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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF AD37 FIBER KNOB IN COMPLEX WITH TRIVALE ACID INHIBITOR ME0385
Keywords ADENOVIRUS, FIBER KNOB, PROTEIN CARBOHYDRATE INTERACTION, SI ACID, CARBOHYDRATE MIMIC, MULTIVALENT LIGAND, VIRAL PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4K6T     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   FIBER PROTEIN  A 186 1447 0
2  Protein   FIBER PROTEIN  B 186 1446 0
3  Protein   FIBER PROTEIN  C 182 1424 0
4  Protein   FIBER PROTEIN  E 185 1443 0
5  Protein   FIBER PROTEIN  F 186 1439 0
6  Protein   FIBER PROTEIN  G 185 1443 0
7  Ligand   FIBER PROTEIN  A 9 0 40
8  Ligand   FIBER PROTEIN  B 11 0 72
9  Ligand   FIBER PROTEIN  C 5 0 27
10  Ligand   FIBER PROTEIN  E 12 0 57
11  Ligand   FIBER PROTEIN  F 9 0 40
12  Ligand   FIBER PROTEIN  G 8 0 40
13 Water     822 0 822
total       1986 8642 1098
Proteins
Unit 1 LYS180 TYR181 ASP182 THR183 ARG184 THR185 LEU186 TRP187 THR188 THR189 PRO190 ASP191 THR192 SER193 PRO194 ASN195 CYS196 THR197 ILE198 ALA199 GLN200 ASP201 LYS202 ASP203 SER204 LYS205 LEU206 THR207 LEU208 VAL209 LEU210 THR211 LYS212 CYS213 GLY214 SER215 GLN216 ILE217 LEU218 ALA219 ASN220 VAL221 SER222 LEU223 ILE224 VAL225 VAL226 ALA227 GLY228 LYS229 TYR230 HIS231 ILE232 ILE233 ASN234 ASN235 LYS236 THR237 ASN238 PRO239 LYS240 ILE241 LYS242 SER243 PHE244 THR245 ILE246 LYS247 LEU248 LEU249 PHE250 ASN251 LYS252 ASN253 GLY254 VAL255 LEU256 LEU257 ASP258 ASN259 SER260 ASN261 LEU262 GLY263 LYS264 ALA265 TYR266 TRP267 ASN268 PHE269 ARG270 SER271 GLY272 ASN273 SER274 ASN275 VAL276 SER277 THR278 ALA279 TYR280 GLU281 LYS282 ALA283 ILE284 GLY285 PHE286 MET287 PRO288 ASN289 LEU290 VAL291 ALA292 TYR293 PRO294 LYS295 PRO296 SER297 ASN298 SER299 LYS300 LYS301 TYR302 ALA303 ARG304 ASP305 ILE306 VAL307 TYR308 GLY309 THR310 ILE311 TYR312 LEU313 GLY314 GLY315 LYS316 PRO317 ASP318 GLN319 PRO320 ALA321 VAL322 ILE323 LYS324 THR325 THR326 PHE327 ASN328 GLN329 GLU330 THR331 GLY332 CYS333 GLU334 TYR335 SER336 ILE337 THR338 PHE339 ASN340 PHE341 SER342 TRP343 SER344 LYS345 THR346 TYR347 GLU348 ASN349 VAL350 GLU351 PHE352 GLU353 THR354 THR355 SER356 PHE357 THR358 PHE359 SER360 TYR361 ILE362 ALA363 GLN364 GLU365
Unit 2 LYS180 TYR181 ASP182 THR183 ARG184 THR185 LEU186 TRP187 THR188 THR189 PRO190 ASP191 THR192 SER193 PRO194 ASN195 CYS196 THR197 ILE198 ALA199 GLN200 ASP201 LYS202 ASP203 SER204 LYS205 LEU206 THR207 LEU208 VAL209 LEU210 THR211 LYS212 CYS213 GLY214 SER215 GLN216 ILE217 LEU218 ALA219 ASN220 VAL221 SER222 LEU223 ILE224 VAL225 VAL226 ALA227 GLY228 LYS229 TYR230 HIS231 ILE232 ILE233 ASN234 ASN235 LYS236 THR237 ASN238 PRO239 LYS240 ILE241 LYS242 SER243 PHE244 THR245 ILE246 LYS247 LEU248 LEU249 PHE250 ASN251 LYS252 ASN253 GLY254 VAL255 LEU256 LEU257 ASP258 ASN259 SER260 ASN261 LEU262 GLY263 LYS264 ALA265 TYR266 TRP267 ASN268 PHE269 ARG270 SER271 GLY272 ASN273 SER274 ASN275 VAL276 SER277 THR278 ALA279 TYR280 GLU281 LYS282 ALA283 ILE284 GLY285 PHE286 MET287 PRO288 ASN289 LEU290 VAL291 ALA292 TYR293 PRO294 LYS295 PRO296 SER297 ASN298 SER299 LYS300 LYS301 TYR302 ALA303 ARG304 ASP305 ILE306 VAL307 TYR308 GLY309 THR310 ILE311 TYR312 LEU313 GLY314 GLY315 LYS316 PRO317 ASP318 GLN319 PRO320 ALA321 VAL322 ILE323 LYS324 THR325 THR326 PHE327 ASN328 GLN329 GLU330 THR331 GLY332 CYS333 GLU334 TYR335 SER336 ILE337 THR338 PHE339 ASN340 PHE341 SER342 TRP343 SER344 LYS345 THR346 TYR347 GLU348 ASN349 VAL350 GLU351 PHE352 GLU353 THR354 THR355 SER356 PHE357 THR358 PHE359 SER360 TYR361 ILE362 ALA363 GLN364 GLU365
Unit 3 ARG184 THR185 LEU186 TRP187 THR188 THR189 PRO190 ASP191 THR192 SER193 PRO194 ASN195 CYS196 THR197 ILE198 ALA199 GLN200 ASP201 LYS202 ASP203 SER204 LYS205 LEU206 THR207 LEU208 VAL209 LEU210 THR211 LYS212 CYS213 GLY214 SER215 GLN216 ILE217 LEU218 ALA219 ASN220 VAL221 SER222 LEU223 ILE224 VAL225 VAL226 ALA227 GLY228 LYS229 TYR230 HIS231 ILE232 ILE233 ASN234 ASN235 LYS236 THR237 ASN238 PRO239 LYS240 ILE241 LYS242 SER243 PHE244 THR245 ILE246 LYS247 LEU248 LEU249 PHE250 ASN251 LYS252 ASN253 GLY254 VAL255 LEU256 LEU257 ASP258 ASN259 SER260 ASN261 LEU262 GLY263 LYS264 ALA265 TYR266 TRP267 ASN268 PHE269 ARG270 SER271 GLY272 ASN273 SER274 ASN275 VAL276 SER277 THR278 ALA279 TYR280 GLU281 LYS282 ALA283 ILE284 GLY285 PHE286 MET287 PRO288 ASN289 LEU290 VAL291 ALA292 TYR293 PRO294 LYS295 PRO296 SER297 ASN298 SER299 LYS300 LYS301 TYR302 ALA303 ARG304 ASP305 ILE306 VAL307 TYR308 GLY309 THR310 ILE311 TYR312 LEU313 GLY314 GLY315 LYS316 PRO317 ASP318 GLN319 PRO320 ALA321 VAL322 ILE323 LYS324 THR325 THR326 PHE327 ASN328 GLN329 GLU330 THR331 GLY332 CYS333 GLU334 TYR335 SER336 ILE337 THR338 PHE339 ASN340 PHE341 SER342 TRP343 SER344 LYS345 THR346 TYR347 GLU348 ASN349 VAL350 GLU351 PHE352 GLU353 THR354 THR355 SER356 PHE357 THR358 PHE359 SER360 TYR361 ILE362 ALA363 GLN364 GLU365
Unit 4 TYR181 ASP182 THR183 ARG184 THR185 LEU186 TRP187 THR188 THR189 PRO190 ASP191 THR192 SER193 PRO194 ASN195 CYS196 THR197 ILE198 ALA199 GLN200 ASP201 LYS202 ASP203 SER204 LYS205 LEU206 THR207 LEU208 VAL209 LEU210 THR211 LYS212 CYS213 GLY214 SER215 GLN216 ILE217 LEU218 ALA219 ASN220 VAL221 SER222 LEU223 ILE224 VAL225 VAL226 ALA227 GLY228 LYS229 TYR230 HIS231 ILE232 ILE233 ASN234 ASN235 LYS236 THR237 ASN238 PRO239 LYS240 ILE241 LYS242 SER243 PHE244 THR245 ILE246 LYS247 LEU248 LEU249 PHE250 ASN251 LYS252 ASN253 GLY254 VAL255 LEU256 LEU257 ASP258 ASN259 SER260 ASN261 LEU262 GLY263 LYS264 ALA265 TYR266 TRP267 ASN268 PHE269 ARG270 SER271 GLY272 ASN273 SER274 ASN275 VAL276 SER277 THR278 ALA279 TYR280 GLU281 LYS282 ALA283 ILE284 GLY285 PHE286 MET287 PRO288 ASN289 LEU290 VAL291 ALA292 TYR293 PRO294 LYS295 PRO296 SER297 ASN298 SER299 LYS300 LYS301 TYR302 ALA303 ARG304 ASP305 ILE306 VAL307 TYR308 GLY309 THR310 ILE311 TYR312 LEU313 GLY314 GLY315 LYS316 PRO317 ASP318 GLN319 PRO320 ALA321 VAL322 ILE323 LYS324 THR325 THR326 PHE327 ASN328 GLN329 GLU330 THR331 GLY332 CYS333 GLU334 TYR335 SER336 ILE337 THR338 PHE339 ASN340 PHE341 SER342 TRP343 SER344 LYS345 THR346 TYR347 GLU348 ASN349 VAL350 GLU351 PHE352 GLU353 THR354 THR355 SER356 PHE357 THR358 PHE359 SER360 TYR361 ILE362 ALA363 GLN364 GLU365
Unit 5 LYS180 TYR181 ASP182 THR183 ARG184 THR185 LEU186 TRP187 THR188 THR189 PRO190 ASP191 THR192 SER193 PRO194 ASN195 CYS196 THR197 ILE198 ALA199 GLN200 ASP201 LYS202 ASP203 SER204 LYS205 LEU206 THR207 LEU208 VAL209 LEU210 THR211 LYS212 CYS213 GLY214 SER215 GLN216 ILE217 LEU218 ALA219 ASN220 VAL221 SER222 LEU223 ILE224 VAL225 VAL226 ALA227 GLY228 LYS229 TYR230 HIS231 ILE232 ILE233 ASN234 ASN235 LYS236 THR237 ASN238 PRO239 LYS240 ILE241 LYS242 SER243 PHE244 THR245 ILE246 LYS247 LEU248 LEU249 PHE250 ASN251 LYS252 ASN253 GLY254 VAL255 LEU256 LEU257 ASP258 ASN259 SER260 ASN261 LEU262 GLY263 LYS264 ALA265 TYR266 TRP267 ASN268 PHE269 ARG270 SER271 GLY272 ASN273 SER274 ASN275 VAL276 SER277 THR278 ALA279 TYR280 GLU281 LYS282 ALA283 ILE284 GLY285 PHE286 MET287 PRO288 ASN289 LEU290 VAL291 ALA292 TYR293 PRO294 LYS295 PRO296 SER297 ASN298 SER299 LYS300 LYS301 TYR302 ALA303 ARG304 ASP305 ILE306 VAL307 TYR308 GLY309 THR310 ILE311 TYR312 LEU313 GLY314 GLY315 LYS316 PRO317 ASP318 GLN319 PRO320 ALA321 VAL322 ILE323 LYS324 THR325 THR326 PHE327 ASN328 GLN329 GLU330 THR331 GLY332 CYS333 GLU334 TYR335 SER336 ILE337 THR338 PHE339 ASN340 PHE341 SER342 TRP343 SER344 LYS345 THR346 TYR347 GLU348 ASN349 VAL350 GLU351 PHE352 GLU353 THR354 THR355 SER356 PHE357 THR358 PHE359 SER360 TYR361 ILE362 ALA363 GLN364 GLU365
Unit 6 TYR181 ASP182 THR183 ARG184 THR185 LEU186 TRP187 THR188 THR189 PRO190 ASP191 THR192 SER193 PRO194 ASN195 CYS196 THR197 ILE198 ALA199 GLN200 ASP201 LYS202 ASP203 SER204 LYS205 LEU206 THR207 LEU208 VAL209 LEU210 THR211 LYS212 CYS213 GLY214 SER215 GLN216 ILE217 LEU218 ALA219 ASN220 VAL221 SER222 LEU223 ILE224 VAL225 VAL226 ALA227 GLY228 LYS229 TYR230 HIS231 ILE232 ILE233 ASN234 ASN235 LYS236 THR237 ASN238 PRO239 LYS240 ILE241 LYS242 SER243 PHE244 THR245 ILE246 LYS247 LEU248 LEU249 PHE250 ASN251 LYS252 ASN253 GLY254 VAL255 LEU256 LEU257 ASP258 ASN259 SER260 ASN261 LEU262 GLY263 LYS264 ALA265 TYR266 TRP267 ASN268 PHE269 ARG270 SER271 GLY272 ASN273 SER274 ASN275 VAL276 SER277 THR278 ALA279 TYR280 GLU281 LYS282 ALA283 ILE284 GLY285 PHE286 MET287 PRO288 ASN289 LEU290 VAL291 ALA292 TYR293 PRO294 LYS295 PRO296 SER297 ASN298 SER299 LYS300 LYS301 TYR302 ALA303 ARG304 ASP305 ILE306 VAL307 TYR308 GLY309 THR310 ILE311 TYR312 LEU313 GLY314 GLY315 LYS316 PRO317 ASP318 GLN319 PRO320 ALA321 VAL322 ILE323 LYS324 THR325 THR326 PHE327 ASN328 GLN329 GLU330 THR331 GLY332 CYS333 GLU334 TYR335 SER336 ILE337 THR338 PHE339 ASN340 PHE341 SER342 TRP343 SER344 LYS345 THR346 TYR347 GLU348 ASN349 VAL350 GLU351 PHE352 GLU353 THR354 THR355 SER356 PHE357 THR358 PHE359 SER360 TYR361 ILE362 ALA363 GLN364 GLU365
Ligands
Unit 7 SIA401 ZN402 ZN403 ZN404 ACT405 ACT406 EDO407 EDO408 CL409
Unit 8 SIA401 1P0402 ZN403 ZN404 ZN405 ACT406 ACT407 EDO408 EDO409 EDO410 MG411
Unit 9 SIA401 ZN402 EDO403 MG404 MG405
Unit 10 ZN401 ZN402 SIA403 ACT404 ACT405 ACT406 EDO407 EDO408 EDO409 EDO410 GOL411 MG412
Unit 11 ZN401 ZN402 SIA403 ACT404 EDO405 EDO406 EDO407 MG408 MG409
Unit 12 ZN401 ZN402 ZN403 SIA404 ACT405 GOL406 GOL407 CA408
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany