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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF A CLASS II PREQ1 RIBOSWITCH REVEALS LIGAND RECO A NEW FOLD
Keywords RIBOSWITCH, H-TYPE PSEUDOKNOT, RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4JF2     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 77 1612 32
2  Ligand   PREQ1-II RIBOSWITCH  A 20 0 32
3 Water     152 0 152
total       249 1612 216

Nucleic acids
Unit 1 GTP1 G2 A3 A4 C5 C6 G7 C8 G9 A10 A11 A12 G13 C14 G15 G16 U17 U18 C19 C20 A21 C22 G23 A24 C25 G26 A27 U28 A29 C30 U31 U32 A33 U34 U35 U36 C37 C38 U39 U40 U41 G42 A43 U44 C45 G46 U47 C48 G49 U50 U51 A52 U53 U54 A55 C56 U57 G58 G59 C60 U61 U62 C63 G64 G65 C66 C67 A68 C69 A70 A71 A72 G73 G74 A75 G76 A77

Ligands
Unit 2 PRF101 CS102 CS103 CS104 CS105 CS106 CS107 CS108 CS109 CS110 CS111 CS112 CS113 CS114 CS115 CS116 MG117 MG118 MG119 MG120

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany