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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE PARALLEL DOUBLE-STRANDED HELIX OF P
Keywords PARALLEL DOUBLE HELIX, POLY(A), MRNA, PABP, POLY(A) MOTIF, R
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4JRD     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 11 239 0
2  RNA    B 11 239 0
3  Ligand   RNA (5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')  A 11 0 11
4  Ligand   RNA (5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')  B 7 0 7
5 Water     76 0 76
total       116 478 94

Nucleic acids
Unit 1 A1 A2 A3 A4 A5 A6 A7 A8 A9 A10 A11
Unit 2 A1 A2 A3 A4 A5 A6 A7 A8 A9 A10 A11

Ligands
Unit 3 NH4101 NH4102 NH4103 NH4104 NH4105 NH4106 NH4107 NH4108 NH4109 NH4110 NH4111
Unit 4 NH4101 NH4102 NH4103 NH4104 NH4105 NH4106 NH4107

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany