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Sequence, Chains, Asymmetric and Biological Units

Title LEANYER ORTHOBUNYAVIRUS NUCLEOPROTEIN-SSRNA COMPLEX
Keywords PROTEIN-RNA COMPLEX, RNA BINDING PROTEIN, RNA BINDING, NUCLE PROTEIN, VIRAL PROTEIN-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4J1G     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NUCLEOCAPSID  A 228 1807 0
2  Protein   NUCLEOCAPSID  D 227 1799 0
3  Protein   NUCLEOCAPSID  C 228 1807 0
4  Protein   NUCLEOCAPSID  B 227 1799 0
5  DNA/RNA    E 45 881 0
6 Water     62 0 62
total       1017 8093 62

Proteins
Unit 1 ASP6 PHE7 ILE8 TYR9 ASP10 ASP11 ARG12 PRO13 ALA14 ALA15 VAL16 SER17 SER18 THR19 PHE20 ASN21 PRO22 GLU23 LYS24 GLY25 TYR26 MET27 ASP28 PHE29 ILE30 THR31 ALA32 TYR33 GLY34 LYS35 ASN36 ILE37 ASN38 ALA39 ASP40 ASN41 VAL42 ARG43 ILE44 PHE45 PHE46 LEU47 ASN48 HIS49 LYS50 LYS51 ALA52 LYS53 ASP54 SER55 LEU56 LYS57 GLY58 SER59 PRO60 LYS61 VAL62 GLU63 VAL64 ASP65 LEU66 GLN67 PHE68 GLY69 THR70 LEU71 ARG72 VAL73 LYS74 VAL75 VAL76 ASN77 ASN78 HIS79 ASN80 PRO81 ARG82 ASN83 ARG84 ASP85 ASN86 PRO87 VAL88 ALA89 ASP90 ASN91 ALA92 ILE93 THR94 LEU95 HIS96 ARG97 LEU98 SER99 GLY100 TYR101 LEU102 ALA103 LYS104 TRP105 CYS106 PHE107 ASP108 GLU109 ILE110 ASP111 HIS112 GLY113 GLN114 ILE115 GLU116 GLU117 ALA118 GLU119 VAL120 LYS121 SER122 LYS123 VAL124 VAL125 ILE126 PRO127 LEU128 ALA129 GLU130 ALA131 LYS132 GLY133 CYS134 LYS135 TRP136 GLY137 ASP138 GLY139 VAL140 ALA141 LEU142 TYR143 LEU144 ALA145 PHE146 ALA147 PRO148 GLY149 ALA150 GLU151 MET152 PHE153 LEU154 LYS155 ASP156 PHE157 GLU158 PHE159 TYR160 PRO161 LEU162 ALA163 ILE164 ASP165 ILE166 GLN167 ARG168 VAL169 VAL170 LYS171 ASP172 GLY173 MET174 ASP175 ILE176 THR177 PHE178 MET179 ARG180 LYS181 VAL182 LEU183 LYS184 GLN185 ARG186 TYR187 GLY188 THR189 LYS190 THR191 ALA192 ASP193 ASP194 TRP195 MET196 ILE197 SER198 GLU199 VAL200 THR201 ALA202 ILE203 GLN204 SER205 ALA206 VAL207 LYS208 VAL209 VAL210 ALA211 LYS212 LEU213 PRO214 TRP215 ALA216 LYS217 ALA218 GLY219 PHE220 THR221 ALA222 ALA223 ALA224 LYS225 ASN226 PHE227 LEU228 ALA229 LYS230 PHE231 ASN232 ILE233
Unit 2 ASP6 PHE7 ILE8 TYR9 ASP10 ASP11 ARG12 PRO13 ALA14 ALA15 VAL16 SER17 SER18 THR19 PHE20 ASN21 PRO22 GLU23 LYS24 GLY25 TYR26 MET27 ASP28 PHE29 ILE30 THR31 ALA32 TYR33 GLY34 LYS35 ASN36 ILE37 ASN38 ALA39 ASP40 ASN41 VAL42 ARG43 ILE44 PHE45 PHE46 LEU47 ASN48 HIS49 LYS50 LYS51 ALA52 LYS53 ASP54 SER55 LEU56 LYS57 GLY58 SER59 PRO60 LYS61 VAL62 GLU63 VAL64 ASP65 LEU66 GLN67 PHE68 GLY69 THR70 LEU71 ARG72 VAL73 LYS74 VAL75 VAL76 ASN77 ASN78 HIS79 ASN80 PRO81 ARG82 ASN83 ARG84 ASP85 ASN86 PRO87 VAL88 ALA89 ASP90 ASN91 ALA92 ILE93 THR94 LEU95 HIS96 ARG97 LEU98 SER99 GLY100 TYR101 LEU102 ALA103 LYS104 TRP105 CYS106 PHE107 ASP108 GLU109 ILE110 ASP111 HIS112 GLY113 GLN114 ILE115 GLU116 GLU117 ALA118 GLU119 VAL120 LYS121 SER122 LYS123 VAL124 VAL125 ILE126 PRO127 LEU128 ALA129 GLU130 ALA131 LYS132 GLY133 CYS134 LYS135 TRP136 GLY137 ASP138 GLY139 VAL140 ALA141 LEU142 TYR143 LEU144 ALA145 PHE146 ALA147 PRO148 GLY149 ALA150 GLU151 MET152 PHE153 LEU154 LYS155 ASP156 PHE157 GLU158 PHE159 TYR160 PRO161 LEU162 ALA163 ILE164 ASP165 ILE166 GLN167 ARG168 VAL169 VAL170 LYS171 ASP172 GLY173 MET174 ASP175 ILE176 THR177 PHE178 MET179 ARG180 LYS181 VAL182 LEU183 LYS184 GLN185 ARG186 TYR187 GLY188 THR189 LYS190 THR191 ALA192 ASP193 ASP194 TRP195 MET196 ILE197 SER198 GLU199 VAL200 THR201 ALA202 ILE203 GLN204 SER205 ALA206 VAL207 LYS208 VAL209 VAL210 ALA211 LYS212 LEU213 PRO214 TRP215 ALA216 LYS217 ALA218 GLY219 PHE220 THR221 ALA222 ALA223 ALA224 LYS225 ASN226 PHE227 LEU228 ALA229 LYS230 PHE231 ASN232
Unit 3 ASP6 PHE7 ILE8 TYR9 ASP10 ASP11 ARG12 PRO13 ALA14 ALA15 VAL16 SER17 SER18 THR19 PHE20 ASN21 PRO22 GLU23 LYS24 GLY25 TYR26 MET27 ASP28 PHE29 ILE30 THR31 ALA32 TYR33 GLY34 LYS35 ASN36 ILE37 ASN38 ALA39 ASP40 ASN41 VAL42 ARG43 ILE44 PHE45 PHE46 LEU47 ASN48 HIS49 LYS50 LYS51 ALA52 LYS53 ASP54 SER55 LEU56 LYS57 GLY58 SER59 PRO60 LYS61 VAL62 GLU63 VAL64 ASP65 LEU66 GLN67 PHE68 GLY69 THR70 LEU71 ARG72 VAL73 LYS74 VAL75 VAL76 ASN77 ASN78 HIS79 ASN80 PRO81 ARG82 ASN83 ARG84 ASP85 ASN86 PRO87 VAL88 ALA89 ASP90 ASN91 ALA92 ILE93 THR94 LEU95 HIS96 ARG97 LEU98 SER99 GLY100 TYR101 LEU102 ALA103 LYS104 TRP105 CYS106 PHE107 ASP108 GLU109 ILE110 ASP111 HIS112 GLY113 GLN114 ILE115 GLU116 GLU117 ALA118 GLU119 VAL120 LYS121 SER122 LYS123 VAL124 VAL125 ILE126 PRO127 LEU128 ALA129 GLU130 ALA131 LYS132 GLY133 CYS134 LYS135 TRP136 GLY137 ASP138 GLY139 VAL140 ALA141 LEU142 TYR143 LEU144 ALA145 PHE146 ALA147 PRO148 GLY149 ALA150 GLU151 MET152 PHE153 LEU154 LYS155 ASP156 PHE157 GLU158 PHE159 TYR160 PRO161 LEU162 ALA163 ILE164 ASP165 ILE166 GLN167 ARG168 VAL169 VAL170 LYS171 ASP172 GLY173 MET174 ASP175 ILE176 THR177 PHE178 MET179 ARG180 LYS181 VAL182 LEU183 LYS184 GLN185 ARG186 TYR187 GLY188 THR189 LYS190 THR191 ALA192 ASP193 ASP194 TRP195 MET196 ILE197 SER198 GLU199 VAL200 THR201 ALA202 ILE203 GLN204 SER205 ALA206 VAL207 LYS208 VAL209 VAL210 ALA211 LYS212 LEU213 PRO214 TRP215 ALA216 LYS217 ALA218 GLY219 PHE220 THR221 ALA222 ALA223 ALA224 LYS225 ASN226 PHE227 LEU228 ALA229 LYS230 PHE231 ASN232 ILE233
Unit 4 ASP6 PHE7 ILE8 TYR9 ASP10 ASP11 ARG12 PRO13 ALA14 ALA15 VAL16 SER17 SER18 THR19 PHE20 ASN21 PRO22 GLU23 LYS24 GLY25 TYR26 MET27 ASP28 PHE29 ILE30 THR31 ALA32 TYR33 GLY34 LYS35 ASN36 ILE37 ASN38 ALA39 ASP40 ASN41 VAL42 ARG43 ILE44 PHE45 PHE46 LEU47 ASN48 HIS49 LYS50 LYS51 ALA52 LYS53 ASP54 SER55 LEU56 LYS57 GLY58 SER59 PRO60 LYS61 VAL62 GLU63 VAL64 ASP65 LEU66 GLN67 PHE68 GLY69 THR70 LEU71 ARG72 VAL73 LYS74 VAL75 VAL76 ASN77 ASN78 HIS79 ASN80 PRO81 ARG82 ASN83 ARG84 ASP85 ASN86 PRO87 VAL88 ALA89 ASP90 ASN91 ALA92 ILE93 THR94 LEU95 HIS96 ARG97 LEU98 SER99 GLY100 TYR101 LEU102 ALA103 LYS104 TRP105 CYS106 PHE107 ASP108 GLU109 ILE110 ASP111 HIS112 GLY113 GLN114 ILE115 GLU116 GLU117 ALA118 GLU119 VAL120 LYS121 SER122 LYS123 VAL124 VAL125 ILE126 PRO127 LEU128 ALA129 GLU130 ALA131 LYS132 GLY133 CYS134 LYS135 TRP136 GLY137 ASP138 GLY139 VAL140 ALA141 LEU142 TYR143 LEU144 ALA145 PHE146 ALA147 PRO148 GLY149 ALA150 GLU151 MET152 PHE153 LEU154 LYS155 ASP156 PHE157 GLU158 PHE159 TYR160 PRO161 LEU162 ALA163 ILE164 ASP165 ILE166 GLN167 ARG168 VAL169 VAL170 LYS171 ASP172 GLY173 MET174 ASP175 ILE176 THR177 PHE178 MET179 ARG180 LYS181 VAL182 LEU183 LYS184 GLN185 ARG186 TYR187 GLY188 THR189 LYS190 THR191 ALA192 ASP193 ASP194 TRP195 MET196 ILE197 SER198 GLU199 VAL200 THR201 ALA202 ILE203 GLN204 SER205 ALA206 VAL207 LYS208 VAL209 VAL210 ALA211 LYS212 LEU213 PRO214 TRP215 ALA216 LYS217 ALA218 GLY219 PHE220 THR221 ALA222 ALA223 ALA224 LYS225 ASN226 PHE227 LEU228 ALA229 LYS230 PHE231 ASN232

Nucleic acids
Unit 5 U1 U2 U3 U4 U5 U6 U7 U8 U9 U10 U11 U12 U13 U14 U15 U16 U17 U18 U19 U20 U21 U22 U23 U24 U25 U26 U27 U28 U29 U30 U31 U32 U33 U34 U35 U36 U37 U38 U39 U40 U41 U42 U43 U44 U45

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany