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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF NADP-BOUND WBJB FROM A. BAUMANNII COMMU STRAIN D1279779
Keywords ROSSMANN FOLD, DEHYDRATASE, NADP, NUCLEOSIDE-DIPHOSPHATE SUG EPIMERASE, ISOMERASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4J2O     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 315 2368 112
2  Protein    B 313 2364 104
3  Protein    C 316 2379 112
4  Protein    D 312 2345 112
5  Protein    E 303 2285 104
6  Protein    F 300 2260 104
7  Ligand    A 1 0 48
8  Ligand    B 1 0 48
9  Ligand    C 1 0 48
10  Ligand    D 1 0 48
11  Ligand    E 1 0 48
12  Ligand    F 1 0 48
13 Water     160 0 160
total       2025 14001 1096

Proteins
Unit 1 MSE1 PHE2 LYS3 ASP4 LYS5 VAL6 LEU7 LEU8 ILE9 THR10 GLY11 GLY12 THR13 GLY14 SER15 PHE16 GLY17 ASN18 ALA19 VAL20 LEU21 LYS22 ARG23 PHE24 LEU25 GLU26 THR27 ASP28 ILE29 LYS30 GLU31 ILE32 ARG33 ILE34 PHE35 SER36 ARG37 ASP38 GLU39 LYS40 LYS41 GLN42 ASP43 ASP44 MSE45 ARG46 LYS47 LYS48 TYR49 HIS50 SER51 ALA52 LYS53 LEU54 LYS55 PHE56 TYR57 ILE58 GLY59 ASP60 VAL61 ARG62 ASP63 TYR64 ASN65 SER66 ILE67 LEU68 ASN69 ALA70 THR71 ARG72 GLY73 VAL74 ASP75 TYR76 ILE77 TYR78 HIS79 ALA80 ALA81 ALA82 LEU83 LYS84 GLN85 VAL86 PRO87 SER88 CYS89 GLU90 PHE91 HIS92 PRO93 MSE94 GLU95 ALA96 VAL97 LYS98 THR99 ASN100 VAL101 LEU102 GLY103 THR104 GLU105 ASN106 VAL107 LEU108 GLU109 ALA110 ALA111 ILE112 GLN113 ASN114 HIS115 VAL116 LYS117 ARG118 VAL119 VAL120 CYS121 LEU122 SER123 THR124 ASP125 LYS126 ALA127 VAL128 TYR129 PRO130 ILE131 ASN132 ALA133 MSE134 GLY135 ILE136 SER137 LYS138 ALA139 MSE140 MSE141 GLU142 LYS143 VAL144 MSE145 VAL146 ALA147 LYS148 SER149 ARG150 ASN151 LEU152 GLU153 GLY154 LEU155 ASP156 THR157 VAL158 ILE159 CYS160 GLY161 THR162 ARG163 TYR164 GLY165 ASN166 VAL167 MSE168 ALA169 SER170 ARG171 GLY172 SER173 VAL174 ILE175 PRO176 LEU177 PHE178 VAL179 ASP180 GLN181 ILE182 ARG183 GLN184 GLY185 LYS186 PRO187 LEU188 THR189 ILE190 THR191 ASP192 PRO193 ASN194 MSE195 THR196 ARG197 PHE198 MSE199 MSE200 THR201 LEU202 GLU203 ASP204 ALA205 VAL206 ASP207 LEU208 VAL209 LEU210 TYR211 ALA212 PHE213 GLU214 HIS215 GLY216 GLU217 ASN218 GLY219 ASP220 ILE221 PHE222 VAL223 GLN224 LYS225 ALA226 PRO227 ALA228 ALA229 THR230 ILE231 ALA232 VAL233 LEU234 ALA235 GLU236 ALA237 LEU238 LYS239 GLN240 LEU241 LEU242 ASN243 VAL244 GLU245 ASP246 HIS247 PRO248 ILE249 SER250 ILE251 MSE252 GLY253 THR254 ARG255 HIS256 GLY257 GLU258 LYS259 ALA260 PHE261 GLU262 ALA263 LEU264 LEU265 SER266 ARG267 GLU268 GLU269 MSE270 VAL271 HIS272 ALA273 PHE274 ASP275 GLN276 GLY277 ASP278 TYR279 PHE280 ARG281 VAL282 PRO283 ALA284 ASP285 GLN286 ASP307 TYR308 ASN309 SER310 HIS311 ASN312 THR313 THR314 ARG315 LEU316 ASP317 VAL318 GLU319 GLY320 MSE321 LYS322 GLN323 LEU324 LEU325 LEU326 LYS327 LEU328 ASP329 PHE330 VAL331 ARG332 ALA333 LEU334 THR335
Unit 2 MSE1 PHE2 LYS3 ASP4 LYS5 VAL6 LEU7 LEU8 ILE9 THR10 GLY11 GLY12 THR13 GLY14 SER15 PHE16 GLY17 ASN18 ALA19 VAL20 LEU21 LYS22 ARG23 PHE24 LEU25 GLU26 THR27 ASP28 ILE29 LYS30 GLU31 ILE32 ARG33 ILE34 PHE35 SER36 ARG37 ASP38 GLU39 LYS40 LYS41 GLN42 ASP43 ASP44 MSE45 ARG46 LYS47 LYS48 TYR49 HIS50 SER51 ALA52 LYS53 LEU54 LYS55 PHE56 TYR57 ILE58 GLY59 ASP60 VAL61 ARG62 ASP63 TYR64 ASN65 SER66 ILE67 LEU68 ASN69 ALA70 THR71 ARG72 GLY73 VAL74 ASP75 TYR76 ILE77 TYR78 HIS79 ALA80 ALA81 ALA82 LEU83 LYS84 GLN85 VAL86 PRO87 SER88 CYS89 GLU90 PHE91 HIS92 PRO93 MSE94 GLU95 ALA96 VAL97 LYS98 THR99 ASN100 VAL101 LEU102 GLY103 THR104 GLU105 ASN106 VAL107 LEU108 GLU109 ALA110 ALA111 ILE112 GLN113 ASN114 HIS115 VAL116 LYS117 ARG118 VAL119 VAL120 CYS121 LEU122 SER123 THR124 ASP125 LYS126 ALA127 VAL128 TYR129 PRO130 ILE131 ASN132 ALA133 MSE134 GLY135 ILE136 SER137 LYS138 ALA139 MSE140 MSE141 GLU142 LYS143 VAL144 MSE145 VAL146 ALA147 LYS148 SER149 ARG150 ASN151 LEU152 GLU153 GLY154 LEU155 ASP156 THR157 VAL158 ILE159 CYS160 GLY161 THR162 ARG163 TYR164 GLY165 ASN166 VAL167 MSE168 ALA169 SER170 ARG171 GLY172 SER173 VAL174 ILE175 PRO176 LEU177 PHE178 VAL179 ASP180 GLN181 ILE182 ARG183 GLN184 GLY185 LYS186 PRO187 LEU188 THR189 ILE190 THR191 ASP192 PRO193 ASN194 MSE195 THR196 ARG197 PHE198 MSE199 MSE200 THR201 LEU202 GLU203 ASP204 ALA205 VAL206 ASP207 LEU208 VAL209 LEU210 TYR211 ALA212 PHE213 GLU214 HIS215 GLY216 GLU217 ASN218 GLY219 ASP220 ILE221 PHE222 VAL223 GLN224 LYS225 ALA226 PRO227 ALA228 ALA229 THR230 ILE231 ALA232 VAL233 LEU234 ALA235 GLU236 ALA237 LEU238 LYS239 GLN240 LEU241 LEU242 ASN243 VAL244 GLU245 ASP246 HIS247 PRO248 ILE249 SER250 ILE251 ALA260 PHE261 GLU262 ALA263 LEU264 LEU265 SER266 ARG267 GLU268 GLU269 MSE270 VAL271 HIS272 ALA273 PHE274 ASP275 GLN276 GLY277 ASP278 TYR279 PHE280 ARG281 VAL282 PRO283 ALA284 ASP285 GLU306 ASP307 TYR308 ASN309 SER310 HIS311 ASN312 THR313 THR314 ARG315 LEU316 ASP317 VAL318 GLU319 GLY320 MSE321 LYS322 GLN323 LEU324 LEU325 LEU326 LYS327 LEU328 ASP329 PHE330 VAL331 ARG332 ALA333 LEU334 THR335 ARG336 GLY337 GLU338 TYR339 ILE340 SER341
Unit 3 MSE1 PHE2 LYS3 ASP4 LYS5 VAL6 LEU7 LEU8 ILE9 THR10 GLY11 GLY12 THR13 GLY14 SER15 PHE16 GLY17 ASN18 ALA19 VAL20 LEU21 LYS22 ARG23 PHE24 LEU25 GLU26 THR27 ASP28 ILE29 LYS30 GLU31 ILE32 ARG33 ILE34 PHE35 SER36 ARG37 ASP38 GLU39 LYS40 LYS41 GLN42 ASP43 ASP44 MSE45 ARG46 LYS47 LYS48 TYR49 HIS50 SER51 ALA52 LYS53 LEU54 LYS55 PHE56 TYR57 ILE58 GLY59 ASP60 VAL61 ARG62 ASP63 TYR64 ASN65 SER66 ILE67 LEU68 ASN69 ALA70 THR71 ARG72 GLY73 VAL74 ASP75 TYR76 ILE77 TYR78 HIS79 ALA80 ALA81 ALA82 LEU83 LYS84 GLN85 VAL86 PRO87 SER88 CYS89 GLU90 PHE91 HIS92 PRO93 MSE94 GLU95 ALA96 VAL97 LYS98 THR99 ASN100 VAL101 LEU102 GLY103 THR104 GLU105 ASN106 VAL107 LEU108 GLU109 ALA110 ALA111 ILE112 GLN113 ASN114 HIS115 VAL116 LYS117 ARG118 VAL119 VAL120 CYS121 LEU122 SER123 THR124 ASP125 LYS126 ALA127 VAL128 TYR129 PRO130 ILE131 ASN132 ALA133 MSE134 GLY135 ILE136 SER137 LYS138 ALA139 MSE140 MSE141 GLU142 LYS143 VAL144 MSE145 VAL146 ALA147 LYS148 SER149 ARG150 ASN151 LEU152 GLU153 GLY154 LEU155 ASP156 THR157 VAL158 ILE159 CYS160 GLY161 THR162 ARG163 TYR164 GLY165 ASN166 VAL167 MSE168 ALA169 SER170 ARG171 GLY172 SER173 VAL174 ILE175 PRO176 LEU177 PHE178 VAL179 ASP180 GLN181 ILE182 ARG183 GLN184 GLY185 LYS186 PRO187 LEU188 THR189 ILE190 THR191 ASP192 PRO193 ASN194 MSE195 THR196 ARG197 PHE198 MSE199 MSE200 THR201 LEU202 GLU203 ASP204 ALA205 VAL206 ASP207 LEU208 VAL209 LEU210 TYR211 ALA212 PHE213 GLU214 HIS215 GLY216 GLU217 ASN218 GLY219 ASP220 ILE221 PHE222 VAL223 GLN224 LYS225 ALA226 PRO227 ALA228 ALA229 THR230 ILE231 ALA232 VAL233 LEU234 ALA235 GLU236 ALA237 LEU238 LYS239 GLN240 LEU241 LEU242 ASN243 VAL244 GLU245 ASP246 HIS247 PRO248 ILE249 SER250 ILE251 MSE252 GLY253 THR254 ARG255 HIS256 GLY257 GLU258 LYS259 ALA260 PHE261 GLU262 ALA263 LEU264 LEU265 SER266 ARG267 GLU268 GLU269 MSE270 VAL271 HIS272 ALA273 PHE274 ASP275 GLN276 GLY277 ASP278 TYR279 PHE280 ARG281 VAL282 PRO283 ALA284 ASP285 GLU306 ASP307 TYR308 ASN309 SER310 HIS311 ASN312 THR313 THR314 ARG315 LEU316 ASP317 VAL318 GLU319 GLY320 MSE321 LYS322 GLN323 LEU324 LEU325 LEU326 LYS327 LEU328 ASP329 PHE330 VAL331 ARG332 ALA333 LEU334 THR335 ARG336
Unit 4 MSE1 PHE2 LYS3 ASP4 LYS5 VAL6 LEU7 LEU8 ILE9 THR10 GLY11 GLY12 THR13 GLY14 SER15 PHE16 GLY17 ASN18 ALA19 VAL20 LEU21 LYS22 ARG23 PHE24 LEU25 GLU26 THR27 ASP28 ILE29 LYS30 GLU31 ILE32 ARG33 ILE34 PHE35 SER36 ARG37 ASP38 GLU39 LYS40 LYS41 GLN42 ASP43 ASP44 MSE45 ARG46 LYS47 LYS48 TYR49 HIS50 SER51 ALA52 LYS53 LEU54 LYS55 PHE56 TYR57 ILE58 GLY59 ASP60 VAL61 ARG62 ASP63 TYR64 ASN65 SER66 ILE67 LEU68 ASN69 ALA70 THR71 ARG72 GLY73 VAL74 ASP75 TYR76 ILE77 TYR78 HIS79 ALA80 ALA81 ALA82 LEU83 LYS84 GLN85 VAL86 PRO87 SER88 CYS89 GLU90 PHE91 HIS92 PRO93 MSE94 GLU95 ALA96 VAL97 LYS98 THR99 ASN100 VAL101 LEU102 GLY103 THR104 GLU105 ASN106 VAL107 LEU108 GLU109 ALA110 ALA111 ILE112 GLN113 ASN114 HIS115 VAL116 LYS117 ARG118 VAL119 VAL120 CYS121 LEU122 SER123 THR124 ASP125 LYS126 ALA127 VAL128 TYR129 PRO130 ILE131 ASN132 ALA133 MSE134 GLY135 ILE136 SER137 LYS138 ALA139 MSE140 MSE141 GLU142 LYS143 VAL144 MSE145 VAL146 ALA147 LYS148 SER149 ARG150 ASN151 LEU152 GLU153 GLY154 LEU155 ASP156 THR157 VAL158 ILE159 CYS160 GLY161 THR162 ARG163 TYR164 GLY165 ASN166 VAL167 MSE168 ALA169 SER170 ARG171 GLY172 SER173 VAL174 ILE175 PRO176 LEU177 PHE178 VAL179 ASP180 GLN181 ILE182 ARG183 GLN184 GLY185 LYS186 PRO187 LEU188 THR189 ILE190 THR191 ASP192 PRO193 ASN194 MSE195 THR196 ARG197 PHE198 MSE199 MSE200 THR201 LEU202 GLU203 ASP204 ALA205 VAL206 ASP207 LEU208 VAL209 LEU210 TYR211 ALA212 PHE213 GLU214 HIS215 GLY216 GLU217 ASN218 GLY219 ASP220 ILE221 PHE222 VAL223 GLN224 LYS225 ALA226 PRO227 ALA228 ALA229 THR230 ILE231 ALA232 VAL233 LEU234 ALA235 GLU236 ALA237 LEU238 LYS239 GLN240 LEU241 LEU242 ASN243 VAL244 GLU245 ILE249 SER250 ILE251 MSE252 GLY253 THR254 ARG255 HIS256 GLY257 GLU258 LYS259 ALA260 PHE261 GLU262 ALA263 LEU264 LEU265 SER266 ARG267 GLU268 GLU269 MSE270 VAL271 HIS272 ALA273 PHE274 ASP275 GLN276 GLY277 ASP278 TYR279 PHE280 ARG281 VAL282 PRO283 ALA284 ASP285 ASP307 TYR308 ASN309 SER310 HIS311 ASN312 THR313 THR314 ARG315 LEU316 ASP317 VAL318 GLU319 GLY320 MSE321 LYS322 GLN323 LEU324 LEU325 LEU326 LYS327 LEU328 ASP329 PHE330 VAL331 ARG332 ALA333 LEU334 THR335 ARG336
Unit 5 MSE1 PHE2 LYS3 ASP4 LYS5 VAL6 LEU7 LEU8 ILE9 THR10 GLY11 GLY12 THR13 GLY14 SER15 PHE16 GLY17 ASN18 ALA19 VAL20 LEU21 LYS22 ARG23 PHE24 LEU25 GLU26 THR27 ASP28 ILE29 LYS30 GLU31 ILE32 ARG33 ILE34 PHE35 SER36 ARG37 ASP38 GLU39 LYS40 LYS41 GLN42 ASP43 ASP44 MSE45 ARG46 LYS47 LYS48 TYR49 HIS50 SER51 ALA52 LYS53 LEU54 LYS55 PHE56 TYR57 ILE58 GLY59 ASP60 VAL61 ARG62 ASP63 TYR64 ASN65 SER66 ILE67 LEU68 ASN69 ALA70 THR71 ARG72 GLY73 VAL74 ASP75 TYR76 ILE77 TYR78 HIS79 ALA80 ALA81 ALA82 LEU83 LYS84 GLN85 VAL86 PRO87 SER88 CYS89 GLU90 PHE91 HIS92 PRO93 MSE94 GLU95 ALA96 VAL97 LYS98 THR99 ASN100 VAL101 LEU102 GLY103 THR104 GLU105 ASN106 VAL107 LEU108 GLU109 ALA110 ALA111 ILE112 GLN113 ASN114 HIS115 VAL116 LYS117 ARG118 VAL119 VAL120 CYS121 LEU122 SER123 THR124 ASP125 LYS126 ALA127 VAL128 TYR129 PRO130 ILE131 ASN132 ALA133 MSE134 GLY135 ILE136 SER137 LYS138 ALA139 MSE140 MSE141 GLU142 LYS143 VAL144 MSE145 VAL146 ALA147 LYS148 SER149 ARG150 ASN151 LEU152 GLU153 GLY154 LEU155 ASP156 THR157 VAL158 ILE159 CYS160 GLY161 THR162 ARG163 TYR164 GLY165 ASN166 VAL167 MSE168 ALA169 SER170 ARG171 GLY172 SER173 VAL174 ILE175 PRO176 LEU177 PHE178 VAL179 ASP180 GLN181 ILE182 ARG183 GLN184 GLY185 LYS186 PRO187 LEU188 THR189 ILE190 THR191 ASP192 PRO193 ASN194 MSE195 THR196 ARG197 PHE198 MSE199 MSE200 THR201 LEU202 GLU203 ASP204 ALA205 VAL206 ASP207 LEU208 VAL209 LEU210 TYR211 ALA212 PHE213 GLU214 HIS215 GLY216 GLU217 ASN218 GLY219 ASP220 ILE221 PHE222 VAL223 GLN224 LYS225 ALA226 PRO227 ALA228 ALA229 THR230 ILE231 ALA232 VAL233 LEU234 ALA235 GLU236 ALA237 LEU238 LYS239 GLN240 LEU241 LEU242 ASN243 VAL244 GLU245 ASP246 HIS247 PRO248 ILE249 LYS259 ALA260 PHE261 GLU262 ALA263 LEU264 LEU265 SER266 ARG267 GLU268 GLU269 MSE270 VAL271 HIS272 ALA273 PHE274 ASP275 GLN276 GLY277 ASP278 TYR279 PHE280 ARG281 VAL282 PRO283 ALA284 ASP285 ASP307 TYR308 ASN309 SER310 HIS311 ASN312 THR313 THR314 ARG315 LEU316 ASP317 VAL318 GLU319 GLY320 MSE321 LYS322 GLN323 LEU324 LEU325 LEU326 LYS327 LEU328 ASP329 PHE330 VAL331 ARG332 ALA333
Unit 6 MSE1 PHE2 LYS3 ASP4 LYS5 VAL6 LEU7 LEU8 ILE9 THR10 GLY11 GLY12 THR13 GLY14 SER15 PHE16 GLY17 ASN18 ALA19 VAL20 LEU21 LYS22 ARG23 PHE24 LEU25 GLU26 THR27 ASP28 ILE29 LYS30 GLU31 ILE32 ARG33 ILE34 PHE35 SER36 ARG37 ASP38 GLU39 LYS40 LYS41 GLN42 ASP43 ASP44 MSE45 ARG46 LYS47 LYS48 TYR49 HIS50 SER51 ALA52 LYS53 LEU54 LYS55 PHE56 TYR57 ILE58 GLY59 ASP60 VAL61 ARG62 ASP63 TYR64 ASN65 SER66 ILE67 LEU68 ASN69 ALA70 THR71 ARG72 GLY73 VAL74 ASP75 TYR76 ILE77 TYR78 HIS79 ALA80 ALA81 ALA82 LEU83 LYS84 GLN85 VAL86 PRO87 SER88 CYS89 GLU90 PHE91 HIS92 PRO93 MSE94 GLU95 ALA96 VAL97 LYS98 THR99 ASN100 VAL101 LEU102 GLY103 THR104 GLU105 ASN106 VAL107 LEU108 GLU109 ALA110 ALA111 ILE112 GLN113 ASN114 HIS115 VAL116 LYS117 ARG118 VAL119 VAL120 CYS121 LEU122 SER123 THR124 ASP125 LYS126 ALA127 VAL128 TYR129 PRO130 ILE131 ASN132 ALA133 MSE134 GLY135 ILE136 SER137 LYS138 ALA139 MSE140 MSE141 GLU142 LYS143 VAL144 MSE145 VAL146 ALA147 LYS148 SER149 ARG150 ASN151 LEU152 GLU153 GLY154 LEU155 ASP156 THR157 VAL158 ILE159 CYS160 GLY161 THR162 ARG163 TYR164 GLY165 ASN166 VAL167 MSE168 ALA169 SER170 ARG171 GLY172 SER173 VAL174 ILE175 PRO176 LEU177 PHE178 VAL179 ASP180 GLN181 ILE182 ARG183 GLN184 GLY185 LYS186 PRO187 LEU188 THR189 ILE190 THR191 ASP192 PRO193 ASN194 MSE195 THR196 ARG197 PHE198 MSE199 MSE200 THR201 LEU202 GLU203 ASP204 ALA205 VAL206 ASP207 LEU208 VAL209 LEU210 TYR211 ALA212 PHE213 GLU214 HIS215 GLY216 GLU217 ASN218 GLY219 ASP220 ILE221 PHE222 VAL223 GLN224 LYS225 ALA226 PRO227 ALA228 ALA229 THR230 ILE231 ALA232 VAL233 LEU234 ALA235 GLU236 ALA237 LEU238 LYS239 GLN240 LEU241 LEU242 ASN243 VAL244 GLU245 LYS259 ALA260 PHE261 GLU262 ALA263 LEU264 LEU265 SER266 ARG267 GLU268 GLU269 MSE270 VAL271 HIS272 ALA273 PHE274 ASP275 GLN276 GLY277 ASP278 TYR279 PHE280 ARG281 VAL282 PRO283 ALA284 ASP285 ASP307 TYR308 ASN309 SER310 HIS311 ASN312 THR313 THR314 ARG315 LEU316 ASP317 VAL318 GLU319 GLY320 MSE321 LYS322 GLN323 LEU324 LEU325 LEU326 LYS327 LEU328 ASP329 PHE330 VAL331 ARG332 ALA333 LEU334

Ligands
Unit 7 NAP400
Unit 8 NAP400
Unit 9 NAP400
Unit 10 NAP400
Unit 11 NAP400
Unit 12 NAP400

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany