4JDT - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF CHIMERIC GERM-LINE PRECURSOR OF NIH45-4 COMPLEX WITH GP120 OF 93TH057 HIV-1
• Keywords: IG FOLD, ANTI HIV, ANTIBODY, IMMUNE SYSTEM COMPLEX, VIRAL PR IMMUNE SYSTEM COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4JDT	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	GP120	G	336	2636	0
2	Protein	FAB HEAVY CHAIN	H	209	1608	0
3	Protein	FAB LIGHT CHAIN	L	206	1586	0
4	Ligand	GP120	G	2	0	19
total				753	5830	19

Proteins

Unit 1	VAL 44 TRP 45 LYS 46 ASP 47 ALA 48 ASP 49 THR 50 THR 51 LEU 52 PHE 53 CYS 54 ALA 55 SER 56 ASP 57 ALA 58 LYS 59 ALA 60 HIS 61 GLU 62 THR 63 GLU 64 CYS 65 HIS 66 ASN 67 VAL 68 TRP 69 ALA 70 THR 71 HIS 72 ALA 73 CYS 74 VAL 75 PRO 76 THR 77 ASP 78 PRO 79 ASN 80 PRO 81 GLN 82 GLU 83 ILE 84 HIS 85 LEU 86 GLU 87 ASN 88 VAL 89 THR 90 GLU 91 ASN 92 PHE 93 ASN 94 MET 95 TRP 96 LYS 97 ASN 98 ASN 99 MET 100 VAL 101 GLU 102 GLN 103 MET 104 GLN 105 GLU 106 ASP 107 VAL 108 ILE 109 SER 110 LEU 111 TRP 112 ASP 113 GLN 114 CYS 115 LEU 116 GLN 117 PRO 118 CYS 119 VAL 120 LYS 121 LEU 122 THR 123 GLY 124 GLY 198 SER 199 VAL 200 ILE 201 LYS 202 GLN 203 ALA 204 CYS 205 PRO 206 LYS 207 ILE 208 SER 209 PHE 210 ASP 211 PRO 212 ILE 213 PRO 214 ILE 215 HIS 216 TYR 217 CYS 218 THR 219 PRO 220 ALA 221 GLY 222 TYR 223 VAL 224 ILE 225 LEU 226 LYS 227 CYS 228 ASN 229 ASP 230 LYS 231 ASN 232 PHE 233 ASN 234 GLY 235 THR 236 GLY 237 PRO 238 CYS 239 LYS 240 ASN 241 VAL 242 SER 243 SER 244 VAL 245 GLN 246 CYS 247 THR 248 HIS 249 GLY 250 ILE 251 LYS 252 PRO 253 VAL 254 VAL 255 SER 256 THR 257 GLN 258 LEU 259 LEU 260 LEU 261 ASN 262 GLY 263 SER 264 LEU 265 ALA 266 GLU 267 GLU 268 GLU 269 ILE 270 ILE 271 ILE 272 ARG 273 SER 274 GLU 275 ASN 276 LEU 277 THR 278 ASN 279 ASN 280 ALA 281 LYS 282 THR 283 ILE 284 ILE 285 VAL 286 HIS 287 LEU 288 ASN 289 LYS 290 SER 291 VAL 292 GLU 293 ILE 294 ASN 295 CYS 296 THR 297 ARG 298 PRO 299 SER 300 ASN 301 ILE 326 ARG 327 LYS 328 ALA 329 TYR 330 CYS 331 GLU 332 ILE 333 ASN 334 GLY 335 THR 336 LYS 337 TRP 338 ASN 339 LYS 340 VAL 341 LEU 342 LYS 343 GLN 344 VAL 345 THR 346 GLU 347 LYS 348 LEU 349 LYS 350 GLU 351 HIS 352 PHE 353 ASN 354 ASN 355 LYS 357 THR 358 ILE 359 ILE 360 PHE 361 GLN 362 PRO 363 PRO 364 SER 365 GLY 366 GLY 367 ASP 368 LEU 369 GLU 370 ILE 371 THR 372 MET 373 HIS 374 HIS 375 PHE 376 ASN 377 CYS 378 ARG 379 GLY 380 GLU 381 PHE 382 PHE 383 TYR 384 CYS 385 ASN 386 THR 387 THR 388 GLN 389 LEU 390 PHE 391 ASN 392 ASN 393 THR 394 CYS 395 ILE 396 ASN 411 GLY 412 THR 413 ILE 414 THR 415 LEU 416 PRO 417 CYS 418 LYS 419 ILE 420 LYS 421 GLN 422 ILE 423 ILE 424 ASN 425 MET 426 TRP 427 GLN 428 GLY 429 THR 430 GLY 431 GLN 432 ALA 433 MET 434 TYR 435 ALA 436 PRO 437 PRO 438 ILE 439 ASP 440 GLY 441 LYS 442 ILE 443 ASN 444 CYS 445 VAL 446 SER 447 ASN 448 ILE 449 THR 450 GLY 451 ILE 452 LEU 453 LEU 454 THR 455 ARG 456 ASP 457 GLY 458 GLY 459 ALA 460 ASN 461 ASN 462 THR 463 SER 464 ASN 465 GLU 466 THR 467 PHE 468 ARG 469 PRO 470 GLY 471 GLY 472 GLY 473 ASN 474 ILE 475 LYS 476 ASP 477 ASN 478 TRP 479 ARG 480 SER 481 GLU 482 LEU 483 TYR 484 LYS 485 TYR 486 LYS 487 VAL 488 VAL 489 GLN 490 ILE 491
Unit 2	VAL 2 GLN 3 LEU 4 VAL 5 GLN 6 SER 7 GLY 8 ALA 9 GLU 10 VAL 11 LYS 12 LYS 13 PRO 14 GLY 15 ALA 16 SER 17 VAL 18 LYS 19 VAL 20 SER 21 CYS 22 LYS 23 ALA 24 SER 25 GLY 26 TYR 27 THR 28 PHE 29 THR 30 GLY 31 TYR 32 TYR 33 MET 34 HIS 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 GLN 43 GLY 44 LEU 45 GLU 46 TRP 47 MET 48 GLY 49 TRP 50 ILE 51 ASN 52 PRO 52A ASN 53 SER 54 GLY 55 GLY 56 THR 57 ASN 58 TYR 59 ALA 60 GLN 61 LYS 62 PHE 63 GLN 64 GLY 65 ARG 66 VAL 67 THR 68 MET 69 THR 70 ARG 71 ASP 72 THR 73 SER 74 ILE 75 SER 76 THR 77 ALA 78 TYR 79 MET 80 GLU 81 LEU 82 SER 82A ARG 82B LEU 82C ARG 83 SER 84 ASP 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 ALA 93 ARG 94 GLY 95 LYS 96 TYR 97 CYS 98 TYR 99D TYR 100 ASN 101 TRP 102 ASP 103 PHE 104 GLN 105 HIS 106 TRP 107 GLY 108 GLN 109 GLY 110 THR 111 LEU 112 VAL 113 THR 114 VAL 115 SER 116 SER 117 ALA 118 SER 119 THR 120 LYS 121 GLY 122 PRO 123 SER 124 VAL 125 PHE 126 PRO 127 LEU 128 ALA 129 PRO 130 THR 139 ALA 140 ALA 141 LEU 142 GLY 143 CYS 144 LEU 145 VAL 146 LYS 147 ASP 148 TYR 149 PHE 150 PRO 151 GLU 152 PRO 153 VAL 154 THR 155 VAL 156 SER 157 TRP 158 ASN 159 SER 160 GLY 161 ALA 162 LEU 163 THR 164 SER 165 GLY 166 VAL 167 HIS 168 THR 169 PHE 170 PRO 171 ALA 172 VAL 173 LEU 174 GLN 175 SER 176 SER 177 GLY 178 LEU 179 TYR 180 SER 181 LEU 182 SER 183 SER 184 VAL 185 VAL 186 THR 187 VAL 188 PRO 189 SER 190 SER 191 SER 192 LEU 193 GLN 196 THR 197 TYR 198 ILE 199 CYS 200 ASN 201 VAL 202 ASN 203 HIS 204 LYS 205 PRO 206 SER 207 ASN 208 THR 209 LYS 210 VAL 211 ASP 212 LYS 213 ARG 214 VAL 215 GLU 216
Unit 3	VAL 3 LEU 4 THR 5 GLN 6 SER 7 PRO 8 ALA 9 THR 10 LEU 11 SER 12 LEU 13 SER 14 PRO 15 GLY 16 GLU 17 THR 18 ALA 19 ILE 20 ILE 21 SER 22 CYS 23 ARG 24 THR 25 SER 26 GLN 27 SER 28 GLY 29 SER 30 LEU 31 ALA 32 TRP 33 TYR 34 GLN 35 GLN 36 ARG 37 PRO 38 GLY 39 GLN 40 ALA 41 PRO 42 ARG 43 LEU 44 VAL 45 ILE 46 TYR 47 SER 48 GLY 49 SER 50 THR 51 ARG 52 ALA 53 ALA 54 GLY 55 ILE 56 PRO 57 ASP 58 ARG 59 PHE 60 SER 61 GLY 62 SER 63 ARG 64 TRP 65 GLY 66 ALA 67 ASP 68 TYR 69 ASN 70 LEU 71 SER 72 ILE 73 SER 74 ASN 75 LEU 76 GLU 77 SER 78 GLY 79 ASP 80 PHE 81 GLY 82 VAL 83 TYR 84 TYR 85 CYS 86 GLN 87 GLN 88 TYR 89 GLU 90 PHE 91 PHE 92 GLY 93 GLN 94 GLY 95 THR 96 LYS 97 VAL 98 GLN 99 VAL 100 ASP 101 ILE 102 LYS 103 ARG 104 THR 105 VAL 106 ALA 107 ALA 108 PRO 109 SER 110 VAL 111 PHE 112 ILE 113 PHE 114 PRO 115 PRO 116 SER 117 ASP 118 GLU 119 GLN 120 LEU 121 LYS 122 SER 123 GLY 124 THR 125 ALA 126 SER 127 VAL 128 VAL 129 CYS 130 LEU 131 LEU 132 ASN 133 ASN 134 PHE 135 TYR 136 PRO 137 ARG 138 GLU 139 ALA 140 LYS 141 VAL 142 GLN 143 TRP 144 LYS 145 VAL 146 ASP 147 ASN 148 ALA 149 LEU 150 GLN 151 SER 152 GLY 153 ASN 154 SER 155 GLN 156 GLU 157 SER 158 VAL 159 THR 160 GLU 161 GLN 162 ASP 163 SER 164 LYS 165 ASP 166 SER 167 THR 168 TYR 169 SER 170 LEU 171 SER 172 SER 173 THR 174 LEU 175 THR 176 LEU 177 SER 178 LYS 179 ALA 180 ASP 181 TYR 182 GLU 183 LYS 184 HIS 185 LYS 186 VAL 187 TYR 188 ALA 189 CYS 190 GLU 191 VAL 192 THR 193 HIS 194 GLN 195 GLY 196 LEU 197 SER 198 SER 199 PRO 200 VAL 201 THR 202 LYS 203 SER 204 PHE 205 ASN 206 ARG 207 GLY 208

Ligands

Unit 4

SO4 601 NAG 602