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Title | CRYSTAL STRUCTURE OF E. COLI EXONUCLEASE I IN COMPLEX WITH A OLIGONUCLEOTIDE | |
Keywords | EXONUCLEASE, DNAQ SUPERFAMILY, 3'-5' SSDNA EXONUCLEASE, HYDR COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 4JRQ | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Other macromolecule | 5CY-DA13 | C | 13 | 273 | 0 |
2 | Other macromolecule | 5CY-DA13 | D | 13 | 273 | 0 |
3 | Protein | EXODEOXYRIBONUCLEASE I | A | 460 | 3531 | 0 |
4 | Protein | EXODEOXYRIBONUCLEASE I | B | 459 | 3489 | 0 |
5 | Ligand | EXODEOXYRIBONUCLEASE I | A | 7 | 0 | 35 |
6 | Ligand | EXODEOXYRIBONUCLEASE I | B | 2 | 0 | 10 |
total | 954 | 7566 | 45 |
Unit 3 | GLN8 SER9 THR10 PHE11 LEU12 PHE13 HIS14 ASP15 TYR16 GLU17 THR18 PHE19 GLY20 THR21 HIS22 PRO23 ALA24 LEU25 ASP26 ARG27 PRO28 ALA29 GLN30 PHE31 ALA32 ALA33 ILE34 ARG35 THR36 ASP37 SER38 GLU39 PHE40 ASN41 VAL42 ILE43 GLY44 GLU45 PRO46 GLU47 VAL48 PHE49 TYR50 CYS51 LYS52 PRO53 ALA54 ASP55 ASP56 TYR57 LEU58 PRO59 GLN60 PRO61 GLY62 ALA63 VAL64 LEU65 ILE66 THR67 GLY68 ILE69 THR70 PRO71 GLN72 GLU73 ALA74 ARG75 ALA76 LYS77 GLY78 GLU79 ASN80 GLU81 ALA82 ALA83 PHE84 ALA85 ALA86 ARG87 ILE88 HIS89 SER90 LEU91 PHE92 THR93 VAL94 PRO95 LYS96 THR97 CYS98 ILE99 LEU100 GLY101 TYR102 ASN103 ASN104 VAL105 ARG106 PHE107 ASP108 ASP109 GLU110 VAL111 THR112 ARG113 ASN114 ILE115 PHE116 TYR117 ARG118 ASN119 PHE120 TYR121 ASP122 PRO123 TYR124 ALA125 TRP126 SER127 TRP128 GLN129 HIS130 ASP131 ASN132 SER133 ARG134 TRP135 ASP136 LEU137 LEU138 ASP139 VAL140 MET141 ARG142 ALA143 CYS144 TYR145 ALA146 LEU147 ARG148 PRO149 GLU150 GLY151 ILE152 ASN153 TRP154 PRO155 GLU156 ASN157 ASP158 ASP159 GLY160 LEU161 PRO162 SER163 PHE164 ARG165 LEU166 GLU167 HIS168 LEU169 THR170 LYS171 ALA172 ASN173 GLY174 ILE175 HIS181 ASP182 ALA183 MET184 ALA185 ASP186 VAL187 TYR188 ALA189 THR190 ILE191 ALA192 MET193 ALA194 LYS195 LEU196 VAL197 LYS198 THR199 ARG200 GLN201 PRO202 ARG203 LEU204 PHE205 ASP206 TYR207 LEU208 PHE209 THR210 HIS211 ARG212 ASN213 LYS214 HIS215 LYS216 LEU217 MET218 ALA219 LEU220 ILE221 ASP222 VAL223 PRO224 GLN225 MET226 LYS227 PRO228 LEU229 VAL230 HIS231 VAL232 SER233 GLY234 MET235 PHE236 GLY237 ALA238 TRP239 ARG240 GLY241 ASN242 THR243 SER244 TRP245 VAL246 ALA247 PRO248 LEU249 ALA250 TRP251 HIS252 PRO253 GLU254 ASN255 ARG256 ASN257 ALA258 VAL259 ILE260 MET261 VAL262 ASP263 LEU264 ALA265 GLY266 ASP267 ILE268 SER269 PRO270 LEU271 LEU272 GLU273 LEU274 ASP275 SER276 ASP277 THR278 LEU279 ARG280 GLU281 ARG282 LEU283 TYR284 THR285 ALA286 LYS287 THR288 ASP289 LEU290 GLY291 ASP292 ASN293 ALA294 ALA295 VAL296 PRO297 VAL298 LYS299 LEU300 VAL301 HIS302 ILE303 ASN304 LYS305 CYS306 PRO307 VAL308 LEU309 ALA310 GLN311 ALA312 ASN313 THR314 LEU315 ARG316 PRO317 GLU318 ASP319 ALA320 ASP321 ARG322 LEU323 GLY324 ILE325 ASN326 ARG327 GLN328 HIS329 CYS330 LEU331 ASP332 ASN333 LEU334 LYS335 ILE336 LEU337 ARG338 GLU339 ASN340 PRO341 GLN342 VAL343 ARG344 GLU345 LYS346 VAL347 VAL348 ALA349 ILE350 PHE351 ALA352 GLU353 ALA354 THR358 PRO359 SER360 ASP361 ASN362 VAL363 ASP364 ALA365 GLN366 LEU367 TYR368 ASN369 GLY370 PHE371 PHE372 SER373 ASP374 ALA375 ASP376 ARG377 ALA378 ALA379 MET380 LYS381 ILE382 VAL383 LEU384 GLU385 THR386 GLU387 PRO388 ARG389 ASN390 LEU391 PRO392 ALA393 LEU394 ASP395 ILE396 THR397 PHE398 VAL399 ASP400 LYS401 ARG402 ILE403 GLU404 LYS405 LEU406 LEU407 PHE408 ASN409 TYR410 ARG411 ALA412 ARG413 ASN414 PHE415 PRO416 GLY417 THR418 LEU419 ASP420 TYR421 ALA422 GLU423 GLN424 GLN425 ARG426 TRP427 LEU428 GLU429 HIS430 ARG431 ARG432 GLN433 VAL434 PHE435 THR436 PRO437 GLU438 PHE439 LEU440 GLN441 GLY442 TYR443 ALA444 ASP445 GLU446 LEU447 GLN448 MET449 LEU450 VAL451 GLN452 GLN453 TYR454 ALA455 ASP456 ASP457 LYS458 GLU459 LYS460 VAL461 ALA462 LEU463 LEU464 LYS465 ALA466 LEU467 TRP468 GLN469 TYR470 ALA471 GLU472 GLU473 ILE474 VAL475 |
Unit 4 | GLN8 SER9 THR10 PHE11 LEU12 PHE13 HIS14 ASP15 TYR16 GLU17 THR18 PHE19 GLY20 THR21 HIS22 PRO23 ALA24 LEU25 ASP26 ARG27 PRO28 ALA29 GLN30 PHE31 ALA32 ALA33 ILE34 ARG35 THR36 ASP37 SER38 GLU39 PHE40 ASN41 VAL42 ILE43 GLY44 GLU45 PRO46 GLU47 VAL48 PHE49 TYR50 CYS51 LYS52 PRO53 ALA54 ASP55 ASP56 TYR57 LEU58 PRO59 GLN60 PRO61 GLY62 ALA63 VAL64 LEU65 ILE66 THR67 GLY68 ILE69 THR70 PRO71 GLN72 GLU73 ALA74 ARG75 ALA76 LYS77 GLY78 GLU79 ASN80 GLU81 ALA82 ALA83 PHE84 ALA85 ALA86 ARG87 ILE88 HIS89 SER90 LEU91 PHE92 THR93 VAL94 PRO95 LYS96 THR97 CYS98 ILE99 LEU100 GLY101 TYR102 ASN103 ASN104 VAL105 ARG106 PHE107 ASP108 ASP109 GLU110 VAL111 THR112 ARG113 ASN114 ILE115 PHE116 TYR117 ARG118 ASN119 PHE120 TYR121 ASP122 PRO123 TYR124 ALA125 TRP126 SER127 TRP128 GLN129 HIS130 ASP131 ASN132 SER133 ARG134 TRP135 ASP136 LEU137 LEU138 ASP139 VAL140 MET141 ARG142 ALA143 CYS144 TYR145 ALA146 LEU147 ARG148 PRO149 GLU150 GLY151 ILE152 ASN153 TRP154 PRO155 GLU156 ASN157 ASP158 ASP159 GLY160 LEU161 PRO162 SER163 PHE164 ARG165 LEU166 GLU167 HIS168 LEU169 THR170 LYS171 ALA172 ASN173 GLY174 ILE175 GLU176 ASP182 ALA183 MET184 ALA185 ASP186 VAL187 TYR188 ALA189 THR190 ILE191 ALA192 MET193 ALA194 LYS195 LEU196 VAL197 LYS198 THR199 ARG200 GLN201 PRO202 ARG203 LEU204 PHE205 ASP206 TYR207 LEU208 PHE209 THR210 HIS211 ARG212 ASN213 LYS214 HIS215 LYS216 LEU217 MET218 ALA219 LEU220 ILE221 ASP222 VAL223 PRO224 GLN225 MET226 LYS227 PRO228 LEU229 VAL230 HIS231 VAL232 SER233 GLY234 MET235 PHE236 GLY237 ALA238 TRP239 ARG240 GLY241 ASN242 THR243 SER244 TRP245 VAL246 ALA247 PRO248 LEU249 ALA250 TRP251 HIS252 PRO253 GLU254 ASN255 ARG256 ASN257 ALA258 VAL259 ILE260 MET261 VAL262 ASP263 LEU264 ALA265 GLY266 ASP267 ILE268 SER269 PRO270 LEU271 LEU272 GLU273 LEU274 ASP275 SER276 ASP277 THR278 LEU279 ARG280 GLU281 ARG282 LEU283 TYR284 THR285 ALA286 LYS287 THR288 ASP289 LEU290 GLY291 ASP292 ASN293 ALA294 ALA295 VAL296 PRO297 VAL298 LYS299 LEU300 VAL301 HIS302 ILE303 ASN304 LYS305 CYS306 PRO307 VAL308 LEU309 ALA310 GLN311 ALA312 ASN313 THR314 LEU315 ARG316 PRO317 GLU318 ASP319 ALA320 ASP321 ARG322 LEU323 GLY324 ILE325 ASN326 ARG327 GLN328 HIS329 CYS330 LEU331 ASP332 ASN333 LEU334 LYS335 ILE336 LEU337 ARG338 GLU339 ASN340 PRO341 GLN342 VAL343 ARG344 GLU345 LYS346 VAL347 VAL348 ALA349 ILE350 PHE351 ALA352 GLU353 ALA354 PRO359 SER360 ASP361 ASN362 VAL363 ASP364 ALA365 GLN366 LEU367 TYR368 ASN369 GLY370 PHE371 PHE372 SER373 ASP374 ALA375 ASP376 ARG377 ALA378 ALA379 MET380 LYS381 ILE382 VAL383 LEU384 GLU385 THR386 GLU387 PRO388 ARG389 ASN390 LEU391 PRO392 ALA393 LEU394 ASP395 ILE396 THR397 PHE398 VAL399 ASP400 LYS401 ARG402 ILE403 GLU404 LYS405 LEU406 LEU407 PHE408 ASN409 TYR410 ARG411 ALA412 ARG413 ASN414 PHE415 PRO416 GLY417 THR418 LEU419 ASP420 TYR421 ALA422 GLU423 GLN424 GLN425 ARG426 TRP427 LEU428 GLU429 HIS430 ARG431 ARG432 GLN433 VAL434 PHE435 THR436 PRO437 GLU438 PHE439 LEU440 GLN441 GLY442 TYR443 ALA444 ASP445 GLU446 LEU447 GLN448 MET449 LEU450 VAL451 GLN452 GLN453 TYR454 ALA455 ASP456 ASP457 LYS458 GLU459 LYS460 VAL461 ALA462 LEU463 LEU464 LYS465 ALA466 LEU467 TRP468 GLN469 TYR470 ALA471 GLU472 GLU473 ILE474 VAL475 |
Unit 1 | DA1 DA2 DA3 DA4 DA5 DA6 DA7 DA8 DA9 DA10 DA11 DA12 DA13 |
Unit 2 | DA1 DA2 DA3 DA4 DA5 DA6 DA7 DA8 DA9 DA10 DA11 DA12 DA13 |
Unit 5 | SO4501 SO4502 SO4503 SO4504 SO4505 SO4506 SO4507 |
Unit 6 | SO4501 SO4502 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |