 ASP 141 TYR 142 ARG 143 ILE 144 GLN 145 SER 146 TYR 147 THR 148 SER 149 LYS 150 LEU 151
Unit 7	MET 1 VAL 2 ARG 3 ARG 4 ILE 5 GLU 6 ASP 7 HIS 8 ILE 9 SER 10 PHE 11 LEU 12 GLU 13 LYS 14 PHE 15 ILE 16 ASN 17 ASP 18 VAL 19 ASN 20 THR 21 LEU 22 THR 23 ALA 24 LYS 25 LEU 26 LEU 27 LYS 28 ASP 29 LEU 30 GLN 31 THR 32 GLU 33 TYR 34 GLY 35 ILE 36 SER 37 ALA 38 GLU 39 GLN 40 SER 41 HIS 42 VAL 43 LEU 44 ASN 45 MET 46 LEU 47 SER 48 ILE 49 GLU 50 ALA 51 LEU 52 THR 53 VAL 54 GLY 55 GLN 56 ILE 57 THR 58 GLU 59 LYS 60 GLN 61 GLY 62 VAL 63 ASN 64 LYS 65 ALA 66 ALA 67 VAL 68 SER 69 ARG 70 ARG 71 VAL 72 LYS 73 LYS 74 LEU 75 LEU 76 ASN 77 ALA 78 GLU 79 LEU 80 VAL 81 LYS 82 LEU 83 GLU 84 LYS 85 PRO 86 ASP 87 SER 88 ASN 89 THR 90 ASP 91 GLN 92 ARG 93 LEU 94 LYS 95 ILE 96 ILE 97 LYS 98 LEU 99 SER 100 ASN 101 LYS 102 GLY 103 LYS 104 LYS 105 TYR 106 ILE 107 LYS 108 GLU 109 ARG 110 LYS 111 ALA 112 ILE 113 MET 114 SER 115 HIS 116 ILE 117 ALA 118 SER 119 ASP 120 MET 121 THR 122 SER 123 ASP 124 PHE 125 ASP 126 SER 127 LYS 128 GLU 129 ILE 130 GLU 131 LYS 132 VAL 133 ARG 134 GLN 135 VAL 136 LEU 137 GLU 138 ILE 139 ILE 140 ASP 141 TYR 142 ARG 143 ILE 144 GLN 145 SER 146 TYR 147 THR 148 SER 149 LYS 150 LEU 151

Other macromolecules

Unit 8	DC 1 DG 2 DC 3 DA 4 DG 5 DC 6 DG 7 DC 8 DG 9 DC 10 DA 11
Unit 9	DC 1 DG 2 DC 3 DG 4 DC 5 DA 6 DG 7 DC 8 DC 9 DC 10

Ligands

Unit 10	EDO 2001 EDO 2002 TRS 2003
Unit 11	EDO 201
Unit 12	EDO 201 TRS 202
Unit 13	EDO 101 EDO 102 TRS 103
Unit 14	TRS 101 TRS 102