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Title | CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS PYROPHOSPHOHYDROL BOUND TO A NON-HYDROLYSABLE TRIPHOSPHORYLATED DINUCLEOTIDE PGPG) - FIRST GUANOSINE RESIDUE IN GUANOSINE BINDING POCKET | |
Keywords | NUDIX HYDROLASE, RNA PYROPHOSPHOHYDROLASE, RPPH, CYTOSOL, HY HYDROLASE-RNA COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 4JZU | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | RNA PYROPHOSPHOHYDROLASE | A | 157 | 1298 | 0 |
2 | Protein | RNA PYROPHOSPHOHYDROLASE | B | 151 | 1252 | 0 |
3 | DNA | C | 2 | 4 | 32 | |
4 | Ligand | RNA PYROPHOSPHOHYDROLASE | B | 1 | 0 | 15 |
5 | Water | 219 | 0 | 219 | ||
total | 530 | 2554 | 266 |
Unit 1 | MET1 TYR2 GLU3 PHE4 LYS5 ASP6 TYR7 TYR8 GLN9 ASN10 THR11 VAL12 GLN13 LEU14 SER15 PHE16 ASP17 ASP18 GLN19 PRO20 PHE21 SER22 ASP23 SER24 PRO25 LYS26 HIS27 VAL28 TRP29 VAL30 ILE31 CYS32 ARG33 PHE34 GLY35 GLY36 LYS37 TRP38 LEU39 LEU40 THR41 GLU42 HIS43 GLU44 ASP45 ARG46 GLY47 TYR48 GLU49 PHE50 PRO51 GLY52 GLY53 LYS54 VAL55 GLU56 PRO57 MET58 GLU59 CYS60 ALA61 GLU62 GLU63 ALA64 ALA65 LEU66 ARG67 GLU68 VAL69 LYS70 GLU71 GLU72 THR73 GLY74 ALA75 ARG76 VAL77 LYS78 SER79 LEU80 LYS81 TYR82 LEU83 GLY84 GLN85 TYR86 LYS87 VAL88 LEU89 GLY90 LYS91 GLU92 LYS93 VAL94 ILE95 VAL96 LYS97 ASN98 ILE99 TYR100 PHE101 ALA102 ASP103 ILE104 GLU105 LYS106 LEU107 GLU108 LYS109 GLN110 ALA111 ASP112 TYR113 PHE114 GLU115 THR116 LYS117 GLY118 PRO119 VAL120 LEU121 PHE122 HIS123 GLU124 LEU125 PRO126 GLU127 ASN128 LEU129 SER130 ARG131 ASN132 LYS133 LYS134 PHE135 SER136 PHE137 ILE138 MET139 LYS140 ASP141 SER142 VAL143 LEU144 PRO145 ILE146 SER147 LEU148 LYS149 LYS150 LEU151 LYS152 GLU153 SER154 GLY155 TRP156 ILE157 |
Unit 2 | MET1 TYR2 GLU3 PHE4 LYS5 ASP6 TYR7 TYR8 GLN9 ASN10 THR11 VAL12 GLN13 LEU14 SER15 PHE16 ASP17 ASP18 GLN19 PRO20 PHE21 SER22 ASP23 SER24 PRO25 LYS26 HIS27 VAL28 TRP29 VAL30 ILE31 CYS32 ARG33 PHE34 GLY35 GLY36 LYS37 TRP38 LEU39 LEU40 THR41 GLU42 HIS43 GLU44 ASP45 ARG46 GLY47 TYR48 GLU49 PHE50 PRO51 GLY52 GLY53 LYS54 VAL55 GLU56 PRO57 MET58 GLU59 CYS60 ALA61 GLU62 GLU63 ALA64 ALA65 LEU66 ARG67 GLU68 VAL69 LYS70 GLU71 GLU72 THR73 GLY74 ALA75 ARG76 VAL77 LYS78 SER79 LEU80 LYS81 TYR82 LEU83 GLY84 GLN85 TYR86 LYS87 VAL88 LEU89 ILE95 VAL96 LYS97 ASN98 ILE99 TYR100 PHE101 ALA102 ASP103 ILE104 GLU105 LYS106 LEU107 GLU108 LYS109 GLN110 ALA111 ASP112 TYR113 PHE114 GLU115 THR116 LYS117 GLY118 PRO119 VAL120 LEU121 PHE122 HIS123 GLU124 LEU125 PRO126 GLU127 ASN128 LEU129 SER130 ARG131 ASN132 LYS133 LYS134 PHE135 SER136 PHE137 ILE138 MET139 LYS140 ASP141 SER142 VAL143 LEU144 PRO145 ILE146 SER147 LEU148 LYS149 LYS150 LEU151 LYS152 GLU153 SER154 GLY155 TRP156 |
Unit 3 | GCP1 G2 |
Unit 4 | EPE201 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |