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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF CYSTATHIONINE GAMMA LYASE (XOMETC) FROM XANTHOMONAS ORYZAE PV. ORYZAE IN COMPLEX WITH E-SITE SERINE EXTERNAL ALDIMINE STRUCTURE WITH SERINE AND A-SITE EXTERNAL STRUCTURE WITH AMINOACRYLATE INTERMEDIATES
Keywords XOCGL, SERINE EXTERNAL SCHIFF BASE, AMINOACRYLATE EXTERNAL S BASE, PLP DEPENDENT ENZYME, LYASE, CYS-MET METABOLISM PLP D ENZYME, CYSTATHIONINE GAMMA LYASE, PLP BINDING
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4IY7     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CYSTATHIONINE GAMMA-LYASE-LIKE PROTEIN  A 381 2863 0
2  Protein   CYSTATHIONINE GAMMA-LYASE-LIKE PROTEIN  B 381 2863 0
3  Protein   CYSTATHIONINE GAMMA-LYASE-LIKE PROTEIN  C 381 2863 0
4  Protein   CYSTATHIONINE GAMMA-LYASE-LIKE PROTEIN  D 383 2880 0
5  Protein   CYSTATHIONINE GAMMA-LYASE-LIKE PROTEIN  A 5 0 45
6  Protein   CYSTATHIONINE GAMMA-LYASE-LIKE PROTEIN  B 3 0 35
7  Protein   CYSTATHIONINE GAMMA-LYASE-LIKE PROTEIN  C 2 0 29
8  Protein   CYSTATHIONINE GAMMA-LYASE-LIKE PROTEIN  D 3 0 35
9 Water     1428 0 1428
total       2967 11469 1572
Proteins
Unit 1 ALA14 LEU15 SER16 LEU17 ALA18 THR19 LEU20 ALA21 ILE22 HIS23 GLY24 GLY25 GLN26 SER27 PRO28 ASP29 PRO30 SER31 THR32 GLY33 ALA34 VAL35 MET36 PRO37 PRO38 ILE39 TYR40 ALA41 THR42 SER43 THR44 TYR45 ALA46 GLN47 SER48 SER49 PRO50 GLY51 GLU52 HIS53 GLN54 GLY55 PHE56 GLU57 TYR58 SER59 ARG60 THR61 HIS62 ASN63 PRO64 THR65 ARG66 PHE67 ALA68 TYR69 GLU70 ARG71 CYS72 VAL73 ALA74 ALA75 LEU76 GLU77 GLY78 GLY79 THR80 ARG81 ALA82 PHE83 ALA84 PHE85 ALA86 SER87 GLY88 MET89 ALA90 ALA91 THR92 SER93 THR94 VAL95 MET96 GLU97 LEU98 LEU99 ASP100 ALA101 GLY102 SER103 HIS104 VAL105 VAL106 ALA107 MET108 ASP109 ASP110 LEU111 TYR112 GLY113 GLY114 THR115 PHE116 ARG117 LEU118 PHE119 GLU120 ARG121 VAL122 ARG123 ARG124 ARG125 THR126 ALA127 GLY128 LEU129 ASP130 PHE131 SER132 PHE133 VAL134 ASP135 LEU136 THR137 ASP138 PRO139 ALA140 ALA141 PHE142 LYS143 ALA144 ALA145 ILE146 ARG147 ALA148 ASP149 THR150 LYS151 MET152 VAL153 TRP154 ILE155 GLU156 THR157 PRO158 THR159 ASN160 PRO161 MET162 LEU163 LYS164 LEU165 VAL166 ASP167 ILE168 ALA169 ALA170 ILE171 ALA172 VAL173 ILE174 ALA175 ARG176 LYS177 HIS178 GLY179 LEU180 LEU181 THR182 VAL183 VAL184 ASP185 ASN186 THR187 PHE188 ALA189 SER190 PRO191 MET192 LEU193 GLN194 ARG195 PRO196 LEU197 SER198 LEU199 GLY200 ALA201 ASP202 LEU203 VAL204 VAL205 HIS206 SER207 ALA208 THR209 LYS210 TYR211 LEU212 ASN213 GLY214 HIS215 SER216 ASP217 MET218 VAL219 GLY220 GLY221 ILE222 ALA223 VAL224 VAL225 GLY226 ASP227 ASN228 ALA229 GLU230 LEU231 ALA232 GLU233 GLN234 MET235 ALA236 PHE237 LEU238 GLN239 ASN240 SER241 ILE242 GLY243 GLY244 VAL245 GLN246 GLY247 PRO248 PHE249 ASP250 SER251 PHE252 LEU253 ALA254 LEU255 ARG256 GLY257 LEU258 LYS259 THR260 LEU261 PRO262 LEU263 ARG264 MET265 ARG266 ALA267 HIS268 CYS269 GLU270 ASN271 ALA272 LEU273 ALA274 LEU275 ALA276 GLN277 TRP278 LEU279 GLU280 THR281 HIS282 PRO283 ALA284 ILE285 GLU286 LYS287 VAL288 ILE289 TYR290 PRO291 GLY292 LEU293 ALA294 SER295 HIS296 PRO297 GLN298 HIS299 VAL300 LEU301 ALA302 LYS303 ARG304 GLN305 MET306 SER307 GLY308 PHE309 GLY310 GLY311 ILE312 VAL313 SER314 ILE315 VAL316 LEU317 LYS318 GLY319 GLY320 PHE321 ASP322 ALA323 ALA324 LYS325 ARG326 PHE327 CYS328 GLU329 LYS330 THR331 GLU332 LEU333 PHE334 THR335 LEU336 ALA337 GLU338 SER339 LEU340 GLY341 GLY342 VAL343 GLU344 SER345 LEU346 VAL347 ASN348 HIS349 PRO350 ALA351 VAL352 MET353 THR354 HIS355 ALA356 SER357 ILE358 PRO359 VAL360 ALA361 ARG362 ARG363 GLU364 GLN365 LEU366 GLY367 ILE368 SER369 ASP370 ALA371 LEU372 VAL373 ARG374 LEU375 SER376 VAL377 GLY378 ILE379 GLU380 ASP381 LEU382 GLY383 ASP384 LEU385 ARG386 GLY387 ASP388 LEU389 GLU390 ARG391 ALA392 LEU393 VAL394
Unit 2 ALA14 LEU15 SER16 LEU17 ALA18 THR19 LEU20 ALA21 ILE22 HIS23 GLY24 GLY25 GLN26 SER27 PRO28 ASP29 PRO30 SER31 THR32 GLY33 ALA34 VAL35 MET36 PRO37 PRO38 ILE39 TYR40 ALA41 THR42 SER43 THR44 TYR45 ALA46 GLN47 SER48 SER49 PRO50 GLY51 GLU52 HIS53 GLN54 GLY55 PHE56 GLU57 TYR58 SER59 ARG60 THR61 HIS62 ASN63 PRO64 THR65 ARG66 PHE67 ALA68 TYR69 GLU70 ARG71 CYS72 VAL73 ALA74 ALA75 LEU76 GLU77 GLY78 GLY79 THR80 ARG81 ALA82 PHE83 ALA84 PHE85 ALA86 SER87 GLY88 MET89 ALA90 ALA91 THR92 SER93 THR94 VAL95 MET96 GLU97 LEU98 LEU99 ASP100 ALA101 GLY102 SER103 HIS104 VAL105 VAL106 ALA107 MET108 ASP109 ASP110 LEU111 TYR112 GLY113 GLY114 THR115 PHE116 ARG117 LEU118 PHE119 GLU120 ARG121 VAL122 ARG123 ARG124 ARG125 THR126 ALA127 GLY128 LEU129 ASP130 PHE131 SER132 PHE133 VAL134 ASP135 LEU136 THR137 ASP138 PRO139 ALA140 ALA141 PHE142 LYS143 ALA144 ALA145 ILE146 ARG147 ALA148 ASP149 THR150 LYS151 MET152 VAL153 TRP154 ILE155 GLU156 THR157 PRO158 THR159 ASN160 PRO161 MET162 LEU163 LYS164 LEU165 VAL166 ASP167 ILE168 ALA169 ALA170 ILE171 ALA172 VAL173 ILE174 ALA175 ARG176 LYS177 HIS178 GLY179 LEU180 LEU181 THR182 VAL183 VAL184 ASP185 ASN186 THR187 PHE188 ALA189 SER190 PRO191 MET192 LEU193 GLN194 ARG195 PRO196 LEU197 SER198 LEU199 GLY200 ALA201 ASP202 LEU203 VAL204 VAL205 HIS206 SER207 ALA208 THR209 LYS210 TYR211 LEU212 ASN213 GLY214 HIS215 SER216 ASP217 MET218 VAL219 GLY220 GLY221 ILE222 ALA223 VAL224 VAL225 GLY226 ASP227 ASN228 ALA229 GLU230 LEU231 ALA232 GLU233 GLN234 MET235 ALA236 PHE237 LEU238 GLN239 ASN240 SER241 ILE242 GLY243 GLY244 VAL245 GLN246 GLY247 PRO248 PHE249 ASP250 SER251 PHE252 LEU253 ALA254 LEU255 ARG256 GLY257 LEU258 LYS259 THR260 LEU261 PRO262 LEU263 ARG264 MET265 ARG266 ALA267 HIS268 CYS269 GLU270 ASN271 ALA272 LEU273 ALA274 LEU275 ALA276 GLN277 TRP278 LEU279 GLU280 THR281 HIS282 PRO283 ALA284 ILE285 GLU286 LYS287 VAL288 ILE289 TYR290 PRO291 GLY292 LEU293 ALA294 SER295 HIS296 PRO297 GLN298 HIS299 VAL300 LEU301 ALA302 LYS303 ARG304 GLN305 MET306 SER307 GLY308 PHE309 GLY310 GLY311 ILE312 VAL313 SER314 ILE315 VAL316 LEU317 LYS318 GLY319 GLY320 PHE321 ASP322 ALA323 ALA324 LYS325 ARG326 PHE327 CYS328 GLU329 LYS330 THR331 GLU332 LEU333 PHE334 THR335 LEU336 ALA337 GLU338 SER339 LEU340 GLY341 GLY342 VAL343 GLU344 SER345 LEU346 VAL347 ASN348 HIS349 PRO350 ALA351 VAL352 MET353 THR354 HIS355 ALA356 SER357 ILE358 PRO359 VAL360 ALA361 ARG362 ARG363 GLU364 GLN365 LEU366 GLY367 ILE368 SER369 ASP370 ALA371 LEU372 VAL373 ARG374 LEU375 SER376 VAL377 GLY378 ILE379 GLU380 ASP381 LEU382 GLY383 ASP384 LEU385 ARG386 GLY387 ASP388 LEU389 GLU390 ARG391 ALA392 LEU393 VAL394
Unit 3 ALA14 LEU15 SER16 LEU17 ALA18 THR19 LEU20 ALA21 ILE22 HIS23 GLY24 GLY25 GLN26 SER27 PRO28 ASP29 PRO30 SER31 THR32 GLY33 ALA34 VAL35 MET36 PRO37 PRO38 ILE39 TYR40 ALA41 THR42 SER43 THR44 TYR45 ALA46 GLN47 SER48 SER49 PRO50 GLY51 GLU52 HIS53 GLN54 GLY55 PHE56 GLU57 TYR58 SER59 ARG60 THR61 HIS62 ASN63 PRO64 THR65 ARG66 PHE67 ALA68 TYR69 GLU70 ARG71 CYS72 VAL73 ALA74 ALA75 LEU76 GLU77 GLY78 GLY79 THR80 ARG81 ALA82 PHE83 ALA84 PHE85 ALA86 SER87 GLY88 MET89 ALA90 ALA91 THR92 SER93 THR94 VAL95 MET96 GLU97 LEU98 LEU99 ASP100 ALA101 GLY102 SER103 HIS104 VAL105 VAL106 ALA107 MET108 ASP109 ASP110 LEU111 TYR112 GLY113 GLY114 THR115 PHE116 ARG117 LEU118 PHE119 GLU120 ARG121 VAL122 ARG123 ARG124 ARG125 THR126 ALA127 GLY128 LEU129 ASP130 PHE131 SER132 PHE133 VAL134 ASP135 LEU136 THR137 ASP138 PRO139 ALA140 ALA141 PHE142 LYS143 ALA144 ALA145 ILE146 ARG147 ALA148 ASP149 THR150 LYS151 MET152 VAL153 TRP154 ILE155 GLU156 THR157 PRO158 THR159 ASN160 PRO161 MET162 LEU163 LYS164 LEU165 VAL166 ASP167 ILE168 ALA169 ALA170 ILE171 ALA172 VAL173 ILE174 ALA175 ARG176 LYS177 HIS178 GLY179 LEU180 LEU181 THR182 VAL183 VAL184 ASP185 ASN186 THR187 PHE188 ALA189 SER190 PRO191 MET192 LEU193 GLN194 ARG195 PRO196 LEU197 SER198 LEU199 GLY200 ALA201 ASP202 LEU203 VAL204 VAL205 HIS206 SER207 ALA208 THR209 LYS210 TYR211 LEU212 ASN213 GLY214 HIS215 SER216 ASP217 MET218 VAL219 GLY220 GLY221 ILE222 ALA223 VAL224 VAL225 GLY226 ASP227 ASN228 ALA229 GLU230 LEU231 ALA232 GLU233 GLN234 MET235 ALA236 PHE237 LEU238 GLN239 ASN240 SER241 ILE242 GLY243 GLY244 VAL245 GLN246 GLY247 PRO248 PHE249 ASP250 SER251 PHE252 LEU253 ALA254 LEU255 ARG256 GLY257 LEU258 LYS259 THR260 LEU261 PRO262 LEU263 ARG264 MET265 ARG266 ALA267 HIS268 CYS269 GLU270 ASN271 ALA272 LEU273 ALA274 LEU275 ALA276 GLN277 TRP278 LEU279 GLU280 THR281 HIS282 PRO283 ALA284 ILE285 GLU286 LYS287 VAL288 ILE289 TYR290 PRO291 GLY292 LEU293 ALA294 SER295 HIS296 PRO297 GLN298 HIS299 VAL300 LEU301 ALA302 LYS303 ARG304 GLN305 MET306 SER307 GLY308 PHE309 GLY310 GLY311 ILE312 VAL313 SER314 ILE315 VAL316 LEU317 LYS318 GLY319 GLY320 PHE321 ASP322 ALA323 ALA324 LYS325 ARG326 PHE327 CYS328 GLU329 LYS330 THR331 GLU332 LEU333 PHE334 THR335 LEU336 ALA337 GLU338 SER339 LEU340 GLY341 GLY342 VAL343 GLU344 SER345 LEU346 VAL347 ASN348 HIS349 PRO350 ALA351 VAL352 MET353 THR354 HIS355 ALA356 SER357 ILE358 PRO359 VAL360 ALA361 ARG362 ARG363 GLU364 GLN365 LEU366 GLY367 ILE368 SER369 ASP370 ALA371 LEU372 VAL373 ARG374 LEU375 SER376 VAL377 GLY378 ILE379 GLU380 ASP381 LEU382 GLY383 ASP384 LEU385 ARG386 GLY387 ASP388 LEU389 GLU390 ARG391 ALA392 LEU393 VAL394
Unit 4 ALA14 LEU15 SER16 LEU17 ALA18 THR19 LEU20 ALA21 ILE22 HIS23 GLY24 GLY25 GLN26 SER27 PRO28 ASP29 PRO30 SER31 THR32 GLY33 ALA34 VAL35 MET36 PRO37 PRO38 ILE39 TYR40 ALA41 THR42 SER43 THR44 TYR45 ALA46 GLN47 SER48 SER49 PRO50 GLY51 GLU52 HIS53 GLN54 GLY55 PHE56 GLU57 TYR58 SER59 ARG60 THR61 HIS62 ASN63 PRO64 THR65 ARG66 PHE67 ALA68 TYR69 GLU70 ARG71 CYS72 VAL73 ALA74 ALA75 LEU76 GLU77 GLY78 GLY79 THR80 ARG81 ALA82 PHE83 ALA84 PHE85 ALA86 SER87 GLY88 MET89 ALA90 ALA91 THR92 SER93 THR94 VAL95 MET96 GLU97 LEU98 LEU99 ASP100 ALA101 GLY102 SER103 HIS104 VAL105 VAL106 ALA107 MET108 ASP109 ASP110 LEU111 TYR112 GLY113 GLY114 THR115 PHE116 ARG117 LEU118 PHE119 GLU120 ARG121 VAL122 ARG123 ARG124 ARG125 THR126 ALA127 GLY128 LEU129 ASP130 PHE131 SER132 PHE133 VAL134 ASP135 LEU136 THR137 ASP138 PRO139 ALA140 ALA141 PHE142 LYS143 ALA144 ALA145 ILE146 ARG147 ALA148 ASP149 THR150 LYS151 MET152 VAL153 TRP154 ILE155 GLU156 THR157 PRO158 THR159 ASN160 PRO161 MET162 LEU163 LYS164 LEU165 VAL166 ASP167 ILE168 ALA169 ALA170 ILE171 ALA172 VAL173 ILE174 ALA175 ARG176 LYS177 HIS178 GLY179 LEU180 LEU181 THR182 VAL183 VAL184 ASP185 ASN186 THR187 PHE188 ALA189 SER190 PRO191 MET192 LEU193 GLN194 ARG195 PRO196 LEU197 SER198 LEU199 GLY200 ALA201 ASP202 LEU203 VAL204 VAL205 HIS206 SER207 ALA208 THR209 LYS210 TYR211 LEU212 ASN213 GLY214 HIS215 SER216 ASP217 MET218 VAL219 GLY220 GLY221 ILE222 ALA223 VAL224 VAL225 GLY226 ASP227 ASN228 ALA229 GLU230 LEU231 ALA232 GLU233 GLN234 MET235 ALA236 PHE237 LEU238 GLN239 ASN240 SER241 ILE242 GLY243 GLY244 VAL245 GLN246 GLY247 PRO248 PHE249 ASP250 SER251 PHE252 LEU253 ALA254 LEU255 ARG256 GLY257 LEU258 LYS259 THR260 LEU261 PRO262 LEU263 ARG264 MET265 ARG266 ALA267 HIS268 CYS269 GLU270 ASN271 ALA272 LEU273 ALA274 LEU275 ALA276 GLN277 TRP278 LEU279 GLU280 THR281 HIS282 PRO283 ALA284 ILE285 GLU286 LYS287 VAL288 ILE289 TYR290 PRO291 GLY292 LEU293 ALA294 SER295 HIS296 PRO297 GLN298 HIS299 VAL300 LEU301 ALA302 LYS303 ARG304 GLN305 MET306 SER307 GLY308 PHE309 GLY310 GLY311 ILE312 VAL313 SER314 ILE315 VAL316 LEU317 LYS318 GLY319 GLY320 PHE321 ASP322 ALA323 ALA324 LYS325 ARG326 PHE327 CYS328 GLU329 LYS330 THR331 GLU332 LEU333 PHE334 THR335 LEU336 ALA337 GLU338 SER339 LEU340 GLY341 GLY342 VAL343 GLU344 SER345 LEU346 VAL347 ASN348 HIS349 PRO350 ALA351 VAL352 MET353 THR354 HIS355 ALA356 SER357 ILE358 PRO359 VAL360 ALA361 ARG362 ARG363 GLU364 GLN365 LEU366 GLY367 ILE368 SER369 ASP370 ALA371 LEU372 VAL373 ARG374 LEU375 SER376 VAL377 GLY378 ILE379 GLU380 ASP381 LEU382 GLY383 ASP384 LEU385 ARG386 GLY387 ASP388 LEU389 GLU390 ARG391 ALA392 LEU393 VAL394 ASN395 GLN396
Unit 5 SER401 GOL402 GOL403 SO4404 0JO405
Unit 6 SER401 PYR402 KOU403
Unit 7 SER401 KOU402
Unit 8 SER401 PYR402 KOU403
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany