4JPJ - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE GERMLINE-TARGETING HIV-1 GP120 ENGI OUTER DOMAIN, EOD-GT6
• Keywords: HIV-1 GP120, CD4 BINDING SITE, VRC01-LIKE BROADLY NEUTRALIZI ANTIBODIES, VIRAL PROTEIN
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4JPJ	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	GERMLINE-TARGETING HIV-1 GP120 ENGINEERED OUTER D EOD-GT6	A	170	1308	0
2	Protein	GERMLINE-TARGETING HIV-1 GP120 ENGINEERED OUTER D EOD-GT6	B	169	1301	0
3	Protein	GERMLINE-TARGETING HIV-1 GP120 ENGINEERED OUTER D EOD-GT6	C	157	1210	0
4	Protein	GERMLINE-TARGETING HIV-1 GP120 ENGINEERED OUTER D EOD-GT6	D	162	1252	0
5	Ligand	GERMLINE-TARGETING HIV-1 GP120 ENGINEERED OUTER D EOD-GT6	A	2	0	28
6	Ligand	GERMLINE-TARGETING HIV-1 GP120 ENGINEERED OUTER D EOD-GT6	B	2	0	28
7	Ligand	GERMLINE-TARGETING HIV-1 GP120 ENGINEERED OUTER D EOD-GT6	C	2	0	28
8	Ligand	GERMLINE-TARGETING HIV-1 GP120 ENGINEERED OUTER D EOD-GT6	D	2	0	28
9	Water			45	0	45
total				711	5071	157

Proteins

Unit 1	ASP 1 THR 2 ILE 3 THR 4 LEU 5 PRO 6 CYS 7 ARG 8 PRO 9 ALA 10 PRO 11 PRO 12 PRO 13 HIS 14 CYS 15 SER 16 SER 17 ASN 18 ILE 19 THR 20 GLY 21 LEU 22 ILE 23 LEU 24 THR 25 ARG 26 ASP 27 GLY 28 GLY 29 VAL 30 SER 31 ASN 32 ASP 33 GLU 34 THR 35 GLU 36 ILE 37 PHE 38 ARG 39 PRO 40 SER 41 GLY 42 GLY 43 ASP 44 MET 45 ARG 46 ASP 47 ILE 48 ALA 49 ARG 50 CYS 51 GLN 52 ILE 53 ALA 54 GLY 55 THR 56 VAL 57 VAL 58 SER 59 THR 60 GLN 61 LEU 62 PHE 63 LEU 64 ASN 65 GLY 66 SER 67 LEU 68 ALA 69 GLU 70 GLU 71 GLU 72 VAL 73 VAL 74 ILE 75 ARG 76 SER 77 VAL 78 ASP 79 PHE 80 ARG 81 ASP 82 ASN 83 ALA 84 LYS 85 SER 86 ILE 87 CYS 88 VAL 89 GLN 90 LEU 91 ASP 92 THR 93 SER 94 VAL 95 GLU 96 ILE 97 ASP 98 CYS 99 THR 100 GLY 101 ALA 102 GLY 103 HIS 104 CYS 105 ASP 106 ILE 107 SER 108 ARG 109 ALA 110 LYS 111 TRP 112 ASP 113 ASN 114 THR 115 LEU 116 LYS 117 GLN 118 ILE 119 ALA 120 SER 121 LYS 122 LEU 123 ARG 124 GLU 125 GLN 126 PHE 127 GLY 128 ASP 129 ARG 130 THR 131 ILE 132 ILE 133 PHE 134 LYS 135 GLN 136 SER 137 SER 138 GLY 139 GLY 140 ASP 141 PRO 142 GLU 143 PHE 144 VAL 145 THR 146 HIS 147 SER 148 PHE 149 ASN 150 CYS 151 GLY 152 GLY 153 GLU 154 PHE 155 PHE 156 TYR 157 CYS 158 ASP 159 SER 160 THR 161 GLN 162 LEU 163 PHE 164 ASP 165 SER 166 THR 167 TRP 168 PHE 169 ASP 170
Unit 2	ASP 1 THR 2 ILE 3 THR 4 LEU 5 PRO 6 CYS 7 ARG 8 PRO 9 ALA 10 PRO 11 PRO 12 PRO 13 HIS 14 CYS 15 SER 16 SER 17 ASN 18 ILE 19 THR 20 GLY 21 LEU 22 ILE 23 LEU 24 THR 25 ARG 26 ASP 27 GLY 28 GLY 29 VAL 30 SER 31 ASN 32 ASP 33 GLU 34 THR 35 GLU 36 ILE 37 PHE 38 ARG 39 PRO 40 SER 41 GLY 42 GLY 43 ASP 44 MET 45 ARG 46 ASP 47 ILE 48 ALA 49 ARG 50 CYS 51 GLN 52 ILE 53 ALA 54 GLY 55 THR 56 VAL 57 VAL 58 SER 59 THR 60 GLN 61 LEU 62 PHE 63 LEU 64 ASN 65 GLY 66 SER 67 LEU 68 ALA 69 GLU 70 GLU 71 GLU 72 VAL 73 VAL 74 ILE 75 ARG 76 SER 77 VAL 78 ASP 79 PHE 80 ARG 81 ASP 82 ASN 83 ALA 84 LYS 85 SER 86 ILE 87 CYS 88 VAL 89 GLN 90 LEU 91 ASP 92 THR 93 SER 94 VAL 95 GLU 96 ILE 97 ASP 98 CYS 99 THR 100 GLY 101 ALA 102 GLY 103 HIS 104 CYS 105 ASP 106 ILE 107 SER 108 ARG 109 ALA 110 LYS 111 TRP 112 ASP 113 ASN 114 THR 115 LEU 116 LYS 117 GLN 118 ILE 119 ALA 120 SER 121 LYS 122 LEU 123 ARG 124 GLU 125 GLN 126 PHE 127 GLY 128 ASP 129 ARG 130 THR 131 ILE 132 ILE 133 PHE 134 LYS 135 GLN 136 SER 137 SER 138 PRO 142 GLU 143 PHE 144 VAL 145 THR 146 HIS 147 SER 148 PHE 149 ASN 150 CYS 151 GLY 152 GLY 153 GLU 154 PHE 155 PHE 156 TYR 157 CYS 158 ASP 159 SER 160 THR 161 GLN 162 LEU 163 PHE 164 ASP 165 SER 166 THR 167 TRP 168 PHE 169 ASP 170 SER 171 THR 172
Unit 3	ASP 1 THR 2 ILE 3 THR 4 LEU 5 PRO 6 CYS 7 ARG 8 PRO 9 ALA 10 PRO 11 PRO 12 PRO 13 HIS 14 CYS 15 SER 16 SER 17 ASN 18 ILE 19 THR 20 GLY 21 LEU 22 ILE 23 LEU 24 THR 25 ARG 26 ASP 27 GLY 28 GLY 29 VAL 30 SER 31 ASN 32 ASP 33 GLU 34 THR 35 GLU 36 ILE 37 PHE 38 ARG 39 PRO 40 SER 41 CYS 51 GLN 52 ILE 53 ALA 54 GLY 55 THR 56 VAL 57 VAL 58 SER 59 THR 60 GLN 61 LEU 62 PHE 63 LEU 64 ASN 65 GLY 66 SER 67 LEU 68 ALA 69 GLU 70 GLU 71 GLU 72 VAL 73 VAL 74 ILE 75 ARG 76 SER 77 VAL 78 ASP 79 PHE 80 ARG 81 ASP 82 ASN 83 ALA 84 LYS 85 SER 86 ILE 87 CYS 88 VAL 89 GLN 90 LEU 91 ASP 92 THR 93 SER 94 VAL 95 GLU 96 ILE 97 ASP 98 CYS 99 THR 100 GLY 101 ALA 102 GLY 103 HIS 104 CYS 105 ASP 106 ILE 107 SER 108 ARG 109 ALA 110 LYS 111 TRP 112 ASP 113 ASN 114 THR 115 LEU 116 LYS 117 GLN 118 ILE 119 ALA 120 SER 121 LYS 122 LEU 123 ARG 124 GLU 125 GLN 126 PHE 127 GLY 128 ASP 129 ARG 130 THR 131 ILE 132 ILE 133 PHE 134 LYS 135 GLN 136 VAL 145 THR 146 HIS 147 SER 148 PHE 149 ASN 150 CYS 151 GLY 152 GLY 153 GLU 154 PHE 155 PHE 156 TYR 157 CYS 158 ASP 159 SER 160 THR 161 GLN 162 LEU 163 PHE 164 ASP 165 SER 166 THR 167 TRP 168 PHE 169 ASP 170 SER 171 THR 172 GLY 173 THR 174
Unit 4	ASP 1 THR 2 ILE 3 THR 4 LEU 5 PRO 6 CYS 7 ARG 8 PRO 9 ALA 10 PRO 11 PRO 12 PRO 13 HIS 14 CYS 15 SER 16 SER 17 ASN 18 ILE 19 THR 20 GLY 21 LEU 22 ILE 23 LEU 24 THR 25 ARG 26 ASP 27 ASP 33 GLU 34 THR 35 GLU 36 ILE 37 PHE 38 ARG 39 PRO 40 SER 41 GLY 42 GLY 43 ASP 44 MET 45 CYS 51 GLN 52 ILE 53 ALA 54 GLY 55 THR 56 VAL 57 VAL 58 SER 59 THR 60 GLN 61 LEU 62 PHE 63 LEU 64 ASN 65 GLY 66 SER 67 LEU 68 ALA 69 GLU 70 GLU 71 GLU 72 VAL 73 VAL 74 ILE 75 ARG 76 SER 77 VAL 78 ASP 79 PHE 80 ARG 81 ASP 82 ASN 83 ALA 84 LYS 85 SER 86 ILE 87 CYS 88 VAL 89 GLN 90 LEU 91 ASP 92 THR 93 SER 94 VAL 95 GLU 96 ILE 97 ASP 98 CYS 99 THR 100 GLY 101 ALA 102 GLY 103 HIS 104 CYS 105 ASP 106 ILE 107 SER 108 ARG 109 ALA 110 LYS 111 TRP 112 ASP 113 ASN 114 THR 115 LEU 116 LYS 117 GLN 118 ILE 119 ALA 120 SER 121 LYS 122 LEU 123 ARG 124 GLU 125 GLN 126 PHE 127 GLY 128 ASP 129 ARG 130 THR 131 ILE 132 ILE 133 PHE 134 LYS 135 GLN 136 SER 137 SER 138 ASP 141 PRO 142 GLU 143 PHE 144 VAL 145 THR 146 HIS 147 SER 148 PHE 149 ASN 150 CYS 151 GLY 152 GLY 153 GLU 154 PHE 155 PHE 156 TYR 157 CYS 158 ASP 159 SER 160 THR 161 GLN 162 LEU 163 PHE 164 ASP 165 SER 166 THR 167 TRP 168 PHE 169 ASP 170 SER 171 THR 172 GLY 173 THR 174

Ligands

Unit 5	NAG 201 NAG 202
Unit 6	NAG 201 NAG 202
Unit 7	NAG 201 NAG 202
Unit 8	NAG 201 NAG 202