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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF BETA-KETOACYL-ACP SYNTHASE II (FABF) FR CHOLERAE (SPACE GROUP P212121) AT 1.75 ANGSTROM
Keywords STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFEC DISEASES, CSGID, VIBRIO CHOLERAE, FABF, BETA-KETOACYL-(ACYL PROTEIN) SYNTHASE, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4JRM     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 2  D 412 2986 0
2  Protein   3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 2  A 412 2974 0
3  Protein   3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 2  B 412 2991 0
4  Protein   3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 2  C 413 3006 0
5  Ligand   3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 2  D 1 0 4
6  Ligand   3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 2  A 1 0 6
7  Ligand   3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 2  B 2 0 10
8 Water     684 0 684
total       2337 11957 704

Proteins
Unit 1 LYS3 ARG4 ARG5 VAL6 VAL7 VAL8 THR9 GLY10 MET11 GLY12 MET13 LEU14 SER15 PRO16 VAL17 GLY18 ASN19 THR20 VAL21 GLU22 SER23 SER24 TRP25 LYS26 ALA27 LEU28 LEU29 ALA30 GLY31 GLN32 SER33 GLY34 ILE35 VAL36 ASN37 ILE38 GLU39 HIS40 PHE41 ASP42 THR43 THR44 ASN45 PHE46 SER47 THR48 ARG49 PHE50 ALA51 GLY52 LEU53 VAL54 LYS55 GLY56 PHE57 ASP58 CYS59 GLU60 GLN61 TYR62 MET63 SER64 LYS65 LYS66 ASP67 ALA68 ARG69 LYS70 MET71 ASP72 LEU73 PHE74 ILE75 GLN76 TYR77 GLY78 ILE79 ALA80 ALA81 GLY82 ILE83 GLN84 ALA85 LEU86 GLU87 ASP88 SER89 GLY90 LEU91 GLU92 VAL93 ASN94 GLU95 GLU96 ASN97 ALA98 ALA99 ARG100 ILE101 GLY102 VAL103 ALA104 ILE105 GLY106 SER107 GLY108 ILE109 GLY110 GLY111 LEU112 GLU113 LEU114 ILE115 GLU116 THR117 GLY118 HIS119 GLN120 ALA121 LEU122 ILE123 GLU124 LYS125 GLY126 PRO127 ARG128 LYS129 VAL130 SER131 PRO132 PHE133 PHE134 VAL135 PRO136 SER137 THR138 ILE139 VAL140 ASN141 MET142 ILE143 ALA144 GLY145 ASN146 LEU147 SER148 ILE149 MET150 ARG151 GLY152 LEU153 ARG154 GLY155 PRO156 ASN157 ILE158 ALA159 ILE160 SER161 THR162 ALA163 CYS164 THR165 THR166 GLY167 LEU168 HIS169 ASN170 ILE171 GLY172 HIS173 ALA174 ALA175 ARG176 MET177 ILE178 ALA179 TYR180 GLY181 ASP182 ALA183 ASP184 ALA185 MET186 VAL187 ALA188 GLY189 GLY190 ALA191 GLU192 LYS193 ALA194 SER195 THR196 PRO197 LEU198 GLY199 MET200 ALA201 GLY202 PHE203 GLY204 ALA205 ALA206 LYS207 ALA208 LEU209 SER210 THR211 ARG212 ASN213 ASP214 GLU215 PRO216 GLN217 LYS218 ALA219 SER220 ARG221 PRO222 TRP223 ASP224 LYS225 ASP226 ARG227 ASP228 GLY229 PHE230 VAL231 LEU232 GLY233 ASP234 GLY235 ALA236 GLY237 ILE238 MET239 VAL240 LEU241 GLU242 GLU243 TYR244 GLU245 HIS246 ALA247 LYS248 ALA249 ARG250 GLY251 ALA252 LYS253 ILE254 TYR255 ALA256 GLU257 VAL258 VAL259 GLY260 PHE261 GLY262 MET263 SER264 GLY265 ASP266 ALA267 TYR268 HIS269 MET270 THR271 SER272 PRO273 SER274 GLU275 ASP276 GLY277 SER278 GLY279 GLY280 ALA281 LEU282 ALA283 MET284 GLU285 ALA286 ALA287 MET288 ARG289 ASP290 ALA291 GLY292 VAL293 THR294 GLY295 GLU296 GLN297 ILE298 GLY299 TYR300 VAL301 ASN302 ALA303 HIS304 GLY305 THR306 SER307 THR308 PRO309 ALA310 GLY311 ASP312 VAL313 ALA314 GLU315 VAL316 LYS317 GLY318 ILE319 LYS320 ARG321 ALA322 LEU323 GLY324 GLU325 ALA326 GLY327 THR328 LYS329 GLN330 VAL331 LEU332 VAL333 SER334 SER335 THR336 LYS337 SER338 MET339 THR340 GLY341 HIS342 LEU343 LEU344 GLY345 ALA346 ALA347 GLY348 SER349 VAL350 GLU351 ALA352 ILE353 ILE354 THR355 VAL356 MET357 SER358 LEU359 VAL360 ASP361 GLN362 MET363 VAL364 PRO365 PRO366 THR367 ILE368 ASN369 LEU370 ASP371 ASN372 PRO373 GLU374 GLU375 GLY376 LEU377 GLY378 VAL379 ASP380 LEU381 VAL382 PRO383 HIS384 VAL385 ALA386 ARG387 LYS388 VAL389 GLU390 SER391 MET392 GLU393 TYR394 ALA395 MET396 CYS397 ASN398 SER399 PHE400 GLY401 PHE402 GLY403 GLY404 THR405 ASN406 GLY407 SER408 LEU409 ILE410 PHE411 LYS412 ARG413 MET414
Unit 2 LYS3 ARG4 ARG5 VAL6 VAL7 VAL8 THR9 GLY10 MET11 GLY12 MET13 LEU14 SER15 PRO16 VAL17 GLY18 ASN19 THR20 VAL21 GLU22 SER23 SER24 TRP25 LYS26 ALA27 LEU28 LEU29 ALA30 GLY31 GLN32 SER33 GLY34 ILE35 VAL36 ASN37 ILE38 GLU39 HIS40 PHE41 ASP42 THR43 THR44 ASN45 PHE46 SER47 THR48 ARG49 PHE50 ALA51 GLY52 LEU53 VAL54 LYS55 GLY56 PHE57 ASP58 CYS59 GLU60 GLN61 TYR62 MET63 SER64 LYS65 LYS66 ASP67 ALA68 ARG69 LYS70 MET71 ASP72 LEU73 PHE74 ILE75 GLN76 TYR77 GLY78 ILE79 ALA80 ALA81 GLY82 ILE83 GLN84 ALA85 LEU86 GLU87 ASP88 SER89 GLY90 LEU91 GLU92 VAL93 ASN94 GLU95 GLU96 ASN97 ALA98 ALA99 ARG100 ILE101 GLY102 VAL103 ALA104 ILE105 GLY106 SER107 GLY108 ILE109 GLY110 GLY111 LEU112 GLU113 LEU114 ILE115 GLU116 THR117 GLY118 HIS119 GLN120 ALA121 LEU122 ILE123 GLU124 LYS125 GLY126 PRO127 ARG128 LYS129 VAL130 SER131 PRO132 PHE133 PHE134 VAL135 PRO136 SER137 THR138 ILE139 VAL140 ASN141 MET142 ILE143 ALA144 GLY145 ASN146 LEU147 SER148 ILE149 MET150 ARG151 GLY152 LEU153 ARG154 GLY155 PRO156 ASN157 ILE158 ALA159 ILE160 SER161 THR162 ALA163 CYS164 THR165 THR166 GLY167 LEU168 HIS169 ASN170 ILE171 GLY172 HIS173 ALA174 ALA175 ARG176 MET177 ILE178 ALA179 TYR180 GLY181 ASP182 ALA183 ASP184 ALA185 MET186 VAL187 ALA188 GLY189 GLY190 ALA191 GLU192 LYS193 ALA194 SER195 THR196 PRO197 LEU198 GLY199 MET200 ALA201 GLY202 PHE203 GLY204 ALA205 ALA206 LYS207 ALA208 LEU209 SER210 THR211 ARG212 ASN213 ASP214 GLU215 PRO216 GLN217 LYS218 ALA219 SER220 ARG221 PRO222 TRP223 ASP224 LYS225 ASP226 ARG227 ASP228 GLY229 PHE230 VAL231 LEU232 GLY233 ASP234 GLY235 ALA236 GLY237 ILE238 MET239 VAL240 LEU241 GLU242 GLU243 TYR244 GLU245 HIS246 ALA247 LYS248 ALA249 ARG250 GLY251 ALA252 LYS253 ILE254 TYR255 ALA256 GLU257 VAL258 VAL259 GLY260 PHE261 GLY262 MET263 SER264 GLY265 ASP266 ALA267 TYR268 HIS269 MET270 THR271 SER272 PRO273 SER274 GLU275 ASP276 GLY277 SER278 GLY279 GLY280 ALA281 LEU282 ALA283 MET284 GLU285 ALA286 ALA287 MET288 ARG289 ASP290 ALA291 GLY292 VAL293 THR294 GLY295 GLU296 GLN297 ILE298 GLY299 TYR300 VAL301 ASN302 ALA303 HIS304 GLY305 THR306 SER307 THR308 PRO309 ALA310 GLY311 ASP312 VAL313 ALA314 GLU315 VAL316 LYS317 GLY318 ILE319 LYS320 ARG321 ALA322 LEU323 GLY324 GLU325 ALA326 GLY327 THR328 LYS329 GLN330 VAL331 LEU332 VAL333 SER334 SER335 THR336 LYS337 SER338 MET339 THR340 GLY341 HIS342 LEU343 LEU344 GLY345 ALA346 ALA347 GLY348 SER349 VAL350 GLU351 ALA352 ILE353 ILE354 THR355 VAL356 MET357 SER358 LEU359 VAL360 ASP361 GLN362 MET363 VAL364 PRO365 PRO366 THR367 ILE368 ASN369 LEU370 ASP371 ASN372 PRO373 GLU374 GLU375 GLY376 LEU377 GLY378 VAL379 ASP380 LEU381 VAL382 PRO383 HIS384 VAL385 ALA386 ARG387 LYS388 VAL389 GLU390 SER391 MET392 GLU393 TYR394 ALA395 MET396 CYS397 ASN398 SER399 PHE400 GLY401 PHE402 GLY403 GLY404 THR405 ASN406 GLY407 SER408 LEU409 ILE410 PHE411 LYS412 ARG413 MET414
Unit 3 LYS3 ARG4 ARG5 VAL6 VAL7 VAL8 THR9 GLY10 MET11 GLY12 MET13 LEU14 SER15 PRO16 VAL17 GLY18 ASN19 THR20 VAL21 GLU22 SER23 SER24 TRP25 LYS26 ALA27 LEU28 LEU29 ALA30 GLY31 GLN32 SER33 GLY34 ILE35 VAL36 ASN37 ILE38 GLU39 HIS40 PHE41 ASP42 THR43 THR44 ASN45 PHE46 SER47 THR48 ARG49 PHE50 ALA51 GLY52 LEU53 VAL54 LYS55 GLY56 PHE57 ASP58 CYS59 GLU60 GLN61 TYR62 MET63 SER64 LYS65 LYS66 ASP67 ALA68 ARG69 LYS70 MET71 ASP72 LEU73 PHE74 ILE75 GLN76 TYR77 GLY78 ILE79 ALA80 ALA81 GLY82 ILE83 GLN84 ALA85 LEU86 GLU87 ASP88 SER89 GLY90 LEU91 GLU92 VAL93 ASN94 GLU95 GLU96 ASN97 ALA98 ALA99 ARG100 ILE101 GLY102 VAL103 ALA104 ILE105 GLY106 SER107 GLY108 ILE109 GLY110 GLY111 LEU112 GLU113 LEU114 ILE115 GLU116 THR117 GLY118 HIS119 GLN120 ALA121 LEU122 ILE123 GLU124 LYS125 GLY126 PRO127 ARG128 LYS129 VAL130 SER131 PRO132 PHE133 PHE134 VAL135 PRO136 SER137 THR138 ILE139 VAL140 ASN141 MET142 ILE143 ALA144 GLY145 ASN146 LEU147 SER148 ILE149 MET150 ARG151 GLY152 LEU153 ARG154 GLY155 PRO156 ASN157 ILE158 ALA159 ILE160 SER161 THR162 ALA163 CYS164 THR165 THR166 GLY167 LEU168 HIS169 ASN170 ILE171 GLY172 HIS173 ALA174 ALA175 ARG176 MET177 ILE178 ALA179 TYR180 GLY181 ASP182 ALA183 ASP184 ALA185 MET186 VAL187 ALA188 GLY189 GLY190 ALA191 GLU192 LYS193 ALA194 SER195 THR196 PRO197 LEU198 GLY199 MET200 ALA201 GLY202 PHE203 GLY204 ALA205 ALA206 LYS207 ALA208 LEU209 SER210 THR211 ARG212 ASN213 ASP214 GLU215 PRO216 GLN217 LYS218 ALA219 SER220 ARG221 PRO222 TRP223 ASP224 LYS225 ASP226 ARG227 ASP228 GLY229 PHE230 VAL231 LEU232 GLY233 ASP234 GLY235 ALA236 GLY237 ILE238 MET239 VAL240 LEU241 GLU242 GLU243 TYR244 GLU245 HIS246 ALA247 LYS248 ALA249 ARG250 GLY251 ALA252 LYS253 ILE254 TYR255 ALA256 GLU257 VAL258 VAL259 GLY260 PHE261 GLY262 MET263 SER264 GLY265 ASP266 ALA267 TYR268 HIS269 MET270 THR271 SER272 PRO273 SER274 GLU275 ASP276 GLY277 SER278 GLY279 GLY280 ALA281 LEU282 ALA283 MET284 GLU285 ALA286 ALA287 MET288 ARG289 ASP290 ALA291 GLY292 VAL293 THR294 GLY295 GLU296 GLN297 ILE298 GLY299 TYR300 VAL301 ASN302 ALA303 HIS304 GLY305 THR306 SER307 THR308 PRO309 ALA310 GLY311 ASP312 VAL313 ALA314 GLU315 VAL316 LYS317 GLY318 ILE319 LYS320 ARG321 ALA322 LEU323 GLY324 GLU325 ALA326 GLY327 THR328 LYS329 GLN330 VAL331 LEU332 VAL333 SER334 SER335 THR336 LYS337 SER338 MET339 THR340 GLY341 HIS342 LEU343 LEU344 GLY345 ALA346 ALA347 GLY348 SER349 VAL350 GLU351 ALA352 ILE353 ILE354 THR355 VAL356 MET357 SER358 LEU359 VAL360 ASP361 GLN362 MET363 VAL364 PRO365 PRO366 THR367 ILE368 ASN369 LEU370 ASP371 ASN372 PRO373 GLU374 GLU375 GLY376 LEU377 GLY378 VAL379 ASP380 LEU381 VAL382 PRO383 HIS384 VAL385 ALA386 ARG387 LYS388 VAL389 GLU390 SER391 MET392 GLU393 TYR394 ALA395 MET396 CYS397 ASN398 SER399 PHE400 GLY401 PHE402 GLY403 GLY404 THR405 ASN406 GLY407 SER408 LEU409 ILE410 PHE411 LYS412 ARG413 MET414
Unit 4 SER2 LYS3 ARG4 ARG5 VAL6 VAL7 VAL8 THR9 GLY10 MET11 GLY12 MET13 LEU14 SER15 PRO16 VAL17 GLY18 ASN19 THR20 VAL21 GLU22 SER23 SER24 TRP25 LYS26 ALA27 LEU28 LEU29 ALA30 GLY31 GLN32 SER33 GLY34 ILE35 VAL36 ASN37 ILE38 GLU39 HIS40 PHE41 ASP42 THR43 THR44 ASN45 PHE46 SER47 THR48 ARG49 PHE50 ALA51 GLY52 LEU53 VAL54 LYS55 GLY56 PHE57 ASP58 CYS59 GLU60 GLN61 TYR62 MET63 SER64 LYS65 LYS66 ASP67 ALA68 ARG69 LYS70 MET71 ASP72 LEU73 PHE74 ILE75 GLN76 TYR77 GLY78 ILE79 ALA80 ALA81 GLY82 ILE83 GLN84 ALA85 LEU86 GLU87 ASP88 SER89 GLY90 LEU91 GLU92 VAL93 ASN94 GLU95 GLU96 ASN97 ALA98 ALA99 ARG100 ILE101 GLY102 VAL103 ALA104 ILE105 GLY106 SER107 GLY108 ILE109 GLY110 GLY111 LEU112 GLU113 LEU114 ILE115 GLU116 THR117 GLY118 HIS119 GLN120 ALA121 LEU122 ILE123 GLU124 LYS125 GLY126 PRO127 ARG128 LYS129 VAL130 SER131 PRO132 PHE133 PHE134 VAL135 PRO136 SER137 THR138 ILE139 VAL140 ASN141 MET142 ILE143 ALA144 GLY145 ASN146 LEU147 SER148 ILE149 MET150 ARG151 GLY152 LEU153 ARG154 GLY155 PRO156 ASN157 ILE158 ALA159 ILE160 SER161 THR162 ALA163 CYS164 THR165 THR166 GLY167 LEU168 HIS169 ASN170 ILE171 GLY172 HIS173 ALA174 ALA175 ARG176 MET177 ILE178 ALA179 TYR180 GLY181 ASP182 ALA183 ASP184 ALA185 MET186 VAL187 ALA188 GLY189 GLY190 ALA191 GLU192 LYS193 ALA194 SER195 THR196 PRO197 LEU198 GLY199 MET200 ALA201 GLY202 PHE203 GLY204 ALA205 ALA206 LYS207 ALA208 LEU209 SER210 THR211 ARG212 ASN213 ASP214 GLU215 PRO216 GLN217 LYS218 ALA219 SER220 ARG221 PRO222 TRP223 ASP224 LYS225 ASP226 ARG227 ASP228 GLY229 PHE230 VAL231 LEU232 GLY233 ASP234 GLY235 ALA236 GLY237 ILE238 MET239 VAL240 LEU241 GLU242 GLU243 TYR244 GLU245 HIS246 ALA247 LYS248 ALA249 ARG250 GLY251 ALA252 LYS253 ILE254 TYR255 ALA256 GLU257 VAL258 VAL259 GLY260 PHE261 GLY262 MET263 SER264 GLY265 ASP266 ALA267 TYR268 HIS269 MET270 THR271 SER272 PRO273 SER274 GLU275 ASP276 GLY277 SER278 GLY279 GLY280 ALA281 LEU282 ALA283 MET284 GLU285 ALA286 ALA287 MET288 ARG289 ASP290 ALA291 GLY292 VAL293 THR294 GLY295 GLU296 GLN297 ILE298 GLY299 TYR300 VAL301 ASN302 ALA303 HIS304 GLY305 THR306 SER307 THR308 PRO309 ALA310 GLY311 ASP312 VAL313 ALA314 GLU315 VAL316 LYS317 GLY318 ILE319 LYS320 ARG321 ALA322 LEU323 GLY324 GLU325 ALA326 GLY327 THR328 LYS329 GLN330 VAL331 LEU332 VAL333 SER334 SER335 THR336 LYS337 SER338 MET339 THR340 GLY341 HIS342 LEU343 LEU344 GLY345 ALA346 ALA347 GLY348 SER349 VAL350 GLU351 ALA352 ILE353 ILE354 THR355 VAL356 MET357 SER358 LEU359 VAL360 ASP361 GLN362 MET363 VAL364 PRO365 PRO366 THR367 ILE368 ASN369 LEU370 ASP371 ASN372 PRO373 GLU374 GLU375 GLY376 LEU377 GLY378 VAL379 ASP380 LEU381 VAL382 PRO383 HIS384 VAL385 ALA386 ARG387 LYS388 VAL389 GLU390 SER391 MET392 GLU393 TYR394 ALA395 MET396 CYS397 ASN398 SER399 PHE400 GLY401 PHE402 GLY403 GLY404 THR405 ASN406 GLY407 SER408 LEU409 ILE410 PHE411 LYS412 ARG413 MET414

Ligands
Unit 5 ACT501
Unit 6 GOL501
Unit 7 ACT501 GOL502

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany