4JFD - Sequence, Chains, Asymmetric and Biological Units

• Title: PRESERVATION OF PEPTIDE SPECIFICITY DURING TCR-MHC CONTACT D AFFINITY ENHANCEMENT OF A MELANOMA-SPECIFIC TCR
• Keywords: HLA, TCR, MELANOMA, IMMUNE SYSTEM, HIGH AFFINITY, IMMUNOGLOB
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4JFD	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein		A	276	2253	0
2	Protein	BETA-2-MICROGLOBULIN	B	100	837	0
3	Protein	MELANOMA PEPTIDE	C	10	70	0
4	Protein	HIGH AFFINITY TCR ALPHA CHAIN	D	196	1525	0
5	Protein	HIGH AFFINITY TCR BETA CHAIN	E	245	1944	0
6	Ligand		A	6	0	36
7	Ligand	HIGH AFFINITY TCR BETA CHAIN	E	6	0	30
8	Water			125	0	125
total				964	6629	191

Proteins

Unit 1	GLY 1 SER 2 HIS 3 SER 4 MET 5 ARG 6 TYR 7 PHE 8 PHE 9 THR 10 SER 11 VAL 12 SER 13 ARG 14 PRO 15 GLY 16 ARG 17 GLY 18 GLU 19 PRO 20 ARG 21 PHE 22 ILE 23 ALA 24 VAL 25 GLY 26 TYR 27 VAL 28 ASP 29 ASP 30 THR 31 GLN 32 PHE 33 VAL 34 ARG 35 PHE 36 ASP 37 SER 38 ASP 39 ALA 40 ALA 41 SER 42 GLN 43 ARG 44 MET 45 GLU 46 PRO 47 ARG 48 ALA 49 PRO 50 TRP 51 ILE 52 GLU 53 GLN 54 GLU 55 GLY 56 PRO 57 GLU 58 TYR 59 TRP 60 ASP 61 GLY 62 GLU 63 THR 64 ARG 65 LYS 66 VAL 67 LYS 68 ALA 69 HIS 70 SER 71 GLN 72 THR 73 HIS 74 ARG 75 VAL 76 ASP 77 LEU 78 GLY 79 THR 80 LEU 81 ARG 82 GLY 83 TYR 84 TYR 85 ASN 86 GLN 87 SER 88 GLU 89 ALA 90 GLY 91 SER 92 HIS 93 THR 94 VAL 95 GLN 96 ARG 97 MET 98 TYR 99 GLY 100 CYS 101 ASP 102 VAL 103 GLY 104 SER 105 ASP 106 TRP 107 ARG 108 PHE 109 LEU 110 ARG 111 GLY 112 TYR 113 HIS 114 GLN 115 TYR 116 ALA 117 TYR 118 ASP 119 GLY 120 LYS 121 ASP 122 TYR 123 ILE 124 ALA 125 LEU 126 LYS 127 GLU 128 ASP 129 LEU 130 ARG 131 SER 132 TRP 133 THR 134 ALA 135 ALA 136 ASP 137 MET 138 ALA 139 ALA 140 GLN 141 THR 142 THR 143 LYS 144 HIS 145 LYS 146 TRP 147 GLU 148 ALA 149 ALA 150 HIS 151 VAL 152 ALA 153 GLU 154 GLN 155 LEU 156 ARG 157 ALA 158 TYR 159 LEU 160 GLU 161 GLY 162 THR 163 CYS 164 VAL 165 GLU 166 TRP 167 LEU 168 ARG 169 ARG 170 TYR 171 LEU 172 GLU 173 ASN 174 GLY 175 LYS 176 GLU 177 THR 178 LEU 179 GLN 180 ARG 181 THR 182 ASP 183 ALA 184 PRO 185 LYS 186 THR 187 HIS 188 MET 189 THR 190 HIS 191 HIS 192 ALA 193 VAL 194 SER 195 ASP 196 HIS 197 GLU 198 ALA 199 THR 200 LEU 201 ARG 202 CYS 203 TRP 204 ALA 205 LEU 206 SER 207 PHE 208 TYR 209 PRO 210 ALA 211 GLU 212 ILE 213 THR 214 LEU 215 THR 216 TRP 217 GLN 218 ARG 219 ASP 220 GLY 221 GLU 222 ASP 223 GLN 224 THR 225 GLN 226 ASP 227 THR 228 GLU 229 LEU 230 VAL 231 GLU 232 THR 233 ARG 234 PRO 235 ALA 236 GLY 237 ASP 238 GLY 239 THR 240 PHE 241 GLN 242 LYS 243 TRP 244 ALA 245 ALA 246 VAL 247 VAL 248 VAL 249 PRO 250 SER 251 GLY 252 GLN 253 GLU 254 GLN 255 ARG 256 TYR 257 THR 258 CYS 259 HIS 260 VAL 261 GLN 262 HIS 263 GLU 264 GLY 265 LEU 266 PRO 267 LYS 268 PRO 269 LEU 270 THR 271 LEU 272 ARG 273 TRP 274 GLU 275 PRO 276
Unit 2	MET 0 ILE 1 GLN 2 ARG 3 THR 4 PRO 5 LYS 6 ILE 7 GLN 8 VAL 9 TYR 10 SER 11 ARG 12 HIS 13 PRO 14 ALA 15 GLU 16 ASN 17 GLY 18 LYS 19 SER 20 ASN 21 PHE 22 LEU 23 ASN 24 CYS 25 TYR 26 VAL 27 SER 28 GLY 29 PHE 30 HIS 31 PRO 32 SER 33 ASP 34 ILE 35 GLU 36 VAL 37 ASP 38 LEU 39 LEU 40 LYS 41 ASN 42 GLY 43 GLU 44 ARG 45 ILE 46 GLU 47 LYS 48 VAL 49 GLU 50 HIS 51 SER 52 ASP 53 LEU 54 SER 55 PHE 56 SER 57 LYS 58 ASP 59 TRP 60 SER 61 PHE 62 TYR 63 LEU 64 LEU 65 TYR 66 TYR 67 THR 68 GLU 69 PHE 70 THR 71 PRO 72 THR 73 GLU 74 LYS 75 ASP 76 GLU 77 TYR 78 ALA 79 CYS 80 ARG 81 VAL 82 ASN 83 HIS 84 VAL 85 THR 86 LEU 87 SER 88 GLN 89 PRO 90 LYS 91 ILE 92 VAL 93 LYS 94 TRP 95 ASP 96 ARG 97 ASP 98 MET 99
Unit 3	GLU 1 LEU 2 ALA 3 ALA 4 ILE 5 GLY 6 ILE 7 LEU 8 THR 9 VAL 10
Unit 4	LYS 1 GLN 2 GLU 3 VAL 4 GLU 5 GLN 6 ASN 7 SER 8 GLY 9 PRO 10 LEU 11 SER 12 VAL 13 PRO 14 GLU 15 GLY 16 ALA 17 ILE 18 ALA 19 SER 20 LEU 21 ASN 22 CYS 23 THR 24 TYR 25 SER 26 PHE 27 LEU 28 GLY 29 SER 30 GLN 31 SER 32 PHE 33 PHE 34 TRP 35 TYR 36 ARG 37 GLN 38 TYR 39 SER 40 GLY 41 LYS 42 SER 43 PRO 44 GLU 45 LEU 46 ILE 47 MET 48 PHE 49 THR 50 TYR 51 ARG 52 GLU 53 GLY 54 ASP 55 LYS 56 GLU 57 ASP 58 GLY 59 ARG 60 PHE 61 THR 62 ALA 63 GLN 64 LEU 65 ASN 66 LYS 67 ALA 68 SER 69 GLN 70 HIS 71 VAL 72 SER 73 LEU 74 LEU 75 ILE 76 ARG 77 ASP 78 SER 79 GLN 80 PRO 81 SER 82 ASP 83 SER 84 ALA 85 THR 86 TYR 87 LEU 88 CYS 89 ALA 90 VAL 91 ASN 92 ASP 93 GLY 94 GLY 95 ARG 96 LEU 97 THR 98 PHE 99 GLY 100 ASP 101 GLY 102 THR 103 THR 104 LEU 105 THR 106 VAL 107 LYS 108 PRO 109 ASN 110 ILE 111 GLN 112 ASN 113 PRO 114 ASP 115 PRO 116 ALA 117 VAL 118 TYR 119 GLN 120 LEU 121 ARG 122 ASP 123 SER 124 LYS 125 SER 126 SER 127 ASP 128 LYS 129 SER 130 VAL 131 CYS 132 LEU 133 PHE 134 THR 135 ASP 136 PHE 137 ASP 138 SER 139 GLN 140 THR 141 ASN 142 VAL 143 SER 144 GLN 145 SER 146 LYS 147 ASP 148 SER 149 ASP 150 VAL 151 TYR 152 ILE 153 THR 154 ASP 155 LYS 156 CYS 157 VAL 158 LEU 159 ASP 160 MET 161 ARG 162 SER 163 MET 164 ASP 165 PHE 166 LYS 167 SER 168 ASN 169 SER 170 ALA 171 VAL 172 ALA 173 TRP 174 SER 175 ASN 176 LYS 177 SER 178 ASP 179 PHE 180 ALA 181 CYS 182 ALA 183 ASN 184 ALA 185 PHE 186 ASN 187 ASN 188 SER 189 ILE 190 ILE 191 PRO 192 GLU 193 ASP 194 THR 195 PHE 196
Unit 5	MET 0 SER 1 GLN 2 THR 3 ILE 4 HIS 5 GLN 6 TRP 7 PRO 8 ALA 9 THR 10 LEU 11 VAL 12 GLN 13 PRO 14 VAL 15 GLY 16 SER 17 PRO 18 LEU 19 SER 20 LEU 21 GLU 22 CYS 23 THR 24 VAL 25 GLU 26 GLY 27 THR 28 SER 29 ASN 30 PRO 31 ASN 32 LEU 33 TYR 34 TRP 35 TYR 36 ARG 37 GLN 38 ALA 39 ALA 40 GLY 41 ARG 42 GLY 43 PRO 44 GLN 45 LEU 46 LEU 47 PHE 48 TYR 49 TRP 50 GLY 51 PRO 52 PHE 53 GLY 54 GLN 55 ILE 56 SER 57 SER 58 GLU 59 VAL 60 PRO 61 GLN 62 ASN 63 LEU 64 SER 65 ALA 66 SER 67 ARG 68 PRO 69 GLN 70 ASP 71 ARG 72 GLN 73 PHE 74 ILE 75 LEU 76 SER 77 SER 78 LYS 79 LYS 80 LEU 81 LEU 82 LEU 83 SER 84 ASP 85 SER 86 GLY 87 PHE 88 TYR 89 LEU 90 CYS 91 ALA 92 TRP 93 SER 94 GLU 95 THR 96 GLY 97 LEU 98 GLY 99 MET 100 GLY 101 GLY 102 TRP 103 GLN 104 PHE 105 GLY 106 GLU 107 GLY 108 SER 109 ARG 110 LEU 111 THR 112 VAL 113 LEU 114 GLU 115 ASP 116 LEU 117 LYS 118 ASN 119 VAL 120 PHE 121 PRO 122 PRO 123 GLU 124 VAL 125 ALA 126 VAL 127 PHE 128 GLU 129 PRO 130 SER 131 GLU 132 ALA 133 GLU 134 ILE 135 SER 136 HIS 137 THR 138 GLN 139 LYS 140 ALA 141 THR 142 LEU 143 VAL 144 CYS 145 LEU 146 ALA 147 THR 148 GLY 149 PHE 150 TYR 151 PRO 152 ASP 153 HIS 154 VAL 155 GLU 156 LEU 157 SER 158 TRP 159 TRP 160 VAL 161 ASN 162 GLY 163 LYS 164 GLU 165 VAL 166 HIS 167 SER 168 GLY 169 VAL 170 CYS 171 THR 172 ASP 173 PRO 174 GLN 175 PRO 176 LEU 177 LYS 178 GLU 179 GLN 180 PRO 181 ALA 182 LEU 183 ASN 184 ASP 185 SER 186 ARG 187 TYR 188 ALA 189 LEU 190 SER 191 SER 192 ARG 193 LEU 194 ARG 195 VAL 196 SER 197 ALA 198 THR 199 PHE 200 TRP 201 GLN 202 ASP 203 PRO 204 ARG 205 ASN 206 HIS 207 PHE 208 ARG 209 CYS 210 GLN 211 VAL 212 GLN 213 PHE 214 TYR 215 GLY 216 LEU 217 SER 218 GLU 219 ASN 220 ASP 221 GLU 222 TRP 223 THR 224 GLN 225 ASP 226 ARG 227 ALA 228 LYS 229 PRO 230 VAL 231 THR 232 GLN 233 ILE 234 VAL 235 SER 236 ALA 237 GLU 238 ALA 239 TRP 240 GLY 241 ARG 242 ALA 243 ASP 244

Ligands

Unit 6	TAM 301 SO4 302 SO4 303 SO4 304 SO4 305 SO4 306
Unit 7	SO4 301 SO4 302 SO4 303 SO4 304 SO4 305 SO4 306