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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE FULL-LENGTH JAPANESE ENCEPHALITIS V
Keywords METHYLTRANSFERASE, RNA-DEPENDENT RNA POLYMERASE, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4K6M     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   POLYPROTEIN  A 888 7135 0
2  Protein   POLYPROTEIN  B 888 7135 0
3  Ligand   POLYPROTEIN  A 13 0 78
4  Ligand   POLYPROTEIN  B 11 0 68
5 Water     342 0 342
total       2142 14270 488
Proteins
Unit 1 GLY5 ARG6 THR7 LEU8 GLY9 GLU10 GLN11 TRP12 LYS13 GLU14 LYS15 LEU16 ASN17 ALA18 MET19 SER20 ARG21 GLU22 GLU23 PHE24 PHE25 LYS26 TYR27 ARG28 ARG29 GLU30 ALA31 ILE32 ILE33 GLU34 VAL35 ASP36 ARG37 THR38 GLU39 ALA40 ARG41 ARG42 ALA43 ARG44 ARG45 GLU46 ASN47 ASN48 ILE49 VAL50 GLY51 GLY52 HIS53 PRO54 VAL55 SER56 ARG57 GLY58 SER59 ALA60 LYS61 LEU62 ARG63 TRP64 LEU65 VAL66 GLU67 LYS68 GLY69 PHE70 VAL71 SER72 PRO73 ILE74 GLY75 LYS76 VAL77 ILE78 ASP79 LEU80 GLY81 CYS82 GLY83 ARG84 GLY85 GLY86 TRP87 SER88 TYR89 TYR90 ALA91 ALA92 THR93 LEU94 LYS95 LYS96 VAL97 GLN98 GLU99 VAL100 ARG101 GLY102 TYR103 THR104 LYS105 GLY106 GLY107 ALA108 GLY109 HIS110 GLU111 GLU112 PRO113 MET114 LEU115 MET116 GLN117 SER118 TYR119 GLY120 TRP121 ASN122 LEU123 VAL124 SER125 LEU126 LYS127 SER128 GLY129 VAL130 ASP131 VAL132 PHE133 TYR134 LYS135 PRO136 SER137 GLU138 PRO139 SER140 ASP141 THR142 LEU143 PHE144 CYS145 ASP146 ILE147 GLY148 GLU149 SER150 SER151 PRO152 SER153 PRO154 GLU155 VAL156 GLU157 GLU158 GLN159 ARG160 THR161 LEU162 ARG163 VAL164 LEU165 GLU166 MET167 THR168 SER169 ASP170 TRP171 LEU172 HIS173 ARG174 GLY175 PRO176 ARG177 GLU178 PHE179 CYS180 ILE181 LYS182 VAL183 LEU184 CYS185 PRO186 TYR187 MET188 PRO189 LYS190 VAL191 ILE192 GLU193 LYS194 MET195 GLU196 VAL197 LEU198 GLN199 ARG200 ARG201 PHE202 GLY203 GLY204 GLY205 LEU206 VAL207 ARG208 LEU209 PRO210 LEU211 SER212 ARG213 ASN214 SER215 ASN216 HIS217 GLU218 MET219 TYR220 TRP221 VAL222 SER223 GLY224 ALA225 ALA226 GLY227 ASN228 VAL229 VAL230 HIS231 ALA232 VAL233 ASN234 MET235 THR236 SER237 GLN238 VAL239 LEU240 LEU241 GLY242 ARG243 MET244 ASP245 ARG246 THR247 VAL248 TRP249 ARG250 GLY251 PRO252 LYS253 TYR254 GLU255 GLU256 ASP257 VAL258 ASN259 LEU260 GLY261 SER262 GLY263 THR264 ARG265 ALA266 VAL267 GLY268 LYS269 GLY270 SER274 ASN275 GLN276 GLU277 LYS278 ILE279 LYS280 LYS281 ARG282 ILE283 GLN284 LYS285 LEU286 LYS287 GLU288 GLU289 PHE290 ALA291 THR292 THR293 TRP294 HIS295 LYS296 ASP297 PRO298 GLU299 HIS300 PRO301 TYR302 ARG303 THR304 TRP305 THR306 TYR307 HIS308 GLY309 SER310 TYR311 GLU312 VAL313 LYS314 ALA315 THR316 GLY317 SER318 ALA319 SER320 SER321 LEU322 VAL323 ASN324 GLY325 VAL326 VAL327 LYS328 LEU329 MET330 SER331 LYS332 PRO333 TRP334 ASP335 ALA336 ILE337 ALA338 ASN339 VAL340 THR341 THR342 MET343 ALA344 MET345 THR346 ASP347 THR348 THR349 PRO350 PHE351 GLY352 GLN353 GLN354 ARG355 VAL356 PHE357 LYS358 GLU359 LYS360 VAL361 ASP362 THR363 LYS364 ALA365 PRO366 GLU367 PRO368 PRO369 ALA370 GLY371 ALA372 LYS373 GLU374 VAL375 LEU376 ASN377 GLU378 THR379 THR380 ASN381 TRP382 LEU383 TRP384 ALA385 TYR386 LEU387 SER388 ARG389 GLU390 LYS391 ARG392 PRO393 ARG394 LEU395 CYS396 THR397 LYS398 GLU399 GLU400 PHE401 ILE402 LYS403 LYS404 VAL405 ASN406 SER407 ASN408 ALA409 ALA410 LEU411 GLY412 ALA413 VAL414 PHE415 ALA416 GLU417 GLN418 ASN419 GLN420 TRP421 SER422 THR423 ALA424 ARG425 GLU426 ALA427 VAL428 ASP429 ASP430 PRO431 ARG432 PHE433 TRP434 GLU435 MET436 VAL437 ASP438 GLU439 GLU440 ARG441 GLU442 ASN443 HIS444 LEU445 ARG446 GLY447 GLU448 CYS449 HIS450 THR451 CYS452 ILE453 TYR454 ASN455 MET456 MET457 GLY458 LYS459 ARG460 GLU461 LYS462 LYS463 PRO464 GLY465 GLU466 PHE467 GLY468 LYS469 ALA470 LYS471 GLY472 SER473 ARG474 ALA475 ILE476 TRP477 PHE478 MET479 TRP480 LEU481 GLY482 ALA483 ARG484 TYR485 LEU486 GLU487 PHE488 GLU489 ALA490 LEU491 GLY492 PHE493 LEU494 ASN495 GLU496 ASP497 HIS498 TRP499 LEU500 SER501 ARG502 GLU503 ASN504 SER505 GLY506 GLY507 GLY508 VAL509 GLU510 GLY511 SER512 GLY513 VAL514 GLN515 LYS516 LEU517 GLY518 TYR519 ILE520 LEU521 ARG522 ASP523 ILE524 ALA525 GLY526 LYS527 GLN528 GLY529 GLY530 LYS531 MET532 TYR533 ALA534 ASP535 ASP536 THR537 ALA538 GLY539 TRP540 ASP541 THR542 ARG543 ILE544 THR545 ARG546 THR547 ASP548 LEU549 GLU550 ASN551 GLU552 ALA553 LYS554 VAL555 LEU556 GLU557 LEU558 LEU559 ASP560 GLY561 GLU562 HIS563 ARG564 MET565 LEU566 ALA567 ARG568 ALA569 ILE570 ILE571 GLU572 LEU573 THR574 TYR575 ARG576 HIS577 LYS578 VAL579 VAL580 LYS581 VAL582 MET583 ARG584 PRO585 ALA586 ALA587 GLU588 GLY589 LYS590 THR591 VAL592 MET593 ASP594 VAL595 ILE596 SER597 ARG598 GLU599 ASP600 GLN601 ARG602 GLY603 SER604 GLY605 GLN606 VAL607 VAL608 THR609 TYR610 ALA611 LEU612 ASN613 THR614 PHE615 THR616 ASN617 ILE618 ALA619 VAL620 GLN621 LEU622 VAL623 ARG624 LEU625 MET626 GLU627 ALA628 GLU629 GLY630 VAL631 ILE632 GLY633 PRO634 GLN635 HIS636 LEU637 GLU638 GLN639 LEU640 PRO641 ARG642 LYS643 ASN644 LYS645 ILE646 ALA647 VAL648 ARG649 THR650 TRP651 LEU652 PHE653 GLU654 ASN655 GLY656 GLU657 GLU658 ARG659 VAL660 THR661 ARG662 MET663 ALA664 ILE665 SER666 GLY667 ASP668 ASP669 CYS670 VAL671 VAL672 LYS673 PRO674 LEU675 ASP676 ASP677 ARG678 PHE679 ALA680 THR681 ALA682 LEU683 HIS684 PHE685 LEU686 ASN687 ALA688 MET689 SER690 LYS691 VAL692 ARG693 LYS694 ASP695 ILE696 GLN697 GLU698 TRP699 LYS700 PRO701 SER702 HIS703 GLY704 TRP705 HIS706 ASP707 TRP708 GLN709 GLN710 VAL711 PRO712 PHE713 CYS714 SER715 ASN716 HIS717 PHE718 GLN719 GLU720 ILE721 VAL722 MET723 LYS724 ASP725 GLY726 ARG727 SER728 ILE729 VAL730 VAL731 PRO732 CYS733 ARG734 GLY735 GLN736 ASP737 GLU738 LEU739 ILE740 GLY741 ARG742 ALA743 ARG744 ILE745 SER746 PRO747 GLY748 ALA749 GLY750 TRP751 ASN752 VAL753 LYS754 ASP755 THR756 ALA757 CYS758 LEU759 ALA760 LYS761 ALA762 TYR763 ALA764 GLN765 MET766 TRP767 LEU768 LEU769 LEU770 TYR771 PHE772 HIS773 ARG774 ARG775 ASP776 LEU777 ARG778 LEU779 MET780 ALA781 ASN782 ALA783 ILE784 CYS785 SER786 ALA787 VAL788 PRO789 VAL790 ASP791 TRP792 VAL793 PRO794 THR795 GLY796 ARG797 THR798 SER799 TRP800 SER801 ILE802 HIS803 SER804 LYS805 GLY806 GLU807 TRP808 MET809 THR810 THR811 GLU812 ASP813 MET814 LEU815 GLN816 VAL817 TRP818 ASN819 ARG820 VAL821 TRP822 ILE823 GLU824 GLU825 ASN826 GLU827 TRP828 MET829 MET830 ASP831 LYS832 THR833 PRO834 ILE835 THR836 SER837 TRP838 THR839 ASP840 VAL841 PRO842 TYR843 VAL844 GLY845 LYS846 ARG847 GLU848 ASP849 ILE850 TRP851 CYS852 GLY853 SER854 LEU855 ILE856 GLY857 THR858 ARG859 SER860 ARG861 ALA862 THR863 TRP864 ALA865 GLU866 ASN867 ILE868 TYR869 ALA870 ALA871 ILE872 ASN873 GLN874 VAL875 ARG876 ALA877 VAL878 ILE879 GLY880 LYS881 GLU882 ASN883 TYR884 VAL885 ASP886 TYR887 MET888 THR889 SER890 LEU891 ARG892 ARG893 TYR894 GLU895
Unit 2 GLY5 ARG6 THR7 LEU8 GLY9 GLU10 GLN11 TRP12 LYS13 GLU14 LYS15 LEU16 ASN17 ALA18 MET19 SER20 ARG21 GLU22 GLU23 PHE24 PHE25 LYS26 TYR27 ARG28 ARG29 GLU30 ALA31 ILE32 ILE33 GLU34 VAL35 ASP36 ARG37 THR38 GLU39 ALA40 ARG41 ARG42 ALA43 ARG44 ARG45 GLU46 ASN47 ASN48 ILE49 VAL50 GLY51 GLY52 HIS53 PRO54 VAL55 SER56 ARG57 GLY58 SER59 ALA60 LYS61 LEU62 ARG63 TRP64 LEU65 VAL66 GLU67 LYS68 GLY69 PHE70 VAL71 SER72 PRO73 ILE74 GLY75 LYS76 VAL77 ILE78 ASP79 LEU80 GLY81 CYS82 GLY83 ARG84 GLY85 GLY86 TRP87 SER88 TYR89 TYR90 ALA91 ALA92 THR93 LEU94 LYS95 LYS96 VAL97 GLN98 GLU99 VAL100 ARG101 GLY102 TYR103 THR104 LYS105 GLY106 GLY107 ALA108 GLY109 HIS110 GLU111 GLU112 PRO113 MET114 LEU115 MET116 GLN117 SER118 TYR119 GLY120 TRP121 ASN122 LEU123 VAL124 SER125 LEU126 LYS127 SER128 GLY129 VAL130 ASP131 VAL132 PHE133 TYR134 LYS135 PRO136 SER137 GLU138 PRO139 SER140 ASP141 THR142 LEU143 PHE144 CYS145 ASP146 ILE147 GLY148 GLU149 SER150 SER151 PRO152 SER153 PRO154 GLU155 VAL156 GLU157 GLU158 GLN159 ARG160 THR161 LEU162 ARG163 VAL164 LEU165 GLU166 MET167 THR168 SER169 ASP170 TRP171 LEU172 HIS173 ARG174 GLY175 PRO176 ARG177 GLU178 PHE179 CYS180 ILE181 LYS182 VAL183 LEU184 CYS185 PRO186 TYR187 MET188 PRO189 LYS190 VAL191 ILE192 GLU193 LYS194 MET195 GLU196 VAL197 LEU198 GLN199 ARG200 ARG201 PHE202 GLY203 GLY204 GLY205 LEU206 VAL207 ARG208 LEU209 PRO210 LEU211 SER212 ARG213 ASN214 SER215 ASN216 HIS217 GLU218 MET219 TYR220 TRP221 VAL222 SER223 GLY224 ALA225 ALA226 GLY227 ASN228 VAL229 VAL230 HIS231 ALA232 VAL233 ASN234 MET235 THR236 SER237 GLN238 VAL239 LEU240 LEU241 GLY242 ARG243 MET244 ASP245 ARG246 THR247 VAL248 TRP249 ARG250 GLY251 PRO252 LYS253 TYR254 GLU255 GLU256 ASP257 VAL258 ASN259 LEU260 GLY261 SER262 GLY263 THR264 ARG265 ALA266 VAL267 GLY268 LYS269 GLY270 SER274 ASN275 GLN276 GLU277 LYS278 ILE279 LYS280 LYS281 ARG282 ILE283 GLN284 LYS285 LEU286 LYS287 GLU288 GLU289 PHE290 ALA291 THR292 THR293 TRP294 HIS295 LYS296 ASP297 PRO298 GLU299 HIS300 PRO301 TYR302 ARG303 THR304 TRP305 THR306 TYR307 HIS308 GLY309 SER310 TYR311 GLU312 VAL313 LYS314 ALA315 THR316 GLY317 SER318 ALA319 SER320 SER321 LEU322 VAL323 ASN324 GLY325 VAL326 VAL327 LYS328 LEU329 MET330 SER331 LYS332 PRO333 TRP334 ASP335 ALA336 ILE337 ALA338 ASN339 VAL340 THR341 THR342 MET343 ALA344 MET345 THR346 ASP347 THR348 THR349 PRO350 PHE351 GLY352 GLN353 GLN354 ARG355 VAL356 PHE357 LYS358 GLU359 LYS360 VAL361 ASP362 THR363 LYS364 ALA365 PRO366 GLU367 PRO368 PRO369 ALA370 GLY371 ALA372 LYS373 GLU374 VAL375 LEU376 ASN377 GLU378 THR379 THR380 ASN381 TRP382 LEU383 TRP384 ALA385 TYR386 LEU387 SER388 ARG389 GLU390 LYS391 ARG392 PRO393 ARG394 LEU395 CYS396 THR397 LYS398 GLU399 GLU400 PHE401 ILE402 LYS403 LYS404 VAL405 ASN406 SER407 ASN408 ALA409 ALA410 LEU411 GLY412 ALA413 VAL414 PHE415 ALA416 GLU417 GLN418 ASN419 GLN420 TRP421 SER422 THR423 ALA424 ARG425 GLU426 ALA427 VAL428 ASP429 ASP430 PRO431 ARG432 PHE433 TRP434 GLU435 MET436 VAL437 ASP438 GLU439 GLU440 ARG441 GLU442 ASN443 HIS444 LEU445 ARG446 GLY447 GLU448 CYS449 HIS450 THR451 CYS452 ILE453 TYR454 ASN455 MET456 MET457 GLY458 LYS459 ARG460 GLU461 LYS462 LYS463 PRO464 GLY465 GLU466 PHE467 GLY468 LYS469 ALA470 LYS471 GLY472 SER473 ARG474 ALA475 ILE476 TRP477 PHE478 MET479 TRP480 LEU481 GLY482 ALA483 ARG484 TYR485 LEU486 GLU487 PHE488 GLU489 ALA490 LEU491 GLY492 PHE493 LEU494 ASN495 GLU496 ASP497 HIS498 TRP499 LEU500 SER501 ARG502 GLU503 ASN504 SER505 GLY506 GLY507 GLY508 VAL509 GLU510 GLY511 SER512 GLY513 VAL514 GLN515 LYS516 LEU517 GLY518 TYR519 ILE520 LEU521 ARG522 ASP523 ILE524 ALA525 GLY526 LYS527 GLN528 GLY529 GLY530 LYS531 MET532 TYR533 ALA534 ASP535 ASP536 THR537 ALA538 GLY539 TRP540 ASP541 THR542 ARG543 ILE544 THR545 ARG546 THR547 ASP548 LEU549 GLU550 ASN551 GLU552 ALA553 LYS554 VAL555 LEU556 GLU557 LEU558 LEU559 ASP560 GLY561 GLU562 HIS563 ARG564 MET565 LEU566 ALA567 ARG568 ALA569 ILE570 ILE571 GLU572 LEU573 THR574 TYR575 ARG576 HIS577 LYS578 VAL579 VAL580 LYS581 VAL582 MET583 ARG584 PRO585 ALA586 ALA587 GLU588 GLY589 LYS590 THR591 VAL592 MET593 ASP594 VAL595 ILE596 SER597 ARG598 GLU599 ASP600 GLN601 ARG602 GLY603 SER604 GLY605 GLN606 VAL607 VAL608 THR609 TYR610 ALA611 LEU612 ASN613 THR614 PHE615 THR616 ASN617 ILE618 ALA619 VAL620 GLN621 LEU622 VAL623 ARG624 LEU625 MET626 GLU627 ALA628 GLU629 GLY630 VAL631 ILE632 GLY633 PRO634 GLN635 HIS636 LEU637 GLU638 GLN639 LEU640 PRO641 ARG642 LYS643 ASN644 LYS645 ILE646 ALA647 VAL648 ARG649 THR650 TRP651 LEU652 PHE653 GLU654 ASN655 GLY656 GLU657 GLU658 ARG659 VAL660 THR661 ARG662 MET663 ALA664 ILE665 SER666 GLY667 ASP668 ASP669 CYS670 VAL671 VAL672 LYS673 PRO674 LEU675 ASP676 ASP677 ARG678 PHE679 ALA680 THR681 ALA682 LEU683 HIS684 PHE685 LEU686 ASN687 ALA688 MET689 SER690 LYS691 VAL692 ARG693 LYS694 ASP695 ILE696 GLN697 GLU698 TRP699 LYS700 PRO701 SER702 HIS703 GLY704 TRP705 HIS706 ASP707 TRP708 GLN709 GLN710 VAL711 PRO712 PHE713 CYS714 SER715 ASN716 HIS717 PHE718 GLN719 GLU720 ILE721 VAL722 MET723 LYS724 ASP725 GLY726 ARG727 SER728 ILE729 VAL730 VAL731 PRO732 CYS733 ARG734 GLY735 GLN736 ASP737 GLU738 LEU739 ILE740 GLY741 ARG742 ALA743 ARG744 ILE745 SER746 PRO747 GLY748 ALA749 GLY750 TRP751 ASN752 VAL753 LYS754 ASP755 THR756 ALA757 CYS758 LEU759 ALA760 LYS761 ALA762 TYR763 ALA764 GLN765 MET766 TRP767 LEU768 LEU769 LEU770 TYR771 PHE772 HIS773 ARG774 ARG775 ASP776 LEU777 ARG778 LEU779 MET780 ALA781 ASN782 ALA783 ILE784 CYS785 SER786 ALA787 VAL788 PRO789 VAL790 ASP791 TRP792 VAL793 PRO794 THR795 GLY796 ARG797 THR798 SER799 TRP800 SER801 ILE802 HIS803 SER804 LYS805 GLY806 GLU807 TRP808 MET809 THR810 THR811 GLU812 ASP813 MET814 LEU815 GLN816 VAL817 TRP818 ASN819 ARG820 VAL821 TRP822 ILE823 GLU824 GLU825 ASN826 GLU827 TRP828 MET829 MET830 ASP831 LYS832 THR833 PRO834 ILE835 THR836 SER837 TRP838 THR839 ASP840 VAL841 PRO842 TYR843 VAL844 GLY845 LYS846 ARG847 GLU848 ASP849 ILE850 TRP851 CYS852 GLY853 SER854 LEU855 ILE856 GLY857 THR858 ARG859 SER860 ARG861 ALA862 THR863 TRP864 ALA865 GLU866 ASN867 ILE868 TYR869 ALA870 ALA871 ILE872 ASN873 GLN874 VAL875 ARG876 ALA877 VAL878 ILE879 GLY880 LYS881 GLU882 ASN883 TYR884 VAL885 ASP886 TYR887 MET888 THR889 SER890 LEU891 ARG892 ARG893 TYR894 GLU895
Ligands
Unit 3 SAH1001 SO41002 SO41003 SO41004 SO41005 SO41006 SO41007 SO41008 SO41009 SO41010 SO41011 ZN1012 ZN1013
Unit 4 SAH1001 SO41002 SO41003 SO41004 SO41005 SO41006 SO41007 SO41008 SO41009 ZN1010 ZN1011
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany