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Title | CRYSTAL STRUCTURE OF LIGHT AND DCR3 COMPLEX | |
Keywords | LIGHT, DCR3, TNF, TNFR, TNF14, STRUCTURAL GENOMICS, PSI-BIOL HVEM, N-GLYCOSYLATION, MEMBRANE, SECRETED PROTEIN, CYTOKINE JELLY-ROLL FOLD, BIND TNF RECEPTOR HVEM AND LTBR, LTBR, PRO STRUCTURE INITIATIVE, ATOMS-TO-ANIMALS: THE IMMUNE FUNCTION NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, NYSGRC, I SYSTEM | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 4J6G | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | A | 139 | 1072 | 0 | |
2 | Protein | B | 139 | 1072 | 0 | |
3 | Protein | C | 163 | 1233 | 0 | |
4 | Protein | D | 162 | 1227 | 0 | |
5 | Ligand | E | 4 | 0 | 50 | |
6 | Ligand | A | 1 | 0 | 1 | |
7 | Ligand | B | 1 | 0 | 1 | |
8 | Ligand | C | 1 | 0 | 1 | |
9 | Ligand | D | 2 | 0 | 15 | |
10 | Water | 46 | 0 | 46 | ||
total | 658 | 4604 | 114 |
Unit 1 | VAL92 ASN93 PRO94 ALA95 ALA96 HIS97 LEU98 THR99 GLY100 ALA101 ASN102 SER103 SER104 LEU105 THR106 GLY107 SER108 GLY109 GLY110 PRO111 LEU112 LEU113 TRP114 GLU115 THR116 GLN117 LEU118 GLY119 LEU120 ALA121 PHE122 LEU123 ARG124 GLY125 LEU126 SER127 TYR128 HIS129 ASP130 GLY131 ALA132 LEU133 VAL134 VAL135 THR136 LYS137 ALA138 GLY139 TYR140 TYR141 TYR142 ILE143 TYR144 SER145 LYS146 VAL147 GLN148 LEU149 GLY150 GLY151 VAL152 GLY153 CYS154 ALA159 SER160 THR161 ILE162 THR163 HIS164 GLY165 LEU166 TYR167 LYS168 ARG169 THR170 PRO171 ARG172 TYR173 PRO174 GLU175 GLU176 LEU177 GLU178 LEU179 LEU180 VAL181 SER182 GLN183 GLN184 SER185 PRO186 CYS187 GLY188 ARG195 VAL196 TRP197 TRP198 ASP199 SER200 SER201 PHE202 LEU203 GLY204 GLY205 VAL206 VAL207 HIS208 LEU209 GLU210 ALA211 GLY212 GLU213 GLU214 VAL215 VAL216 VAL217 ARG218 VAL219 LEU220 ASP221 GLU222 ARG223 LEU224 VAL225 ARG226 LEU227 ARG228 ASP229 GLY230 THR231 ARG232 SER233 TYR234 PHE235 GLY236 ALA237 PHE238 MET239 VAL240 |
Unit 2 | VAL92 ASN93 PRO94 ALA95 ALA96 HIS97 LEU98 THR99 GLY100 ALA101 ASN102 SER103 SER104 LEU105 THR106 GLY107 SER108 GLY109 GLY110 PRO111 LEU112 LEU113 TRP114 GLU115 THR116 GLN117 LEU118 GLY119 LEU120 ALA121 PHE122 LEU123 ARG124 GLY125 LEU126 SER127 TYR128 HIS129 ASP130 GLY131 ALA132 LEU133 VAL134 VAL135 THR136 LYS137 ALA138 GLY139 TYR140 TYR141 TYR142 ILE143 TYR144 SER145 LYS146 VAL147 GLN148 LEU149 GLY150 GLY151 VAL152 GLY153 CYS154 ALA159 SER160 THR161 ILE162 THR163 HIS164 GLY165 LEU166 TYR167 LYS168 ARG169 THR170 PRO171 ARG172 TYR173 PRO174 GLU175 GLU176 LEU177 GLU178 LEU179 LEU180 VAL181 SER182 GLN183 GLN184 SER185 PRO186 CYS187 GLY188 ARG195 VAL196 TRP197 TRP198 ASP199 SER200 SER201 PHE202 LEU203 GLY204 GLY205 VAL206 VAL207 HIS208 LEU209 GLU210 ALA211 GLY212 GLU213 GLU214 VAL215 VAL216 VAL217 ARG218 VAL219 LEU220 ASP221 GLU222 ARG223 LEU224 VAL225 ARG226 LEU227 ARG228 ASP229 GLY230 THR231 ARG232 SER233 TYR234 PHE235 GLY236 ALA237 PHE238 MET239 VAL240 |
Unit 3 | THR33 PRO34 THR35 TYR36 PRO37 TRP38 ARG39 ASP40 ALA41 GLU42 THR43 GLY44 GLU45 ARG46 LEU47 VAL48 CYS49 ALA50 GLN51 CYS52 PRO53 PRO54 GLY55 THR56 PHE57 VAL58 GLN59 ARG60 PRO61 CYS62 ARG63 ARG64 ASP65 SER66 PRO67 THR68 THR69 CYS70 GLY71 PRO72 CYS73 PRO74 PRO75 ARG76 HIS77 TYR78 THR79 GLN80 PHE81 TRP82 ASN83 TYR84 LEU85 GLU86 ARG87 CYS88 ARG89 TYR90 CYS91 ASN92 VAL93 LEU94 CYS95 GLY96 GLU97 ARG98 GLU99 GLU100 GLU101 ALA102 ARG103 ALA104 CYS105 HIS106 ALA107 THR108 HIS109 ASN110 ARG111 ALA112 CYS113 ARG114 CYS115 ARG116 THR117 GLY118 PHE119 PHE120 ALA121 HIS122 ALA123 GLY124 PHE125 CYS126 LEU127 GLU128 HIS129 ALA130 SER131 CYS132 PRO133 PRO134 GLY135 ALA136 GLY137 VAL138 ILE139 ALA140 PRO141 GLY142 THR143 PRO144 SER145 GLN146 ASN147 THR148 GLN149 CYS150 GLN151 PRO152 CYS153 PRO154 PRO155 GLY156 THR157 PHE158 SER159 ALA160 SER161 SER162 SER163 SER164 SER165 GLU166 GLN167 CYS168 GLN169 PRO170 HIS171 ARG172 ASN173 CYS174 THR175 ALA176 LEU177 GLY178 LEU179 ALA180 LEU181 ASN182 VAL183 PRO184 GLY185 SER186 SER187 SER188 HIS189 ASP190 THR191 LEU192 CYS193 THR194 SER195 |
Unit 4 | THR33 PRO34 THR35 TYR36 PRO37 TRP38 ARG39 ASP40 ALA41 GLU42 THR43 GLY44 GLU45 ARG46 LEU47 VAL48 CYS49 ALA50 GLN51 CYS52 PRO53 PRO54 GLY55 THR56 PHE57 VAL58 GLN59 ARG60 PRO61 CYS62 ARG63 ARG64 ASP65 SER66 PRO67 THR68 THR69 CYS70 GLY71 PRO72 CYS73 PRO74 PRO75 ARG76 HIS77 TYR78 THR79 GLN80 PHE81 TRP82 ASN83 TYR84 LEU85 GLU86 ARG87 CYS88 ARG89 TYR90 CYS91 ASN92 VAL93 LEU94 CYS95 GLY96 GLU97 ARG98 GLU99 GLU100 GLU101 ALA102 ARG103 ALA104 CYS105 HIS106 ALA107 THR108 HIS109 ASN110 ARG111 ALA112 CYS113 ARG114 CYS115 ARG116 THR117 GLY118 PHE119 PHE120 ALA121 HIS122 ALA123 GLY124 PHE125 CYS126 LEU127 GLU128 HIS129 ALA130 SER131 CYS132 PRO133 PRO134 GLY135 ALA136 GLY137 VAL138 ILE139 ALA140 PRO141 GLY142 THR143 PRO144 SER145 GLN146 ASN147 THR148 GLN149 CYS150 GLN151 PRO152 CYS153 PRO154 PRO155 GLY156 THR157 PHE158 SER159 ALA160 SER161 SER162 SER163 SER164 SER165 GLU166 GLN167 CYS168 GLN169 PRO170 HIS171 ARG172 ASN173 CYS174 THR175 ALA176 LEU177 GLY178 LEU179 ALA180 LEU181 ASN182 VAL183 PRO184 GLY185 SER186 SER187 SER188 HIS189 ASP190 THR191 LEU192 CYS193 THR194 |
Unit 5 | NAG1 NAG2 BMA3 MAN4 |
Unit 6 | CL301 |
Unit 7 | CL301 |
Unit 8 | MG305 |
Unit 9 | NAG301 MG302 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |