4JTK - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF R117Q MUTANT OF 3-DEOXY-D-MANNO-OCTULOS PHOSPHATE SYNTHASE (KDO8PS) FROM NEISSERIA MENINGITIDIS
• Keywords: MANNO-OCTULOSONATE, SYNTHASE, LIPOPOLYSACCHARIDE, KDOP, KDO8 KDO8PS, TIM BARREL, TRANSFERASE, LIPOPOLYSACCHARIDE BIOSYNT
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4JTK	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE	A	252	1941	0
2	Protein	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE	B	253	1952	0
3	Protein	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE	C	256	1966	0
4	Protein	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE	D	257	1975	0
5	Ligand	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE	B	1	0	1
6	Ligand	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE	C	2	0	2
7	Ligand	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE	D	2	0	2
8	Water			505	0	505
total				1528	7834	510

Proteins

Unit 1	MET 1 ASP 2 ILE 3 LYS 4 ILE 5 ASN 6 ASP 7 ILE 8 THR 9 LEU 10 GLY 11 ASN 12 ASN 13 SER 14 PRO 15 PHE 16 VAL 17 LEU 18 PHE 19 GLY 20 GLY 21 ILE 22 ASN 23 VAL 24 LEU 25 GLU 26 SER 27 LEU 28 ASP 29 SER 30 THR 31 LEU 32 GLN 33 THR 34 CYS 35 ALA 36 HIS 37 TYR 38 VAL 39 GLU 40 VAL 41 THR 42 ARG 43 LYS 44 LEU 45 GLY 46 ILE 47 PRO 48 TYR 49 ILE 50 PHE 51 LYS 52 ALA 53 SER 54 PHE 55 ASP 56 LYS 57 ALA 58 ASN 59 ARG 60 SER 61 SER 62 ILE 63 HIS 64 SER 65 TYR 66 ARG 67 GLY 68 VAL 69 GLY 70 LEU 71 GLU 72 GLU 73 GLY 74 LEU 75 LYS 76 ILE 77 PHE 78 GLU 79 LYS 80 VAL 81 LYS 82 ALA 83 GLU 84 PHE 85 GLY 86 ILE 87 PRO 88 VAL 89 ILE 90 THR 91 ASP 92 VAL 93 HIS 94 GLU 95 PRO 96 HIS 97 GLN 98 CYS 99 GLN 100 PRO 101 VAL 102 ALA 103 GLU 104 VAL 105 CYS 106 ASP 107 VAL 108 ILE 109 GLN 110 LEU 111 PRO 112 ALA 113 PHE 114 LEU 115 ALA 116 GLN 117 GLN 118 THR 119 ASP 120 LEU 121 VAL 122 VAL 123 ALA 124 MET 125 ALA 126 LYS 127 THR 128 GLY 129 ASN 130 VAL 131 VAL 132 ASN 133 ILE 134 LYS 135 LYS 136 PRO 137 GLN 138 PHE 139 LEU 140 SER 141 PRO 142 SER 143 GLN 144 MET 145 LYS 146 ASN 147 ILE 148 VAL 149 GLU 150 LYS 151 PHE 152 HIS 153 GLU 154 ALA 155 GLY 156 ASN 157 GLY 158 LYS 159 LEU 160 ILE 161 LEU 162 CYS 163 GLU 164 ARG 165 GLY 166 SER 167 SER 168 PHE 169 GLY 170 TYR 171 ASP 172 ASN 173 LEU 174 VAL 175 VAL 176 ASP 177 MET 178 LEU 179 GLY 180 PHE 181 GLY 182 VAL 183 MET 184 LYS 185 GLN 186 THR 187 CYS 188 GLY 189 ASN 190 LEU 191 PRO 192 VAL 193 ILE 194 PHE 195 ASP 196 VAL 197 THR 198 HIS 199 SER 200 LEU 201 GLN 202 THR 203 ARG 204 GLY 213 ARG 214 ARG 215 ALA 216 GLN 217 ALA 218 LEU 219 ASP 220 LEU 221 ALA 222 LEU 223 ALA 224 GLY 225 MET 226 ALA 227 THR 228 ARG 229 LEU 230 ALA 231 GLY 232 LEU 233 PHE 234 LEU 235 GLU 236 LEU 254 HIS 255 LEU 256 LEU 257 GLU 258 ASP 259 PHE 260 LEU 261 ILE 262 ARG 263 ILE 264 LYS 265 ALA 266 LEU 267 ASP 268 ASP 269 LEU 270 ILE 271 LYS 272 SER 273 GLN 274 PRO 275 ILE 276 LEU 277
Unit 2	MET 1 ASP 2 ILE 3 LYS 4 ILE 5 ASN 6 ASP 7 ILE 8 THR 9 LEU 10 GLY 11 ASN 12 ASN 13 SER 14 PRO 15 PHE 16 VAL 17 LEU 18 PHE 19 GLY 20 GLY 21 ILE 22 ASN 23 VAL 24 LEU 25 GLU 26 SER 27 LEU 28 ASP 29 SER 30 THR 31 LEU 32 GLN 33 THR 34 CYS 35 ALA 36 HIS 37 TYR 38 VAL 39 GLU 40 VAL 41 THR 42 ARG 43 LYS 44 LEU 45 GLY 46 ILE 47 PRO 48 TYR 49 ILE 50 PHE 51 LYS 52 ALA 53 SER 54 PHE 55 ASP 56 LYS 57 ALA 58 ASN 59 ARG 60 SER 61 SER 62 ILE 63 HIS 64 SER 65 TYR 66 ARG 67 GLY 68 VAL 69 GLY 70 LEU 71 GLU 72 GLU 73 GLY 74 LEU 75 LYS 76 ILE 77 PHE 78 GLU 79 LYS 80 VAL 81 LYS 82 ALA 83 GLU 84 PHE 85 GLY 86 ILE 87 PRO 88 VAL 89 ILE 90 THR 91 ASP 92 VAL 93 HIS 94 GLU 95 PRO 96 HIS 97 GLN 98 CYS 99 GLN 100 PRO 101 VAL 102 ALA 103 GLU 104 VAL 105 CYS 106 ASP 107 VAL 108 ILE 109 GLN 110 LEU 111 PRO 112 ALA 113 PHE 114 LEU 115 ALA 116 GLN 117 GLN 118 THR 119 ASP 120 LEU 121 VAL 122 VAL 123 ALA 124 MET 125 ALA 126 LYS 127 THR 128 GLY 129 ASN 130 VAL 131 VAL 132 ASN 133 ILE 134 LYS 135 LYS 136 PRO 137 GLN 138 PHE 139 LEU 140 SER 141 PRO 142 SER 143 GLN 144 MET 145 LYS 146 ASN 147 ILE 148 VAL 149 GLU 150 LYS 151 PHE 152 HIS 153 GLU 154 ALA 155 GLY 156 ASN 157 GLY 158 LYS 159 LEU 160 ILE 161 LEU 162 CYS 163 GLU 164 ARG 165 GLY 166 SER 167 SER 168 PHE 169 GLY 170 TYR 171 ASP 172 ASN 173 LEU 174 VAL 175 VAL 176 ASP 177 MET 178 LEU 179 GLY 180 PHE 181 GLY 182 VAL 183 MET 184 LYS 185 GLN 186 THR 187 CYS 188 GLY 189 ASN 190 LEU 191 PRO 192 VAL 193 ILE 194 PHE 195 ASP 196 VAL 197 THR 198 HIS 199 SER 200 LEU 201 GLN 202 THR 203 ARG 204 ARG 214 ARG 215 ALA 216 GLN 217 ALA 218 LEU 219 ASP 220 LEU 221 ALA 222 LEU 223 ALA 224 GLY 225 MET 226 ALA 227 THR 228 ARG 229 LEU 230 ALA 231 GLY 232 LEU 233 PHE 234 LEU 235 GLU 236 SER 237 HIS 255 LEU 256 LEU 257 GLU 258 ASP 259 PHE 260 LEU 261 ILE 262 ARG 263 ILE 264 LYS 265 ALA 266 LEU 267 ASP 268 ASP 269 LEU 270 ILE 271 LYS 272 SER 273 GLN 274 PRO 275 ILE 276 LEU 277 THR 278 ILE 279
Unit 3	MET 1 ASP 2 ILE 3 LYS 4 ILE 5 ASN 6 ASP 7 ILE 8 THR 9 LEU 10 GLY 11 ASN 12 ASN 13 SER 14 PRO 15 PHE 16 VAL 17 LEU 18 PHE 19 GLY 20 GLY 21 ILE 22 ASN 23 VAL 24 LEU 25 GLU 26 SER 27 LEU 28 ASP 29 SER 30 THR 31 LEU 32 GLN 33 THR 34 CYS 35 ALA 36 HIS 37 TYR 38 VAL 39 GLU 40 VAL 41 THR 42 ARG 43 LYS 44 LEU 45 GLY 46 ILE 47 PRO 48 TYR 49 ILE 50 PHE 51 LYS 52 ALA 53 SER 54 PHE 55 ASP 56 LYS 57 ALA 58 ASN 59 ARG 60 SER 61 SER 62 ILE 63 HIS 64 SER 65 TYR 66 ARG 67 GLY 68 VAL 69 GLY 70 LEU 71 GLU 72 GLU 73 GLY 74 LEU 75 LYS 76 ILE 77 PHE 78 GLU 79 LYS 80 VAL 81 LYS 82 ALA 83 GLU 84 PHE 85 GLY 86 ILE 87 PRO 88 VAL 89 ILE 90 THR 91 ASP 92 VAL 93 HIS 94 GLU 95 PRO 96 HIS 97 GLN 98 CYS 99 GLN 100 PRO 101 VAL 102 ALA 103 GLU 104 VAL 105 CYS 106 ASP 107 VAL 108 ILE 109 GLN 110 LEU 111 PRO 112 ALA 113 PHE 114 LEU 115 ALA 116 GLN 117 GLN 118 THR 119 ASP 120 LEU 121 VAL 122 VAL 123 ALA 124 MET 125 ALA 126 LYS 127 THR 128 GLY 129 ASN 130 VAL 131 VAL 132 ASN 133 ILE 134 LYS 135 LYS 136 PRO 137 GLN 138 PHE 139 LEU 140 SER 141 PRO 142 SER 143 GLN 144 MET 145 LYS 146 ASN 147 ILE 148 VAL 149 GLU 150 LYS 151 PHE 152 HIS 153 GLU 154 ALA 155 GLY 156 ASN 157 GLY 158 LYS 159 LEU 160 ILE 161 LEU 162 CYS 163 GLU 164 ARG 165 GLY 166 SER 167 SER 168 PHE 169 GLY 170 TYR 171 ASP 172 ASN 173 LEU 174 VAL 175 VAL 176 ASP 177 MET 178 LEU 179 GLY 180 PHE 181 GLY 182 VAL 183 MET 184 LYS 185 GLN 186 THR 187 CYS 188 GLY 189 ASN 190 LEU 191 PRO 192 VAL 193 ILE 194 PHE 195 ASP 196 VAL 197 THR 198 HIS 199 SER 200 LEU 201 GLN 202 ARG 214 ARG 215 ALA 216 GLN 217 ALA 218 LEU 219 ASP 220 LEU 221 ALA 222 LEU 223 ALA 224 GLY 225 MET 226 ALA 227 THR 228 ARG 229 LEU 230 ALA 231 GLY 232 LEU 233 PHE 234 LEU 235 GLU 236 SER 237 HIS 238 PRO 239 ALA 251 LEU 252 PRO 253 LEU 254 HIS 255 LEU 256 LEU 257 GLU 258 ASP 259 PHE 260 LEU 261 ILE 262 ARG 263 ILE 264 LYS 265 ALA 266 LEU 267 ASP 268 ASP 269 LEU 270 ILE 271 LYS 272 SER 273 GLN 274 PRO 275 ILE 276 LEU 277 THR 278
Unit 4	MET 1 ASP 2 ILE 3 LYS 4 ILE 5 ASN 6 ASP 7 ILE 8 THR 9 LEU 10 GLY 11 ASN 12 ASN 13 SER 14 PRO 15 PHE 16 VAL 17 LEU 18 PHE 19 GLY 20 GLY 21 ILE 22 ASN 23 VAL 24 LEU 25 GLU 26 SER 27 LEU 28 ASP 29 SER 30 THR 31 LEU 32 GLN 33 THR 34 CYS 35 ALA 36 HIS 37 TYR 38 VAL 39 GLU 40 VAL 41 THR 42 ARG 43 LYS 44 LEU 45 GLY 46 ILE 47 PRO 48 TYR 49 ILE 50 PHE 51 LYS 52 ALA 53 SER 54 PHE 55 ASP 56 LYS 57 ALA 58 ASN 59 ARG 60 SER 61 SER 62 ILE 63 HIS 64 SER 65 TYR 66 ARG 67 GLY 68 VAL 69 GLY 70 LEU 71 GLU 72 GLU 73 GLY 74 LEU 75 LYS 76 ILE 77 PHE 78 GLU 79 LYS 80 VAL 81 LYS 82 ALA 83 GLU 84 PHE 85 GLY 86 ILE 87 PRO 88 VAL 89 ILE 90 THR 91 ASP 92 VAL 93 HIS 94 GLU 95 PRO 96 HIS 97 GLN 98 CYS 99 GLN 100 PRO 101 VAL 102 ALA 103 GLU 104 VAL 105 CYS 106 ASP 107 VAL 108 ILE 109 GLN 110 LEU 111 PRO 112 ALA 113 PHE 114 LEU 115 ALA 116 GLN 117 GLN 118 THR 119 ASP 120 LEU 121 VAL 122 VAL 123 ALA 124 MET 125 ALA 126 LYS 127 THR 128 GLY 129 ASN 130 VAL 131 VAL 132 ASN 133 ILE 134 LYS 135 LYS 136 PRO 137 GLN 138 PHE 139 LEU 140 SER 141 PRO 142 SER 143 GLN 144 MET 145 LYS 146 ASN 147 ILE 148 VAL 149 GLU 150 LYS 151 PHE 152 HIS 153 GLU 154 ALA 155 GLY 156 ASN 157 GLY 158 LYS 159 LEU 160 ILE 161 LEU 162 CYS 163 GLU 164 ARG 165 GLY 166 SER 167 SER 168 PHE 169 GLY 170 TYR 171 ASP 172 ASN 173 LEU 174 VAL 175 VAL 176 ASP 177 MET 178 LEU 179 GLY 180 PHE 181 GLY 182 VAL 183 MET 184 LYS 185 GLN 186 THR 187 CYS 188 GLY 189 ASN 190 LEU 191 PRO 192 VAL 193 ILE 194 PHE 195 ASP 196 VAL 197 THR 198 HIS 199 SER 200 LEU 201 GLN 202 THR 203 ARG 204 ARG 214 ARG 215 ALA 216 GLN 217 ALA 218 LEU 219 ASP 220 LEU 221 ALA 222 LEU 223 ALA 224 GLY 225 MET 226 ALA 227 THR 228 ARG 229 LEU 230 ALA 231 GLY 232 LEU 233 PHE 234 LEU 235 GLU 236 SER 237 HIS 238 PRO 239 ALA 251 LEU 252 PRO 253 LEU 254 HIS 255 LEU 256 LEU 257 GLU 258 ASP 259 PHE 260 LEU 261 ILE 262 ARG 263 ILE 264 LYS 265 ALA 266 LEU 267 ASP 268 ASP 269 LEU 270 ILE 271 LYS 272 SER 273 GLN 274 PRO 275 ILE 276 LEU 277

Ligands

Unit 5	CL 301
Unit 6	CL 301 NA 302
Unit 7	CL 301 CL 302