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Sequence, Chains, Asymmetric and Biological Units

Title THREE DIMENSIONAL STRUCTURE OF BROADLY NEUTRALIZING HUMAN AN HEPATITIS C VIRUS (HCV) GLYCOPROTEIN E2 FAB FRAGMENT HC84-2
Keywords FAB FRAGMENT, IMMUNGLOBULIN FOLD, ANTIBODY, IMMUNE SYSTEM-VI PROTEIN COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4JZO     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ANTI-HCV E2 FAB HC84-27 HEAVY CHAIN  A 215 1600 0
2  Protein   ANTI-HCV E2 FAB HC84-27 LIGHT CHAIN  B 211 1607 0
3  Protein   ANTI-HCV E2 FAB HC84-27 HEAVY CHAIN  C 214 1591 0
4  Protein   ANTI-HCV E2 FAB HC84-27 HEAVY CHAIN  D 214 1594 0
5  Protein   ANTI-HCV E2 FAB HC84-27 LIGHT CHAIN  E 211 1607 0
6  Protein   ANTI-HCV E2 FAB HC84-27 LIGHT CHAIN  F 210 1601 0
7  Protein   ANTI-HCV E2 FAB HC84-27 HEAVY CHAIN  G 217 1612 0
8  Protein   ANTI-HCV E2 FAB HC84-27 LIGHT CHAIN  H 210 1601 0
9  Protein   ENVELOPE GLYCOPROTEIN E2  I 11 94 0
10  Protein   ENVELOPE GLYCOPROTEIN E2  J 11 94 0
11  Protein   ENVELOPE GLYCOPROTEIN E2  K 11 94 0
12  Protein   ENVELOPE GLYCOPROTEIN E2  L 11 94 0
13 Water     301 0 301
total       2047 13189 301

Proteins
Unit 1 GLN1 VAL2 THR3 LEU4 LYS5 GLU6 SER7 GLY8 ALA9 GLU10 VAL11 LYS12 LYS13 PRO14 GLY15 SER16 SER17 VAL18 LYS19 VAL20 SER21 CYS22 GLU23 ALA24 SER25 GLY26 GLY27 THR28 LEU29 SER30 ASN31 TYR32 VAL33 ILE34 THR35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 GLN43 GLY44 LEU45 GLU46 TRP47 MET48 GLY49 GLY50 PHE51 ILE52 PRO53 THR54 PHE55 ARG56 THR57 ALA58 MET59 TYR60 ALA61 GLN62 GLY63 PHE64 GLN65 GLY66 ARG67 VAL68 THR69 ILE70 THR71 ALA72 ASP73 GLU74 SER75 THR76 SER77 ILE78 ALA79 TYR80 MET81 GLU82 LEU83 THR84 ASN85 LEU86 ARG87 SER88 GLU89 ASP90 THR91 ALA92 VAL93 TYR94 TYR95 CYS96 ALA97 ARG98 GLY99 PRO100 LEU101 SER102 ARG103 GLY104 TYR105 TYR106 ASP107 TYR108 TRP109 GLY110 GLN111 GLY112 THR113 LEU114 VAL115 THR116 VAL117 SER118 SER119 ALA120 SER121 THR122 LYS123 GLY124 PRO125 SER126 VAL127 PHE128 PRO129 LEU130 ALA131 PRO132 SER133 SER138 GLY139 GLY140 THR141 ALA142 ALA143 LEU144 GLY145 CYS146 LEU147 VAL148 LYS149 ASP150 TYR151 PHE152 PRO153 GLU154 PRO155 VAL156 THR157 VAL158 SER159 TRP160 ASN161 SER162 GLY163 ALA164 LEU165 THR166 SER167 GLY168 VAL169 HIS170 THR171 PHE172 PRO173 ALA174 VAL175 LEU176 GLN177 SER178 SER179 GLY180 LEU181 TYR182 SER183 LEU184 SER185 SER186 VAL187 VAL188 THR189 VAL190 PRO191 SER192 SER193 SER194 LEU195 GLY196 THR197 GLN198 THR199 TYR200 ILE201 CYS202 ASN203 VAL204 ASN205 HIS206 LYS207 PRO208 SER209 ASN210 THR211 LYS212 VAL213 ASP214 LYS215 LYS216 ALA217 GLU218 PRO219
Unit 2 SER1 TYR2 VAL3 LEU4 THR5 GLN6 PRO7 PRO8 SER9 VAL10 SER11 VAL12 SER13 PRO14 GLY15 GLN16 THR17 ALA18 ARG19 ILE20 THR21 CYS22 SER23 GLY24 ASP25 LYS26 LEU27 GLY28 ASP29 LYS30 TYR31 ALA32 SER33 TRP34 TYR35 GLN36 GLN37 LYS38 PRO39 GLY40 GLN41 SER42 PRO43 VAL44 LEU45 VAL46 ILE47 TYR48 GLN49 ASP50 ASN51 LYS52 ARG53 PRO54 SER55 GLU56 ILE57 PRO58 ALA59 ARG60 PHE61 SER62 GLY63 SER64 ASN65 SER66 GLY67 ASN68 THR69 ALA70 THR71 LEU72 THR73 ILE74 SER75 GLY76 ALA77 GLN78 ALA79 MET80 ASP81 GLU82 ALA83 ASP84 TYR85 TYR86 CYS87 GLN88 ALA89 TRP90 ASP91 SER92 ASN93 THR94 GLY95 VAL96 PHE97 GLY98 THR99 GLY100 THR101 LYS102 LEU103 THR104 VAL105 LEU106 ARG107 THR108 VAL109 ALA110 ALA111 PRO112 SER113 VAL114 PHE115 ILE116 PHE117 PRO118 PRO119 SER120 ASP121 GLU122 GLN123 LEU124 LYS125 SER126 GLY127 THR128 ALA129 SER130 VAL131 VAL132 CYS133 LEU134 LEU135 ASN136 ASN137 PHE138 TYR139 PRO140 ARG141 GLU142 ALA143 LYS144 VAL145 GLN146 TRP147 LYS148 VAL149 ASP150 ASN151 ALA152 LEU153 GLN154 SER155 GLY156 ASN157 SER158 GLN159 GLU160 SER161 VAL162 THR163 GLU164 GLN165 ASP166 SER167 LYS168 ASP169 SER170 THR171 TYR172 SER173 LEU174 SER175 SER176 THR177 LEU178 THR179 LEU180 SER181 LYS182 ALA183 ASP184 TYR185 GLU186 LYS187 HIS188 LYS189 VAL190 TYR191 ALA192 CYS193 GLU194 VAL195 THR196 HIS197 GLN198 GLY199 LEU200 SER201 SER202 PRO203 VAL204 THR205 LYS206 SER207 PHE208 ASN209 ARG210 GLY211
Unit 3 VAL2 THR3 LEU4 LYS5 GLU6 SER7 GLY8 ALA9 GLU10 VAL11 LYS12 LYS13 PRO14 GLY15 SER16 SER17 VAL18 LYS19 VAL20 SER21 CYS22 GLU23 ALA24 SER25 GLY26 GLY27 THR28 LEU29 SER30 ASN31 TYR32 VAL33 ILE34 THR35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 GLN43 GLY44 LEU45 GLU46 TRP47 MET48 GLY49 GLY50 PHE51 ILE52 PRO53 THR54 PHE55 ARG56 THR57 ALA58 MET59 TYR60 ALA61 GLN62 GLY63 PHE64 GLN65 GLY66 ARG67 VAL68 THR69 ILE70 THR71 ALA72 ASP73 GLU74 SER75 THR76 SER77 ILE78 ALA79 TYR80 MET81 GLU82 LEU83 THR84 ASN85 LEU86 ARG87 SER88 GLU89 ASP90 THR91 ALA92 VAL93 TYR94 TYR95 CYS96 ALA97 ARG98 GLY99 PRO100 LEU101 SER102 ARG103 GLY104 TYR105 TYR106 ASP107 TYR108 TRP109 GLY110 GLN111 GLY112 THR113 LEU114 VAL115 THR116 VAL117 SER118 SER119 ALA120 SER121 THR122 LYS123 GLY124 PRO125 SER126 VAL127 PHE128 PRO129 LEU130 ALA131 PRO132 SER133 SER138 GLY139 GLY140 THR141 ALA142 ALA143 LEU144 GLY145 CYS146 LEU147 VAL148 LYS149 ASP150 TYR151 PHE152 PRO153 GLU154 PRO155 VAL156 THR157 VAL158 SER159 TRP160 ASN161 SER162 GLY163 ALA164 LEU165 THR166 SER167 GLY168 VAL169 HIS170 THR171 PHE172 PRO173 ALA174 VAL175 LEU176 GLN177 SER178 SER179 GLY180 LEU181 TYR182 SER183 LEU184 SER185 SER186 VAL187 VAL188 THR189 VAL190 PRO191 SER192 SER193 SER194 LEU195 GLY196 THR197 GLN198 THR199 TYR200 ILE201 CYS202 ASN203 VAL204 ASN205 HIS206 LYS207 PRO208 SER209 ASN210 THR211 LYS212 VAL213 ASP214 LYS215 LYS216 ALA217 GLU218 PRO219
Unit 4 GLN1 VAL2 THR3 LEU4 LYS5 GLU6 SER7 GLY8 ALA9 GLU10 VAL11 LYS12 LYS13 PRO14 GLY15 SER16 SER17 VAL18 LYS19 VAL20 SER21 CYS22 GLU23 ALA24 SER25 GLY26 GLY27 THR28 LEU29 SER30 ASN31 TYR32 VAL33 ILE34 THR35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 GLN43 GLY44 LEU45 GLU46 TRP47 MET48 GLY49 GLY50 PHE51 ILE52 PRO53 THR54 PHE55 ARG56 THR57 ALA58 MET59 TYR60 ALA61 GLN62 GLY63 PHE64 GLN65 GLY66 ARG67 VAL68 THR69 ILE70 THR71 ALA72 ASP73 GLU74 SER75 THR76 SER77 ILE78 ALA79 TYR80 MET81 GLU82 LEU83 THR84 ASN85 LEU86 ARG87 SER88 GLU89 ASP90 THR91 ALA92 VAL93 TYR94 TYR95 CYS96 ALA97 ARG98 GLY99 PRO100 LEU101 SER102 ARG103 GLY104 TYR105 TYR106 ASP107 TYR108 TRP109 GLY110 GLN111 GLY112 THR113 LEU114 VAL115 THR116 VAL117 SER118 SER119 ALA120 SER121 THR122 LYS123 GLY124 PRO125 SER126 VAL127 PHE128 PRO129 LEU130 ALA131 PRO132 SER133 GLY139 GLY140 THR141 ALA142 ALA143 LEU144 GLY145 CYS146 LEU147 VAL148 LYS149 ASP150 TYR151 PHE152 PRO153 GLU154 PRO155 VAL156 THR157 VAL158 SER159 TRP160 ASN161 SER162 GLY163 ALA164 LEU165 THR166 SER167 GLY168 VAL169 HIS170 THR171 PHE172 PRO173 ALA174 VAL175 LEU176 GLN177 SER178 SER179 GLY180 LEU181 TYR182 SER183 LEU184 SER185 SER186 VAL187 VAL188 THR189 VAL190 PRO191 SER192 SER193 SER194 LEU195 GLY196 THR197 GLN198 THR199 TYR200 ILE201 CYS202 ASN203 VAL204 ASN205 HIS206 LYS207 PRO208 SER209 ASN210 THR211 LYS212 VAL213 ASP214 LYS215 LYS216 ALA217 GLU218 PRO219
Unit 5 SER1 TYR2 VAL3 LEU4 THR5 GLN6 PRO7 PRO8 SER9 VAL10 SER11 VAL12 SER13 PRO14 GLY15 GLN16 THR17 ALA18 ARG19 ILE20 THR21 CYS22 SER23 GLY24 ASP25 LYS26 LEU27 GLY28 ASP29 LYS30 TYR31 ALA32 SER33 TRP34 TYR35 GLN36 GLN37 LYS38 PRO39 GLY40 GLN41 SER42 PRO43 VAL44 LEU45 VAL46 ILE47 TYR48 GLN49 ASP50 ASN51 LYS52 ARG53 PRO54 SER55 GLU56 ILE57 PRO58 ALA59 ARG60 PHE61 SER62 GLY63 SER64 ASN65 SER66 GLY67 ASN68 THR69 ALA70 THR71 LEU72 THR73 ILE74 SER75 GLY76 ALA77 GLN78 ALA79 MET80 ASP81 GLU82 ALA83 ASP84 TYR85 TYR86 CYS87 GLN88 ALA89 TRP90 ASP91 SER92 ASN93 THR94 GLY95 VAL96 PHE97 GLY98 THR99 GLY100 THR101 LYS102 LEU103 THR104 VAL105 LEU106 ARG107 THR108 VAL109 ALA110 ALA111 PRO112 SER113 VAL114 PHE115 ILE116 PHE117 PRO118 PRO119 SER120 ASP121 GLU122 GLN123 LEU124 LYS125 SER126 GLY127 THR128 ALA129 SER130 VAL131 VAL132 CYS133 LEU134 LEU135 ASN136 ASN137 PHE138 TYR139 PRO140 ARG141 GLU142 ALA143 LYS144 VAL145 GLN146 TRP147 LYS148 VAL149 ASP150 ASN151 ALA152 LEU153 GLN154 SER155 GLY156 ASN157 SER158 GLN159 GLU160 SER161 VAL162 THR163 GLU164 GLN165 ASP166 SER167 LYS168 ASP169 SER170 THR171 TYR172 SER173 LEU174 SER175 SER176 THR177 LEU178 THR179 LEU180 SER181 LYS182 ALA183 ASP184 TYR185 GLU186 LYS187 HIS188 LYS189 VAL190 TYR191 ALA192 CYS193 GLU194 VAL195 THR196 HIS197 GLN198 GLY199 LEU200 SER201 SER202 PRO203 VAL204 THR205 LYS206 SER207 PHE208 ASN209 ARG210 GLY211
Unit 6 TYR2 VAL3 LEU4 THR5 GLN6 PRO7 PRO8 SER9 VAL10 SER11 VAL12 SER13 PRO14 GLY15 GLN16 THR17 ALA18 ARG19 ILE20 THR21 CYS22 SER23 GLY24 ASP25 LYS26 LEU27 GLY28 ASP29 LYS30 TYR31 ALA32 SER33 TRP34 TYR35 GLN36 GLN37 LYS38 PRO39 GLY40 GLN41 SER42 PRO43 VAL44 LEU45 VAL46 ILE47 TYR48 GLN49 ASP50 ASN51 LYS52 ARG53 PRO54 SER55 GLU56 ILE57 PRO58 ALA59 ARG60 PHE61 SER62 GLY63 SER64 ASN65 SER66 GLY67 ASN68 THR69 ALA70 THR71 LEU72 THR73 ILE74 SER75 GLY76 ALA77 GLN78 ALA79 MET80 ASP81 GLU82 ALA83 ASP84 TYR85 TYR86 CYS87 GLN88 ALA89 TRP90 ASP91 SER92 ASN93 THR94 GLY95 VAL96 PHE97 GLY98 THR99 GLY100 THR101 LYS102 LEU103 THR104 VAL105 LEU106 ARG107 THR108 VAL109 ALA110 ALA111 PRO112 SER113 VAL114 PHE115 ILE116 PHE117 PRO118 PRO119 SER120 ASP121 GLU122 GLN123 LEU124 LYS125 SER126 GLY127 THR128 ALA129 SER130 VAL131 VAL132 CYS133 LEU134 LEU135 ASN136 ASN137 PHE138 TYR139 PRO140 ARG141 GLU142 ALA143 LYS144 VAL145 GLN146 TRP147 LYS148 VAL149 ASP150 ASN151 ALA152 LEU153 GLN154 SER155 GLY156 ASN157 SER158 GLN159 GLU160 SER161 VAL162 THR163 GLU164 GLN165 ASP166 SER167 LYS168 ASP169 SER170 THR171 TYR172 SER173 LEU174 SER175 SER176 THR177 LEU178 THR179 LEU180 SER181 LYS182 ALA183 ASP184 TYR185 GLU186 LYS187 HIS188 LYS189 VAL190 TYR191 ALA192 CYS193 GLU194 VAL195 THR196 HIS197 GLN198 GLY199 LEU200 SER201 SER202 PRO203 VAL204 THR205 LYS206 SER207 PHE208 ASN209 ARG210 GLY211
Unit 7 VAL2 THR3 LEU4 LYS5 GLU6 SER7 GLY8 ALA9 GLU10 VAL11 LYS12 LYS13 PRO14 GLY15 SER16 SER17 VAL18 LYS19 VAL20 SER21 CYS22 GLU23 ALA24 SER25 GLY26 GLY27 THR28 LEU29 SER30 ASN31 TYR32 VAL33 ILE34 THR35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 GLN43 GLY44 LEU45 GLU46 TRP47 MET48 GLY49 GLY50 PHE51 ILE52 PRO53 THR54 PHE55 ARG56 THR57 ALA58 MET59 TYR60 ALA61 GLN62 GLY63 PHE64 GLN65 GLY66 ARG67 VAL68 THR69 ILE70 THR71 ALA72 ASP73 GLU74 SER75 SER77 ILE78 ALA79 TYR80 MET81 GLU82 LEU83 THR84 ASN85 LEU86 ARG87 SER88 GLU89 ASP90 THR91 ALA92 VAL93 TYR94 TYR95 CYS96 ALA97 ARG98 GLY99 PRO100 LEU101 SER102 ARG103 GLY104 TYR105 TYR106 ASP107 TYR108 TRP109 GLY110 GLN111 GLY112 THR113 LEU114 VAL115 THR116 VAL117 SER118 SER119 ALA120 SER121 THR122 LYS123 GLY124 PRO125 SER126 VAL127 PHE128 PRO129 LEU130 ALA131 PRO132 SER133 SER134 LYS135 SER136 THR137 SER138 GLY139 GLY140 THR141 ALA142 ALA143 LEU144 GLY145 CYS146 LEU147 VAL148 LYS149 ASP150 TYR151 PHE152 PRO153 GLU154 PRO155 VAL156 THR157 VAL158 SER159 TRP160 ASN161 SER162 GLY163 ALA164 LEU165 THR166 SER167 GLY168 VAL169 HIS170 THR171 PHE172 PRO173 ALA174 VAL175 LEU176 GLN177 SER178 SER179 GLY180 LEU181 TYR182 SER183 LEU184 SER185 SER186 VAL187 VAL188 THR189 VAL190 PRO191 SER192 SER193 SER194 LEU195 GLY196 THR197 GLN198 THR199 TYR200 ILE201 CYS202 ASN203 VAL204 ASN205 HIS206 LYS207 PRO208 SER209 ASN210 THR211 LYS212 VAL213 ASP214 LYS215 LYS216 ALA217 GLU218 PRO219
Unit 8 TYR2 VAL3 LEU4 THR5 GLN6 PRO7 PRO8 SER9 VAL10 SER11 VAL12 SER13 PRO14 GLY15 GLN16 THR17 ALA18 ARG19 ILE20 THR21 CYS22 SER23 GLY24 ASP25 LYS26 LEU27 GLY28 ASP29 LYS30 TYR31 ALA32 SER33 TRP34 TYR35 GLN36 GLN37 LYS38 PRO39 GLY40 GLN41 SER42 PRO43 VAL44 LEU45 VAL46 ILE47 TYR48 GLN49 ASP50 ASN51 LYS52 ARG53 PRO54 SER55 GLU56 ILE57 PRO58 ALA59 ARG60 PHE61 SER62 GLY63 SER64 ASN65 SER66 GLY67 ASN68 THR69 ALA70 THR71 LEU72 THR73 ILE74 SER75 GLY76 ALA77 GLN78 ALA79 MET80 ASP81 GLU82 ALA83 ASP84 TYR85 TYR86 CYS87 GLN88 ALA89 TRP90 ASP91 SER92 ASN93 THR94 GLY95 VAL96 PHE97 GLY98 THR99 GLY100 THR101 LYS102 LEU103 THR104 VAL105 LEU106 ARG107 THR108 VAL109 ALA110 ALA111 PRO112 SER113 VAL114 PHE115 ILE116 PHE117 PRO118 PRO119 SER120 ASP121 GLU122 GLN123 LEU124 LYS125 SER126 GLY127 THR128 ALA129 SER130 VAL131 VAL132 CYS133 LEU134 LEU135 ASN136 ASN137 PHE138 TYR139 PRO140 ARG141 GLU142 ALA143 LYS144 VAL145 GLN146 TRP147 LYS148 VAL149 ASP150 ASN151 ALA152 LEU153 GLN154 SER155 GLY156 ASN157 SER158 GLN159 GLU160 SER161 VAL162 THR163 GLU164 GLN165 ASP166 SER167 LYS168 ASP169 SER170 THR171 TYR172 SER173 LEU174 SER175 SER176 THR177 LEU178 THR179 LEU180 SER181 LYS182 ALA183 ASP184 TYR185 GLU186 LYS187 HIS188 LYS189 VAL190 TYR191 ALA192 CYS193 GLU194 VAL195 THR196 HIS197 GLN198 GLY199 LEU200 SER201 SER202 PRO203 VAL204 THR205 LYS206 SER207 PHE208 ASN209 ARG210 GLY211
Unit 9 GLY436 TRP437 LEU438 ALA439 GLY440 LEU441 PHE442 TYR443 GLN444 HIS445 LYS446
Unit 10 GLY436 TRP437 LEU438 ALA439 GLY440 LEU441 PHE442 TYR443 GLN444 HIS445 LYS446
Unit 11 GLY436 TRP437 LEU438 ALA439 GLY440 LEU441 PHE442 TYR443 GLN444 HIS445 LYS446
Unit 12 GLY436 TRP437 LEU438 ALA439 GLY440 LEU441 PHE442 TYR443 GLN444 HIS445 LYS446

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany