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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF YELLOWTAIL ASCITES VIRUS VP4 PROTEASE W WILD-TYPE ACTIVE SITE REVEALS ACYL-ENZYME COMPLEXES AND PRO COMPLEXES.
Keywords VIRAL PROTEASE, BIRNAVIRUS, SERINE-LYSINE DYAD MECHANISM, AL PROTEIN FOLD, LYSINE GENERAL BASE, ACYL-ENZYME, PRODUCT COM HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4IZJ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   YELLOWTAIL ASCITES VIRUS (YAV) VP4 PROTEASE  A 203 1507 14
2  Protein   YELLOWTAIL ASCITES VIRUS (YAV) VP4 PROTEASE  B 202 1509 7
3  Protein   YELLOWTAIL ASCITES VIRUS (YAV) VP4 PROTEASE  C 203 1513 7
4  Protein   YELLOWTAIL ASCITES VIRUS (YAV) VP4 PROTEASE  D 203 1512 7
5  Protein   YELLOWTAIL ASCITES VIRUS (YAV) VP4 PROTEASE  E 203 1506 14
6  Ligand   YELLOWTAIL ASCITES VIRUS (YAV) VP4 PROTEASE  A 2 0 5
7  Ligand   YELLOWTAIL ASCITES VIRUS (YAV) VP4 PROTEASE  B 2 0 8
8  Ligand   YELLOWTAIL ASCITES VIRUS (YAV) VP4 PROTEASE  C 1 0 4
9  Ligand   YELLOWTAIL ASCITES VIRUS (YAV) VP4 PROTEASE  D 2 0 10
10  Ligand   YELLOWTAIL ASCITES VIRUS (YAV) VP4 PROTEASE  E 1 0 4
11 Water     271 0 271
total       1293 7547 351
Proteins
Unit 1 GLY514 ARG515 PHE516 SER517 ARG518 ASN519 LEU520 LYS521 ASP522 ARG523 LEU524 GLU525 SER526 ASN527 ASN528 TYR529 GLU530 GLU531 MET532 GLU533 LEU534 PRO535 PRO536 PRO537 THR538 LYS539 GLY540 VAL541 ILE542 ILE543 PRO544 VAL545 VAL546 HIS547 THR548 VAL549 GLU550 SER551 ALA552 PRO553 GLY554 GLU555 ALA556 PHE557 GLY558 SER559 LEU560 LEU561 VAL562 ILE563 ILE564 PRO565 GLY566 ALA567 TYR568 PRO569 GLU570 LEU571 LEU572 ASP573 PRO574 ASN575 GLN576 GLN577 VAL578 LEU579 SER580 HIS581 PHE582 LYS583 ASN584 ASP585 THR586 GLY587 CYS588 VAL589 TRP590 GLY591 ILE592 GLY593 GLU594 ASP595 ILE596 PRO597 PHE598 GLU599 GLY600 ASP601 ASP602 ILE603 CYS604 TYR605 THR606 ALA607 LEU608 PRO609 LEU610 LYS611 GLU612 ILE613 LYS614 LYS615 ASP616 GLY617 ASN618 ILE619 VAL620 VAL621 GLU622 LYS623 VAL624 PHE625 ALA626 GLY627 PRO628 ALA629 MET630 GLY631 PRO632 SER633 CSO634 GLN635 LEU636 GLY637 LEU638 SER639 LEU640 LEU641 VAL642 ASN643 ASP644 ILE645 ASP646 LYS647 GLY648 VAL649 PRO650 ARG651 MET652 VAL653 PHE654 THR655 GLY656 GLU657 ILE658 ALA659 ASN660 ASP661 GLU662 GLU663 THR664 ILE665 VAL666 PRO667 ILE668 CSO669 GLY670 VAL671 ASP672 ILE673 LYS674 ALA675 ILE676 ALA677 ALA678 HIS679 GLU680 HIS681 GLY682 LEU683 PRO684 LEU685 VAL686 GLY687 CYS688 GLN689 PRO690 GLY691 VAL692 ASP693 GLU694 VAL695 VAL696 ALA697 ASN698 THR699 SER700 LEU701 ALA702 SER703 HIS704 LEU705 ILE706 GLN707 SER708 GLY709 ALA710 LEU711 PRO712 VAL713 GLN714 LYS715 ALA716
Unit 2 ARG515 PHE516 SER517 ARG518 ASN519 LEU520 LYS521 ASP522 ARG523 LEU524 GLU525 SER526 ASN527 ASN528 TYR529 GLU530 GLU531 MET532 GLU533 LEU534 PRO535 PRO536 PRO537 THR538 LYS539 GLY540 VAL541 ILE542 ILE543 PRO544 VAL545 VAL546 HIS547 THR548 VAL549 GLU550 SER551 ALA552 PRO553 GLY554 GLU555 ALA556 PHE557 GLY558 SER559 LEU560 LEU561 VAL562 ILE563 ILE564 PRO565 GLY566 ALA567 TYR568 PRO569 GLU570 LEU571 LEU572 ASP573 PRO574 ASN575 GLN576 GLN577 VAL578 LEU579 SER580 HIS581 PHE582 LYS583 ASN584 ASP585 THR586 GLY587 CYS588 VAL589 TRP590 GLY591 ILE592 GLY593 GLU594 ASP595 ILE596 PRO597 PHE598 GLU599 GLY600 ASP601 ASP602 ILE603 CYS604 TYR605 THR606 ALA607 LEU608 PRO609 LEU610 LYS611 GLU612 ILE613 LYS614 LYS615 ASP616 GLY617 ASN618 ILE619 VAL620 VAL621 GLU622 LYS623 VAL624 PHE625 ALA626 GLY627 PRO628 ALA629 MET630 GLY631 PRO632 SER633 CSO634 GLN635 LEU636 GLY637 LEU638 SER639 LEU640 LEU641 VAL642 ASN643 ASP644 ILE645 ASP646 LYS647 GLY648 VAL649 PRO650 ARG651 MET652 VAL653 PHE654 THR655 GLY656 GLU657 ILE658 ALA659 ASN660 ASP661 GLU662 GLU663 THR664 ILE665 VAL666 PRO667 ILE668 CYS669 GLY670 VAL671 ASP672 ILE673 LYS674 ALA675 ILE676 ALA677 ALA678 HIS679 GLU680 HIS681 GLY682 LEU683 PRO684 LEU685 VAL686 GLY687 CYS688 GLN689 PRO690 GLY691 VAL692 ASP693 GLU694 VAL695 VAL696 ALA697 ASN698 THR699 SER700 LEU701 ALA702 SER703 HIS704 LEU705 ILE706 GLN707 SER708 GLY709 ALA710 LEU711 PRO712 VAL713 GLN714 LYS715 ALA716
Unit 3 GLY514 ARG515 PHE516 SER517 ARG518 ASN519 LEU520 LYS521 ASP522 ARG523 LEU524 GLU525 SER526 ASN527 ASN528 TYR529 GLU530 GLU531 MET532 GLU533 LEU534 PRO535 PRO536 PRO537 THR538 LYS539 GLY540 VAL541 ILE542 ILE543 PRO544 VAL545 VAL546 HIS547 THR548 VAL549 GLU550 SER551 ALA552 PRO553 GLY554 GLU555 ALA556 PHE557 GLY558 SER559 LEU560 LEU561 VAL562 ILE563 ILE564 PRO565 GLY566 ALA567 TYR568 PRO569 GLU570 LEU571 LEU572 ASP573 PRO574 ASN575 GLN576 GLN577 VAL578 LEU579 SER580 HIS581 PHE582 LYS583 ASN584 ASP585 THR586 GLY587 CYS588 VAL589 TRP590 GLY591 ILE592 GLY593 GLU594 ASP595 ILE596 PRO597 PHE598 GLU599 GLY600 ASP601 ASP602 ILE603 CYS604 TYR605 THR606 ALA607 LEU608 PRO609 LEU610 LYS611 GLU612 ILE613 LYS614 LYS615 ASP616 GLY617 ASN618 ILE619 VAL620 VAL621 GLU622 LYS623 VAL624 PHE625 ALA626 GLY627 PRO628 ALA629 MET630 GLY631 PRO632 SER633 CSO634 GLN635 LEU636 GLY637 LEU638 SER639 LEU640 LEU641 VAL642 ASN643 ASP644 ILE645 ASP646 LYS647 GLY648 VAL649 PRO650 ARG651 MET652 VAL653 PHE654 THR655 GLY656 GLU657 ILE658 ALA659 ASN660 ASP661 GLU662 GLU663 THR664 ILE665 VAL666 PRO667 ILE668 CYS669 GLY670 VAL671 ASP672 ILE673 LYS674 ALA675 ILE676 ALA677 ALA678 HIS679 GLU680 HIS681 GLY682 LEU683 PRO684 LEU685 VAL686 GLY687 CYS688 GLN689 PRO690 GLY691 VAL692 ASP693 GLU694 VAL695 VAL696 ALA697 ASN698 THR699 SER700 LEU701 ALA702 SER703 HIS704 LEU705 ILE706 GLN707 SER708 GLY709 ALA710 LEU711 PRO712 VAL713 GLN714 LYS715 ALA716
Unit 4 GLY514 ARG515 PHE516 SER517 ARG518 ASN519 LEU520 LYS521 ASP522 ARG523 LEU524 GLU525 SER526 ASN527 ASN528 TYR529 GLU530 GLU531 MET532 GLU533 LEU534 PRO535 PRO536 PRO537 THR538 LYS539 GLY540 VAL541 ILE542 ILE543 PRO544 VAL545 VAL546 HIS547 THR548 VAL549 GLU550 SER551 ALA552 PRO553 GLY554 GLU555 ALA556 PHE557 GLY558 SER559 LEU560 LEU561 VAL562 ILE563 ILE564 PRO565 GLY566 ALA567 TYR568 PRO569 GLU570 LEU571 LEU572 ASP573 PRO574 ASN575 GLN576 GLN577 VAL578 LEU579 SER580 HIS581 PHE582 LYS583 ASN584 ASP585 THR586 GLY587 CYS588 VAL589 TRP590 GLY591 ILE592 GLY593 GLU594 ASP595 ILE596 PRO597 PHE598 GLU599 GLY600 ASP601 ASP602 ILE603 CYS604 TYR605 THR606 ALA607 LEU608 PRO609 LEU610 LYS611 GLU612 ILE613 LYS614 LYS615 ASP616 GLY617 ASN618 ILE619 VAL620 VAL621 GLU622 LYS623 VAL624 PHE625 ALA626 GLY627 PRO628 ALA629 MET630 GLY631 PRO632 SER633 CYS634 GLN635 LEU636 GLY637 LEU638 SER639 LEU640 LEU641 VAL642 ASN643 ASP644 ILE645 ASP646 LYS647 GLY648 VAL649 PRO650 ARG651 MET652 VAL653 PHE654 THR655 GLY656 GLU657 ILE658 ALA659 ASN660 ASP661 GLU662 GLU663 THR664 ILE665 VAL666 PRO667 ILE668 CSO669 GLY670 VAL671 ASP672 ILE673 LYS674 ALA675 ILE676 ALA677 ALA678 HIS679 GLU680 HIS681 GLY682 LEU683 PRO684 LEU685 VAL686 GLY687 CYS688 GLN689 PRO690 GLY691 VAL692 ASP693 GLU694 VAL695 VAL696 ALA697 ASN698 THR699 SER700 LEU701 ALA702 SER703 HIS704 LEU705 ILE706 GLN707 SER708 GLY709 ALA710 LEU711 PRO712 VAL713 GLN714 LYS715 ALA716
Unit 5 GLY514 ARG515 PHE516 SER517 ARG518 ASN519 LEU520 LYS521 ASP522 ARG523 LEU524 GLU525 SER526 ASN527 ASN528 TYR529 GLU530 GLU531 MET532 GLU533 LEU534 PRO535 PRO536 PRO537 THR538 LYS539 GLY540 VAL541 ILE542 ILE543 PRO544 VAL545 VAL546 HIS547 THR548 VAL549 GLU550 SER551 ALA552 PRO553 GLY554 GLU555 ALA556 PHE557 GLY558 SER559 LEU560 LEU561 VAL562 ILE563 ILE564 PRO565 GLY566 ALA567 TYR568 PRO569 GLU570 LEU571 LEU572 ASP573 PRO574 ASN575 GLN576 GLN577 VAL578 LEU579 SER580 HIS581 PHE582 LYS583 ASN584 ASP585 THR586 GLY587 CYS588 VAL589 TRP590 GLY591 ILE592 GLY593 GLU594 ASP595 ILE596 PRO597 PHE598 GLU599 GLY600 ASP601 ASP602 ILE603 CYS604 TYR605 THR606 ALA607 LEU608 PRO609 LEU610 LYS611 GLU612 ILE613 LYS614 LYS615 ASP616 GLY617 ASN618 ILE619 VAL620 VAL621 GLU622 LYS623 VAL624 PHE625 ALA626 GLY627 PRO628 ALA629 MET630 GLY631 PRO632 SER633 CSO634 GLN635 LEU636 GLY637 LEU638 SER639 LEU640 LEU641 VAL642 ASN643 ASP644 ILE645 ASP646 LYS647 GLY648 VAL649 PRO650 ARG651 MET652 VAL653 PHE654 THR655 GLY656 GLU657 ILE658 ALA659 ASN660 ASP661 GLU662 GLU663 THR664 ILE665 VAL666 PRO667 ILE668 CSO669 GLY670 VAL671 ASP672 ILE673 LYS674 ALA675 ILE676 ALA677 ALA678 HIS679 GLU680 HIS681 GLY682 LEU683 PRO684 LEU685 VAL686 GLY687 CYS688 GLN689 PRO690 GLY691 VAL692 ASP693 GLU694 VAL695 VAL696 ALA697 ASN698 THR699 SER700 LEU701 ALA702 SER703 HIS704 LEU705 ILE706 GLN707 SER708 GLY709 ALA710 LEU711 PRO712 VAL713 GLN714 LYS715 ALA716
Ligands
Unit 6 BME801 MG802
Unit 7 BME801 BME802
Unit 8 BME801
Unit 9 GOL801 BME802
Unit 10 BME801
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany