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Title | RNA LIGASE RTCB IN COMPLEX WITH MN(II) | |
Keywords | RNA LIGASE, LIGASE | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 4ISJ | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | TRNA-SPLICING LIGASE RTCB | A | 480 | 7548 | 0 |
2 | Protein | TRNA-SPLICING LIGASE RTCB | B | 480 | 7550 | 0 |
3 | Ligand | C | 2 | 0 | 45 | |
4 | Ligand | D | 2 | 0 | 45 | |
5 | Ligand | TRNA-SPLICING LIGASE RTCB | A | 8 | 0 | 36 |
6 | Ligand | TRNA-SPLICING LIGASE RTCB | B | 7 | 0 | 31 |
7 | Water | 416 | 0 | 416 | ||
total | 1395 | 15098 | 573 |
Unit 1 | VAL2 VAL3 PRO4 LEU5 LYS6 ARG7 ILE8 ASP9 LYS10 ILE11 ARG12 TRP13 GLU14 ILE15 PRO16 LYS17 PHE18 ASP19 LYS20 ARG21 MET22 ARG23 VAL24 PRO25 GLY26 ARG27 VAL28 TYR29 ALA30 ASP31 GLU32 VAL33 LEU34 LEU35 GLU36 LYS37 MET38 LYS39 ASN40 ASP41 ARG42 THR43 LEU44 GLU45 GLN46 ALA47 THR48 ASN49 VAL50 ALA51 MET52 LEU53 PRO54 GLY55 ILE56 TYR57 LYS58 TYR59 SER60 ILE61 VAL62 MET63 PRO64 ASP65 GLY66 HIS67 GLN68 GLY69 TYR70 GLY71 PHE72 PRO73 ILE74 GLY75 GLY76 VAL77 ALA78 ALA79 PHE80 ASP81 VAL82 LYS83 GLU84 GLY85 VAL86 ILE87 SER88 PRO89 GLY90 GLY91 ILE92 GLY93 TYR94 ASP95 ILE96 ASN97 CYS98 GLY99 VAL100 ARG101 LEU102 ILE103 ARG104 THR105 ASN106 LEU107 THR108 GLU109 LYS110 GLU111 VAL112 ARG113 PRO114 ARG115 ILE116 LYS117 GLN118 LEU119 VAL120 ASP121 THR122 LEU123 PHE124 LYS125 ASN126 VAL127 PRO128 SER129 GLY130 VAL131 GLY132 SER133 GLN134 GLY135 ARG136 ILE137 LYS138 LEU139 HIS140 TRP141 THR142 GLN143 ILE144 ASP145 ASP146 VAL147 LEU148 VAL149 ASP150 GLY151 ALA152 LYS153 TRP154 ALA155 VAL156 ASP157 ASN158 GLY159 TYR160 GLY161 TRP162 GLU163 ARG164 ASP165 LEU166 GLU167 ARG168 LEU169 GLU170 GLU171 GLY172 GLY173 ARG174 MET175 GLU176 GLY177 ALA178 ASP179 PRO180 GLU181 ALA182 VAL183 SER184 GLN185 ARG186 ALA187 LYS188 GLN189 ARG190 GLY191 ALA192 PRO193 GLN194 LEU195 GLY196 SER197 LEU198 GLY199 SER200 GLY201 ASN202 HIS203 PHE204 LEU205 GLU206 VAL207 GLN208 VAL209 VAL210 ASP211 LYS212 ILE213 PHE214 ASP215 PRO216 GLU217 VAL218 ALA219 LYS220 ALA221 TYR222 GLY223 LEU224 PHE225 GLU226 GLY227 GLN228 VAL229 VAL230 VAL231 MET232 VAL233 HIS234 THR235 GLY236 SER237 ARG238 GLY239 LEU240 GLY241 HIS242 GLN243 VAL244 ALA245 SER246 ASP247 TYR248 LEU249 ARG250 ILE251 MET252 GLU253 ARG254 ALA255 ILE256 ARG257 LYS258 TYR259 ARG260 ILE261 PRO262 TRP263 PRO264 ASP265 ARG266 GLU267 LEU268 VAL269 SER270 VAL271 PRO272 PHE273 GLN274 SER275 GLU276 GLU277 GLY278 GLN279 ARG280 TYR281 PHE282 SER283 ALA284 MET285 LYS286 ALA287 ALA288 ALA289 ASN290 PHE291 ALA292 TRP293 ALA294 ASN295 ARG296 GLN297 MET298 ILE299 THR300 HIS301 TRP302 VAL303 ARG304 GLU305 SER306 PHE307 GLN308 GLU309 VAL310 PHE311 LYS312 GLN313 ASP314 PRO315 GLU316 GLY317 ASP318 LEU319 GLY320 MET321 ASP322 ILE323 VAL324 TYR325 ASP326 VAL327 ALA328 HIS329 ASN330 ILE331 GLY332 LYS333 VAL334 GLU335 GLU336 HIS337 GLU338 VAL339 ASP340 GLY341 LYS342 ARG343 VAL344 LYS345 VAL346 ILE347 VAL348 HIS349 ARG350 LYS351 GLY352 ALA353 THR354 ARG355 ALA356 PHE357 PRO358 PRO359 GLY360 HIS361 GLU362 ALA363 VAL364 PRO365 ARG366 LEU367 TYR368 ARG369 ASP370 VAL371 GLY372 GLN373 PRO374 VAL375 LEU376 ILE377 PRO378 GLY379 SER380 MET381 GLY382 THR383 ALA384 SER385 TYR386 ILE387 LEU388 ALA389 GLY390 THR391 GLU392 GLY393 ALA394 MET395 LYS396 GLU397 THR398 PHE399 GLY400 SER401 THR402 CYS403 HIS404 GLY405 ALA406 GLY407 ARG408 VAL409 LEU410 SER411 ARG412 LYS413 ALA414 ALA415 THR416 ARG417 GLN418 TYR419 ARG420 GLY421 ASP422 ARG423 ILE424 ARG425 GLN426 GLU427 LEU428 LEU429 ASN430 ARG431 GLY432 ILE433 TYR434 VAL435 ARG436 ALA437 ALA438 SER439 MET440 ARG441 VAL442 VAL443 ALA444 GLU445 GLU446 ALA447 PRO448 GLY449 ALA450 TYR451 LYS452 ASN453 VAL454 ASP455 ASN456 VAL457 VAL458 LYS459 VAL460 VAL461 SER462 GLU463 ALA464 GLY465 ILE466 ALA467 LYS468 LEU469 VAL470 ALA471 ARG472 MET473 ARG474 PRO475 ILE476 GLY477 VAL478 ALA479 LYS480 GLY481 |
Unit 2 | VAL2 VAL3 PRO4 LEU5 LYS6 ARG7 ILE8 ASP9 LYS10 ILE11 ARG12 TRP13 GLU14 ILE15 PRO16 LYS17 PHE18 ASP19 LYS20 ARG21 MET22 ARG23 VAL24 PRO25 GLY26 ARG27 VAL28 TYR29 ALA30 ASP31 GLU32 VAL33 LEU34 LEU35 GLU36 LYS37 MET38 LYS39 ASN40 ASP41 ARG42 THR43 LEU44 GLU45 GLN46 ALA47 THR48 ASN49 VAL50 ALA51 MET52 LEU53 PRO54 GLY55 ILE56 TYR57 LYS58 TYR59 SER60 ILE61 VAL62 MET63 PRO64 ASP65 GLY66 HIS67 GLN68 GLY69 TYR70 GLY71 PHE72 PRO73 ILE74 GLY75 GLY76 VAL77 ALA78 ALA79 PHE80 ASP81 VAL82 LYS83 GLU84 GLY85 VAL86 ILE87 SER88 PRO89 GLY90 GLY91 ILE92 GLY93 TYR94 ASP95 ILE96 ASN97 CYS98 GLY99 VAL100 ARG101 LEU102 ILE103 ARG104 THR105 ASN106 LEU107 THR108 GLU109 LYS110 GLU111 VAL112 ARG113 PRO114 ARG115 ILE116 LYS117 GLN118 LEU119 VAL120 ASP121 THR122 LEU123 PHE124 LYS125 ASN126 VAL127 PRO128 SER129 GLY130 VAL131 GLY132 SER133 GLN134 GLY135 ARG136 ILE137 LYS138 LEU139 HIS140 TRP141 THR142 GLN143 ILE144 ASP145 ASP146 VAL147 LEU148 VAL149 ASP150 GLY151 ALA152 LYS153 TRP154 ALA155 VAL156 ASP157 ASN158 GLY159 TYR160 GLY161 TRP162 GLU163 ARG164 ASP165 LEU166 GLU167 ARG168 LEU169 GLU170 GLU171 GLY172 GLY173 ARG174 MET175 GLU176 GLY177 ALA178 ASP179 PRO180 GLU181 ALA182 VAL183 SER184 GLN185 ARG186 ALA187 LYS188 GLN189 ARG190 GLY191 ALA192 PRO193 GLN194 LEU195 GLY196 SER197 LEU198 GLY199 SER200 GLY201 ASN202 HIS203 PHE204 LEU205 GLU206 VAL207 GLN208 VAL209 VAL210 ASP211 LYS212 ILE213 PHE214 ASP215 PRO216 GLU217 VAL218 ALA219 LYS220 ALA221 TYR222 GLY223 LEU224 PHE225 GLU226 GLY227 GLN228 VAL229 VAL230 VAL231 MET232 VAL233 HIS234 THR235 GLY236 SER237 ARG238 GLY239 LEU240 GLY241 HIS242 GLN243 VAL244 ALA245 SER246 ASP247 TYR248 LEU249 ARG250 ILE251 MET252 GLU253 ARG254 ALA255 ILE256 ARG257 LYS258 TYR259 ARG260 ILE261 PRO262 TRP263 PRO264 ASP265 ARG266 GLU267 LEU268 VAL269 SER270 VAL271 PRO272 PHE273 GLN274 SER275 GLU276 GLU277 GLY278 GLN279 ARG280 TYR281 PHE282 SER283 ALA284 MET285 LYS286 ALA287 ALA288 ALA289 ASN290 PHE291 ALA292 TRP293 ALA294 ASN295 ARG296 GLN297 MET298 ILE299 THR300 HIS301 TRP302 VAL303 ARG304 GLU305 SER306 PHE307 GLN308 GLU309 VAL310 PHE311 LYS312 GLN313 ASP314 PRO315 GLU316 GLY317 ASP318 LEU319 GLY320 MET321 ASP322 ILE323 VAL324 TYR325 ASP326 VAL327 ALA328 HIS329 ASN330 ILE331 GLY332 LYS333 VAL334 GLU335 GLU336 HIS337 GLU338 VAL339 ASP340 GLY341 LYS342 ARG343 VAL344 LYS345 VAL346 ILE347 VAL348 HIS349 ARG350 LYS351 GLY352 ALA353 THR354 ARG355 ALA356 PHE357 PRO358 PRO359 GLY360 HIS361 GLU362 ALA363 VAL364 PRO365 ARG366 LEU367 TYR368 ARG369 ASP370 VAL371 GLY372 GLN373 PRO374 VAL375 LEU376 ILE377 PRO378 GLY379 SER380 MET381 GLY382 THR383 ALA384 SER385 TYR386 ILE387 LEU388 ALA389 GLY390 THR391 GLU392 GLY393 ALA394 MET395 LYS396 GLU397 THR398 PHE399 GLY400 SER401 THR402 CYS403 HIS404 GLY405 ALA406 GLY407 ARG408 VAL409 LEU410 SER411 ARG412 LYS413 ALA414 ALA415 THR416 ARG417 GLN418 TYR419 ARG420 GLY421 ASP422 ARG423 ILE424 ARG425 GLN426 GLU427 LEU428 LEU429 ASN430 ARG431 GLY432 ILE433 TYR434 VAL435 ARG436 ALA437 ALA438 SER439 MET440 ARG441 VAL442 VAL443 ALA444 GLU445 GLU446 ALA447 PRO448 GLY449 ALA450 TYR451 LYS452 ASN453 VAL454 ASP455 ASN456 VAL457 VAL458 LYS459 VAL460 VAL461 SER462 GLU463 ALA464 GLY465 ILE466 ALA467 LYS468 LEU469 VAL470 ALA471 ARG472 MET473 ARG474 PRO475 ILE476 GLY477 VAL478 ALA479 LYS480 GLY481 |
Unit 3 | GLC1 FRU2 |
Unit 4 | GLC1 FRU2 |
Unit 5 | MN501 SO4502 SO4503 SO4504 SO4505 SO4506 SO4507 SO4508 |
Unit 6 | MN501 SO4502 SO4503 SO4504 SO4505 SO4506 SO4507 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |