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Sequence, Chains, Asymmetric and Biological Units

Title BINARY COMPLEX OF 9N DNA POLYMERASE IN THE REPLICATIVE STATE
Keywords DNA POLYMERASE, BINARY COMPLEX, TRANSFERASE-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4K8X     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA POLYMERASE  A 759 6217 0
2  Other macromolecule   DNA (5'- D(P*AP*AP*AP*GP*GP*CP*GP*CP*AP*GP*TP*TP*CP*GP*CP*G)-3')  T 16 332 0
3  DNA    P 12 223 18
4  Ligand   DNA POLYMERASE  A 12 0 56
5  Ligand   DNA (5'- D(P*AP*AP*AP*GP*GP*CP*GP*CP*AP*GP*TP*TP*CP*GP*CP*G)-3')  T 2 0 39
6 Water     134 0 134
total       935 6772 247
Proteins
Unit 1 MET1 ILE2 LEU3 ASP4 THR5 ASP6 TYR7 ILE8 THR9 GLU10 ASN11 GLY12 LYS13 PRO14 VAL15 ILE16 ARG17 VAL18 PHE19 LYS20 LYS21 GLU22 ASN23 GLY24 GLU25 PHE26 LYS27 ILE28 GLU29 TYR30 ASP31 ARG32 THR33 PHE34 GLU35 PRO36 TYR37 PHE38 TYR39 ALA40 LEU41 LEU42 LYS43 ASP44 ASP45 SER46 ALA47 ILE48 GLU49 ASP50 VAL51 LYS52 LYS53 VAL54 THR55 ALA56 LYS57 ARG58 HIS59 GLY60 THR61 VAL62 VAL63 LYS64 VAL65 LYS66 ARG67 ALA68 GLU69 LYS70 VAL71 GLN72 LYS73 LYS74 PHE75 LEU76 GLY77 ARG78 PRO79 ILE80 GLU81 VAL82 TRP83 LYS84 LEU85 TYR86 PHE87 ASN88 HIS89 PRO90 GLN91 ASP92 VAL93 PRO94 ALA95 ILE96 ARG97 ASP98 ARG99 ILE100 ARG101 ALA102 HIS103 PRO104 ALA105 VAL106 VAL107 ASP108 ILE109 TYR110 GLU111 TYR112 ASP113 ILE114 PRO115 PHE116 ALA117 LYS118 ARG119 TYR120 LEU121 ILE122 ASP123 LYS124 GLY125 LEU126 ILE127 PRO128 MET129 GLU130 GLY131 ASP132 GLU133 GLU134 LEU135 THR136 MET137 LEU138 ALA139 PHE140 ALA141 ILE142 ALA143 THR144 LEU145 TYR146 HIS147 GLU148 GLY149 GLU150 GLU151 PHE152 GLY153 THR154 GLY155 PRO156 ILE157 LEU158 MET159 ILE160 SER161 TYR162 ALA163 ASP164 GLY165 SER166 GLU167 ALA168 ARG169 VAL170 ILE171 THR172 TRP173 LYS174 LYS175 ILE176 ASP177 LEU178 PRO179 TYR180 VAL181 ASP182 VAL183 VAL184 SER185 THR186 GLU187 LYS188 GLU189 MET190 ILE191 LYS192 ARG193 PHE194 LEU195 ARG196 VAL197 VAL198 ARG199 GLU200 LYS201 ASP202 PRO203 ASP204 VAL205 LEU206 ILE207 THR208 TYR209 ASN210 GLY211 ASP212 ASN213 PHE214 ASP215 PHE216 ALA217 TYR218 LEU219 LYS220 LYS221 ARG222 CYS223 GLU224 GLU225 LEU226 GLY227 ILE228 LYS229 PHE230 THR231 LEU232 GLY233 ARG234 ASP235 GLY236 SER237 GLU238 PRO239 LYS240 ILE241 GLN242 ARG243 MET244 GLY245 ASP246 ARG247 PHE248 ALA249 VAL250 GLU251 VAL252 LYS253 GLY254 ARG255 ILE256 HIS257 PHE258 ASP259 LEU260 TYR261 PRO262 VAL263 ILE264 ARG265 ARG266 THR267 ILE268 ASN269 LEU270 PRO271 THR272 TYR273 THR274 LEU275 GLU276 ALA277 VAL278 TYR279 GLU280 ALA281 VAL282 PHE283 GLY284 LYS285 PRO286 LYS287 GLU288 LYS289 VAL290 TYR291 ALA292 GLU293 GLU294 ILE295 ALA296 GLN297 ALA298 TRP299 GLU300 SER301 GLY302 GLU303 GLY304 LEU305 GLU306 ARG307 VAL308 ALA309 ARG310 TYR311 SER312 MET313 GLU314 ASP315 ALA316 LYS317 VAL318 THR319 TYR320 GLU321 LEU322 GLY323 ARG324 GLU325 PHE326 PHE327 PRO328 MET329 GLU330 ALA331 GLN332 LEU333 SER334 ARG335 LEU336 ILE337 GLY338 GLN339 SER340 LEU341 TRP342 ASP343 VAL344 SER345 ARG346 SER347 SER348 THR349 GLY350 ASN351 LEU352 VAL353 GLU354 TRP355 PHE356 LEU357 LEU358 ARG359 LYS360 ALA361 TYR362 LYS363 ARG364 ASN365 GLU366 LEU367 ALA368 PRO369 ASN370 LYS371 PRO372 ASP373 GLU374 ARG375 GLU376 LEU377 ALA378 ARG379 ARG380 ARG381 GLY382 GLY383 TYR384 ALA385 GLY386 GLY387 TYR388 VAL389 LYS390 GLU391 PRO392 GLU393 ARG394 GLY395 LEU396 TRP397 ASP398 ASN399 ILE400 VAL401 TYR402 LEU403 ASP404 PHE405 ARG406 SER407 LEU408 TYR409 PRO410 SER411 ILE412 ILE413 ILE414 THR415 HIS416 ASN417 VAL418 SER419 PRO420 ASP421 THR422 LEU423 ASN424 ARG425 GLU426 GLY427 CYS428 LYS429 GLU430 TYR431 ASP432 VAL433 ALA434 PRO435 GLU436 VAL437 GLY438 HIS439 LYS440 PHE441 CYS442 LYS443 ASP444 PHE445 PRO446 GLY447 PHE448 ILE449 PRO450 SER451 LEU452 LEU453 GLY454 ASP455 LEU456 LEU457 GLU458 GLU459 ARG460 GLN461 LYS462 ILE463 LYS464 ARG465 LYS466 MET467 LYS468 ALA469 THR470 VAL471 ASP472 PRO473 LEU474 GLU475 LYS476 LYS477 LEU478 LEU479 ASP480 TYR481 ARG482 GLN483 ARG484 ALA485 ILE486 LYS487 ILE488 LEU489 ALA490 ASN491 SER492 PHE493 TYR494 GLY495 TYR496 TYR497 GLY498 TYR499 ALA500 LYS501 ALA502 ARG503 TRP504 TYR505 CYS506 LYS507 GLU508 CYS509 ALA510 GLU511 SER512 VAL513 THR514 ALA515 TRP516 GLY517 ARG518 GLU519 TYR520 ILE521 GLU522 MET523 VAL524 ILE525 ARG526 GLU527 LEU528 GLU529 GLU530 LYS531 PHE532 GLY533 PHE534 LYS535 VAL536 LEU537 TYR538 ALA539 ASP540 THR541 ASP542 GLY543 LEU544 HIS545 ALA546 THR547 ILE548 PRO549 GLY550 ALA551 ASP552 ALA553 GLU554 THR555 VAL556 LYS557 LYS558 LYS559 ALA560 LYS561 GLU562 PHE563 LEU564 LYS565 TYR566 ILE567 ASN568 PRO569 LYS570 LEU571 PRO572 GLY573 LEU574 LEU575 GLU576 LEU577 GLU578 TYR579 GLU580 GLY581 PHE582 TYR583 VAL584 ARG585 GLY586 PHE587 PHE588 VAL589 THR590 LYS591 LYS592 LYS593 TYR594 ALA595 VAL596 ILE597 ASP598 GLU599 GLU600 GLY601 LYS602 ILE603 THR604 THR605 ARG606 GLY607 LEU608 GLU609 ILE610 VAL611 ARG612 ARG613 ASP614 TRP615 SER616 GLU617 ILE618 ALA619 LYS620 GLU621 THR622 GLN623 ALA624 ARG625 VAL626 LEU627 GLU628 ALA629 ILE630 LEU631 LYS632 HIS633 GLY634 ASP635 VAL636 GLU637 GLU638 ALA639 VAL640 ARG641 ILE642 VAL643 LYS644 GLU645 VAL646 THR647 GLU648 LYS649 LEU650 SER651 LYS652 TYR653 GLU654 VAL655 PRO656 PRO657 GLU658 LYS659 LEU660 VAL661 ILE662 HIS663 GLU664 GLN665 ILE666 THR667 ARG668 ASP669 LEU670 ARG671 ASP672 TYR673 LYS674 ALA675 THR676 GLY677 PRO678 HIS679 VAL680 ALA681 VAL682 ALA683 LYS684 ARG685 LEU686 ALA687 ALA688 ARG689 GLY690 VAL691 LYS692 ILE693 ARG694 PRO695 GLY696 THR697 VAL698 ILE699 SER700 TYR701 ILE702 VAL703 LEU704 LYS705 GLY706 SER707 GLY708 ARG709 ILE710 GLY711 ASP712 ARG713 ALA714 ILE715 PRO716 ALA717 ASP718 GLU719 PHE720 ASP721 PRO722 THR723 LYS724 HIS725 ARG726 TYR727 ASP728 ALA729 GLU730 TYR731 TYR732 ILE733 GLU734 ASN735 GLN736 VAL737 LEU738 PRO739 ALA740 VAL741 GLU742 ARG743 ILE744 LEU745 LYS746 ALA747 PHE748 GLY749 TYR750 ARG751 LYS752 GLU753 ASP754 LEU755 ARG756 TYR757 GLN758 LYS759
Nucleic acids
Unit 3 DC1 DG2 DC3 DG4 DA5 DA6 DC7 DT8 DG9 DC10 DG11 DOC12
Other macromolecules
Unit 2 DA1 DA2 DA3 DG4 DG5 DC6 DG7 DC8 DA9 DG10 DT11 DT12 DC13 DG14 DC15 DG16
Ligands
Unit 4 SO4801 SO4802 SO4803 SO4804 SO4805 SO4806 SO4807 SO4808 SO4809 CL810 SO4811 SO4812
Unit 5 5CY101 EDO102
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany