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Title | CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE 1 FROM ASPERGILLUS ACU COMPLEX WITH CALYSTEGINE B(2) | |
Keywords | TIM BARREL, HYDROLASE, HIGH-MANNOSE N-GLYCOSYLATIONS, EXTRAC | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 4IIE | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | BETA-GLUCOSIDASE 1 | A | 834 | 6387 | 0 |
2 | Protein | BETA-GLUCOSIDASE 1 | B | 832 | 6375 | 0 |
3 | Ligand | C | 4 | 0 | 50 | |
4 | Ligand | D | 3 | 0 | 39 | |
5 | Ligand | E | 2 | 0 | 28 | |
6 | Ligand | F | 10 | 0 | 116 | |
7 | Ligand | G | 3 | 0 | 39 | |
8 | Ligand | H | 7 | 0 | 83 | |
9 | Ligand | I | 7 | 0 | 83 | |
10 | Ligand | J | 7 | 0 | 83 | |
11 | Ligand | K | 6 | 0 | 72 | |
12 | Ligand | L | 3 | 0 | 39 | |
13 | Ligand | M | 10 | 0 | 116 | |
14 | Ligand | N | 3 | 0 | 39 | |
15 | Ligand | O | 7 | 0 | 83 | |
16 | Ligand | P | 8 | 0 | 94 | |
17 | Ligand | BETA-GLUCOSIDASE 1 | A | 7 | 0 | 65 |
18 | Ligand | BETA-GLUCOSIDASE 1 | B | 8 | 0 | 79 |
19 | Water | 1323 | 0 | 1323 | ||
total | 3084 | 12762 | 2431 |
Unit 1 | LEU22 ALA23 PHE24 SER25 PRO26 PRO27 PHE28 TYR29 PRO30 SER31 PRO32 TRP33 ALA34 ASN35 GLY36 GLN37 GLY38 GLU39 TRP40 ALA41 GLU42 ALA43 TYR44 GLN45 ARG46 ALA47 VAL48 ALA49 ILE50 VAL51 SER52 GLN53 MET54 THR55 LEU56 ASP57 GLU58 LYS59 VAL60 ASN61 LEU62 THR63 THR64 GLY65 THR66 GLY67 TRP68 GLU69 LEU70 GLU71 LYS72 CYS73 VAL74 GLY75 GLN76 THR77 GLY78 GLY79 VAL80 PRO81 ARG82 LEU83 ASN84 ILE85 GLY86 GLY87 MET88 CYS89 LEU90 GLN91 ASP92 SER93 PRO94 LEU95 GLY96 ILE97 ARG98 ASP99 SER100 ASP101 TYR102 ASN103 SER104 ALA105 PHE106 PRO107 ALA108 GLY109 VAL110 ASN111 VAL112 ALA113 ALA114 THR115 TRP116 ASP117 LYS118 ASN119 LEU120 ALA121 TYR122 LEU123 ARG124 GLY125 GLN126 ALA127 MET128 GLY129 GLN130 GLU131 PHE132 SER133 ASP134 LYS135 GLY136 ILE137 ASP138 VAL139 GLN140 LEU141 GLY142 PRO143 ALA144 ALA145 GLY146 PRO147 LEU148 GLY149 ARG150 SER151 PRO152 ASP153 GLY154 GLY155 ARG156 ASN157 TRP158 GLU159 GLY160 PHE161 SER162 PRO163 ASP164 PRO165 ALA166 LEU167 THR168 GLY169 VAL170 LEU171 PHE172 ALA173 GLU174 THR175 ILE176 LYS177 GLY178 ILE179 GLN180 ASP181 ALA182 GLY183 VAL184 VAL185 ALA186 THR187 ALA188 LYS189 HIS190 TYR191 ILE192 LEU193 ASN194 GLU195 GLN196 GLU197 HIS198 PHE199 ARG200 GLN201 VAL202 ALA203 GLU204 ALA205 ALA206 GLY207 TYR208 GLY209 PHE210 ASN211 ILE212 SER213 ASP214 THR215 ILE216 SER217 SER218 ASN219 VAL220 ASP221 ASP222 LYS223 THR224 ILE225 HIS226 GLU227 MET228 TYR229 LEU230 TRP231 PRO232 PHE233 ALA234 ASP235 ALA236 VAL237 ARG238 ALA239 GLY240 VAL241 GLY242 ALA243 ILE244 MET245 CYS246 SER247 TYR248 ASN249 GLN250 ILE251 ASN252 ASN253 SER254 TYR255 GLY256 CYS257 GLN258 ASN259 SER260 TYR261 THR262 LEU263 ASN264 LYS265 LEU266 LEU267 LYS268 ALA269 GLU270 LEU271 GLY272 PHE273 GLN274 GLY275 PHE276 VAL277 MET278 SER279 ASP280 TRP281 GLY282 ALA283 HIS284 HIS285 SER286 GLY287 VAL288 GLY289 SER290 ALA291 LEU292 ALA293 GLY294 LEU295 ASP296 MET297 SER298 MET299 PRO300 GLY301 ASP302 ILE303 THR304 PHE305 ASP306 SER307 ALA308 THR309 SER310 PHE311 TRP312 GLY313 THR314 ASN315 LEU316 THR317 ILE318 ALA319 VAL320 LEU321 ASN322 GLY323 THR324 VAL325 PRO326 GLN327 TRP328 ARG329 VAL330 ASP331 ASP332 MET333 ALA334 VAL335 ARG336 ILE337 MET338 ALA339 ALA340 TYR341 TYR342 LYS343 VAL344 GLY345 ARG346 ASP347 ARG348 LEU349 TYR350 GLN351 PRO352 PRO353 ASN354 PHE355 SER356 SER357 TRP358 THR359 ARG360 ASP361 GLU362 TYR363 GLY364 PHE365 LYS366 TYR367 PHE368 TYR369 PRO370 GLN371 GLU372 GLY373 PRO374 TYR375 GLU376 LYS377 VAL378 ASN379 HIS380 PHE381 VAL382 ASN383 VAL384 GLN385 ARG386 ASN387 HIS388 SER389 GLU390 VAL391 ILE392 ARG393 LYS394 LEU395 GLY396 ALA397 ASP398 SER399 THR400 VAL401 LEU402 LEU403 LYS404 ASN405 ASN406 ASN407 ALA408 LEU409 PRO410 LEU411 THR412 GLY413 LYS414 GLU415 ARG416 LYS417 VAL418 ALA419 ILE420 LEU421 GLY422 GLU423 ASP424 ALA425 GLY426 SER427 ASN428 SER429 TYR430 GLY431 ALA432 ASN433 GLY434 CYS435 SER436 ASP437 ARG438 GLY439 CYS440 ASP441 ASN442 GLY443 THR444 LEU445 ALA446 MET447 ALA448 TRP449 GLY450 SER451 GLY452 THR453 ALA454 GLU455 PHE456 PRO457 TYR458 LEU459 VAL460 THR461 PRO462 GLU463 GLN464 ALA465 ILE466 GLN467 ALA468 GLU469 VAL470 LEU471 LYS472 HIS473 LYS474 GLY475 SER476 VAL477 TYR478 ALA479 ILE480 THR481 ASP482 ASN483 TRP484 ALA485 LEU486 SER487 GLN488 VAL489 GLU490 THR491 LEU492 ALA493 LYS494 GLN495 ALA496 SER497 VAL498 SER499 LEU500 VAL501 PHE502 VAL503 ASN504 SER505 ASP506 ALA507 GLY508 GLU509 GLY510 TYR511 ILE512 SER513 VAL514 ASP515 GLY516 ASN517 GLU518 GLY519 ASP520 ARG521 ASN522 ASN523 LEU524 THR525 LEU526 TRP527 LYS528 ASN529 GLY530 ASP531 ASN532 LEU533 ILE534 LYS535 ALA536 ALA537 ALA538 ASN539 ASN540 CYS541 ASN542 ASN543 THR544 ILE545 VAL546 VAL547 ILE548 HIS549 SER550 VAL551 GLY552 PRO553 VAL554 LEU555 VAL556 ASP557 GLU558 TRP559 TYR560 ASP561 HIS562 PRO563 ASN564 VAL565 THR566 ALA567 ILE568 LEU569 TRP570 ALA571 GLY572 LEU573 PRO574 GLY575 GLN576 GLU577 SER578 GLY579 ASN580 SER581 LEU582 ALA583 ASP584 VAL585 LEU586 TYR587 GLY588 ARG589 VAL590 ASN591 PRO592 GLY593 ALA594 LYS595 SER596 PRO597 PHE598 THR599 TRP600 GLY601 LYS602 THR603 ARG604 GLU605 ALA606 TYR607 GLY608 ASP609 TYR610 LEU611 VAL612 ARG613 GLU614 LEU615 ASN616 ASN617 GLY618 ASN619 GLY620 ALA621 PRO622 GLN623 ASP624 ASP625 PHE626 SER627 GLU628 GLY629 VAL630 PHE631 ILE632 ASP633 TYR634 ARG635 GLY636 PHE637 ASP638 LYS639 ARG640 ASN641 GLU642 THR643 PRO644 ILE645 TYR646 GLU647 PHE648 GLY649 HIS650 GLY651 LEU652 SER653 TYR654 THR655 THR656 PHE657 ASN658 TYR659 SER660 GLY661 LEU662 HIS663 ILE664 GLN665 VAL666 LEU667 ASN668 ALA669 VAL675 ALA676 THR677 GLU678 THR679 GLY680 ALA681 ALA682 PRO683 THR684 PHE685 GLY686 GLN687 VAL688 GLY689 ASN690 ALA691 SER692 ASP693 TYR694 VAL695 TYR696 PRO697 GLU698 GLY699 LEU700 THR701 ARG702 ILE703 SER704 LYS705 PHE706 ILE707 TYR708 PRO709 TRP710 LEU711 ASN712 SER713 THR714 ASP715 LEU716 LYS717 ALA718 SER719 SER720 GLY721 ASP722 PRO723 TYR724 TYR725 GLY726 VAL727 ASP728 THR729 ALA730 GLU731 HIS732 VAL733 PRO734 GLU735 GLY736 ALA737 THR738 ASP739 GLY740 SER741 PRO742 GLN743 PRO744 VAL745 LEU746 PRO747 ALA748 GLY749 GLY750 GLY751 SER752 GLY753 GLY754 ASN755 PRO756 ARG757 LEU758 TYR759 ASP760 GLU761 LEU762 ILE763 ARG764 VAL765 SER766 VAL767 THR768 VAL769 LYS770 ASN771 THR772 GLY773 ARG774 VAL775 ALA776 GLY777 ASP778 ALA779 VAL780 PRO781 GLN782 LEU783 TYR784 VAL785 SER786 LEU787 GLY788 GLY789 PRO790 ASN791 GLU792 PRO793 LYS794 VAL795 VAL796 LEU797 ARG798 LYS799 PHE800 ASP801 ARG802 LEU803 THR804 LEU805 LYS806 PRO807 SER808 GLU809 GLU810 THR811 VAL812 TRP813 THR814 THR815 THR816 LEU817 THR818 ARG819 ARG820 ASP821 LEU822 SER823 ASN824 TRP825 ASP826 VAL827 ALA828 ALA829 GLN830 ASP831 TRP832 VAL833 ILE834 THR835 SER836 TYR837 PRO838 LYS839 LYS840 VAL841 HIS842 VAL843 GLY844 SER845 SER846 SER847 ARG848 GLN849 LEU850 PRO851 LEU852 HIS853 ALA854 ALA855 LEU856 PRO857 LYS858 VAL859 GLN860 |
Unit 2 | LEU22 ALA23 PHE24 SER25 PRO26 PRO27 PHE28 TYR29 PRO30 SER31 PRO32 TRP33 ALA34 ASN35 GLY36 GLN37 GLY38 GLU39 TRP40 ALA41 GLU42 ALA43 TYR44 GLN45 ARG46 ALA47 VAL48 ALA49 ILE50 VAL51 SER52 GLN53 MET54 THR55 LEU56 ASP57 GLU58 LYS59 VAL60 ASN61 LEU62 THR63 THR64 GLY65 THR66 GLY67 TRP68 GLU69 LEU70 GLU71 LYS72 CYS73 VAL74 GLY75 GLN76 THR77 GLY78 GLY79 VAL80 PRO81 ARG82 LEU83 ASN84 ILE85 GLY86 GLY87 MET88 CYS89 LEU90 GLN91 ASP92 SER93 PRO94 LEU95 GLY96 ILE97 ARG98 ASP99 SER100 ASP101 TYR102 ASN103 SER104 ALA105 PHE106 PRO107 ALA108 GLY109 VAL110 ASN111 VAL112 ALA113 ALA114 THR115 TRP116 ASP117 LYS118 ASN119 LEU120 ALA121 TYR122 LEU123 ARG124 GLY125 GLN126 ALA127 MET128 GLY129 GLN130 GLU131 PHE132 SER133 ASP134 LYS135 GLY136 ILE137 ASP138 VAL139 GLN140 LEU141 GLY142 PRO143 ALA144 ALA145 GLY146 PRO147 LEU148 GLY149 ARG150 SER151 PRO152 ASP153 GLY154 GLY155 ARG156 ASN157 TRP158 GLU159 GLY160 PHE161 SER162 PRO163 ASP164 PRO165 ALA166 LEU167 THR168 GLY169 VAL170 LEU171 PHE172 ALA173 GLU174 THR175 ILE176 LYS177 GLY178 ILE179 GLN180 ASP181 ALA182 GLY183 VAL184 VAL185 ALA186 THR187 ALA188 LYS189 HIS190 TYR191 ILE192 LEU193 ASN194 GLU195 GLN196 GLU197 HIS198 PHE199 ARG200 GLN201 VAL202 ALA203 GLU204 ALA205 ALA206 GLY207 TYR208 GLY209 PHE210 ASN211 ILE212 SER213 ASP214 THR215 ILE216 SER217 SER218 ASN219 VAL220 ASP221 ASP222 LYS223 THR224 ILE225 HIS226 GLU227 MET228 TYR229 LEU230 TRP231 PRO232 PHE233 ALA234 ASP235 ALA236 VAL237 ARG238 ALA239 GLY240 VAL241 GLY242 ALA243 ILE244 MET245 CYS246 SER247 TYR248 ASN249 GLN250 ILE251 ASN252 ASN253 SER254 TYR255 GLY256 CYS257 GLN258 ASN259 SER260 TYR261 THR262 LEU263 ASN264 LYS265 LEU266 LEU267 LYS268 ALA269 GLU270 LEU271 GLY272 PHE273 GLN274 GLY275 PHE276 VAL277 MET278 SER279 ASP280 TRP281 GLY282 ALA283 HIS284 HIS285 SER286 GLY287 VAL288 GLY289 SER290 ALA291 LEU292 ALA293 GLY294 LEU295 ASP296 MET297 SER298 MET299 PRO300 GLY301 ASP302 ILE303 THR304 PHE305 ASP306 SER307 ALA308 THR309 SER310 PHE311 TRP312 GLY313 THR314 ASN315 LEU316 THR317 ILE318 ALA319 VAL320 LEU321 ASN322 GLY323 THR324 VAL325 PRO326 GLN327 TRP328 ARG329 VAL330 ASP331 ASP332 MET333 ALA334 VAL335 ARG336 ILE337 MET338 ALA339 ALA340 TYR341 TYR342 LYS343 VAL344 GLY345 ARG346 ASP347 ARG348 LEU349 TYR350 GLN351 PRO352 PRO353 ASN354 PHE355 SER356 SER357 TRP358 THR359 ARG360 ASP361 GLU362 TYR363 GLY364 PHE365 LYS366 TYR367 PHE368 TYR369 PRO370 GLN371 GLU372 GLY373 PRO374 TYR375 GLU376 LYS377 VAL378 ASN379 HIS380 PHE381 VAL382 ASN383 VAL384 GLN385 ARG386 ASN387 HIS388 SER389 GLU390 VAL391 ILE392 ARG393 LYS394 LEU395 GLY396 ALA397 ASP398 SER399 THR400 VAL401 LEU402 LEU403 LYS404 ASN405 ASN406 ASN407 ALA408 LEU409 PRO410 LEU411 THR412 GLY413 LYS414 GLU415 ARG416 LYS417 VAL418 ALA419 ILE420 LEU421 GLY422 GLU423 ASP424 ALA425 GLY426 SER427 ASN428 SER429 TYR430 GLY431 ALA432 ASN433 GLY434 CYS435 SER436 ASP437 ARG438 GLY439 CYS440 ASP441 ASN442 GLY443 THR444 LEU445 ALA446 MET447 ALA448 TRP449 GLY450 SER451 GLY452 THR453 ALA454 GLU455 PHE456 PRO457 TYR458 LEU459 VAL460 THR461 PRO462 GLU463 GLN464 ALA465 ILE466 GLN467 ALA468 GLU469 VAL470 LEU471 LYS472 HIS473 LYS474 GLY475 SER476 VAL477 TYR478 ALA479 ILE480 THR481 ASP482 ASN483 TRP484 ALA485 LEU486 SER487 GLN488 VAL489 GLU490 THR491 LEU492 ALA493 LYS494 GLN495 ALA496 SER497 VAL498 SER499 LEU500 VAL501 PHE502 VAL503 ASN504 SER505 ASP506 ALA507 GLY508 GLU509 GLY510 TYR511 ILE512 SER513 VAL514 ASP515 GLY516 ASN517 GLU518 GLY519 ASP520 ARG521 ASN522 ASN523 LEU524 THR525 LEU526 TRP527 LYS528 ASN529 GLY530 ASP531 ASN532 LEU533 ILE534 LYS535 ALA536 ALA537 ALA538 ASN539 ASN540 CYS541 ASN542 ASN543 THR544 ILE545 VAL546 VAL547 ILE548 HIS549 SER550 VAL551 GLY552 PRO553 VAL554 LEU555 VAL556 ASP557 GLU558 TRP559 TYR560 ASP561 HIS562 PRO563 ASN564 VAL565 THR566 ALA567 ILE568 LEU569 TRP570 ALA571 GLY572 LEU573 PRO574 GLY575 GLN576 GLU577 SER578 GLY579 ASN580 SER581 LEU582 ALA583 ASP584 VAL585 LEU586 TYR587 GLY588 ARG589 VAL590 ASN591 PRO592 GLY593 ALA594 LYS595 SER596 PRO597 PHE598 THR599 TRP600 GLY601 LYS602 THR603 ARG604 GLU605 ALA606 TYR607 GLY608 ASP609 TYR610 LEU611 VAL612 ARG613 GLU614 LEU615 ASN616 ASN617 GLY618 ASN619 GLY620 ALA621 PRO622 GLN623 ASP624 ASP625 PHE626 SER627 GLU628 GLY629 VAL630 PHE631 ILE632 ASP633 TYR634 ARG635 GLY636 PHE637 ASP638 LYS639 ARG640 ASN641 GLU642 THR643 PRO644 ILE645 TYR646 GLU647 PHE648 GLY649 HIS650 GLY651 LEU652 SER653 TYR654 THR655 THR656 PHE657 ASN658 TYR659 SER660 GLY661 LEU662 HIS663 ILE664 GLN665 VAL666 LEU667 ASN668 ALA676 THR677 GLU678 THR679 GLY680 ALA681 ALA682 PRO683 THR684 PHE685 GLY686 GLN687 VAL688 GLY689 ASN690 ALA691 SER692 ASP693 TYR694 VAL695 TYR696 PRO697 GLU698 GLY699 LEU700 THR701 ARG702 ILE703 SER704 LYS705 PHE706 ILE707 TYR708 PRO709 TRP710 LEU711 ASN712 SER713 THR714 ASP715 LEU716 LYS717 ALA718 SER719 SER720 GLY721 ASP722 PRO723 TYR724 TYR725 GLY726 VAL727 ASP728 THR729 ALA730 GLU731 HIS732 VAL733 PRO734 GLU735 GLY736 ALA737 THR738 ASP739 GLY740 SER741 PRO742 GLN743 PRO744 VAL745 LEU746 PRO747 ALA748 GLY749 GLY750 GLY751 SER752 GLY753 GLY754 ASN755 PRO756 ARG757 LEU758 TYR759 ASP760 GLU761 LEU762 ILE763 ARG764 VAL765 SER766 VAL767 THR768 VAL769 LYS770 ASN771 THR772 GLY773 ARG774 VAL775 ALA776 GLY777 ASP778 ALA779 VAL780 PRO781 GLN782 LEU783 TYR784 VAL785 SER786 LEU787 GLY788 GLY789 PRO790 ASN791 GLU792 PRO793 LYS794 VAL795 VAL796 LEU797 ARG798 LYS799 PHE800 ASP801 ARG802 LEU803 THR804 LEU805 LYS806 PRO807 SER808 GLU809 GLU810 THR811 VAL812 TRP813 THR814 THR815 THR816 LEU817 THR818 ARG819 ARG820 ASP821 LEU822 SER823 ASN824 TRP825 ASP826 VAL827 ALA828 ALA829 GLN830 ASP831 TRP832 VAL833 ILE834 THR835 SER836 TYR837 PRO838 LYS839 LYS840 VAL841 HIS842 VAL843 GLY844 SER845 SER846 SER847 ARG848 GLN849 LEU850 PRO851 LEU852 HIS853 ALA854 ALA855 LEU856 PRO857 LYS858 VAL859 GLN860 |
Unit 3 | NAG1 NAG2 BMA3 MAN4 |
Unit 4 | NAG1 NAG2 BMA3 |
Unit 5 | NAG1 NAG2 |
Unit 6 | NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7 MAN8 MAN9 MAN10 |
Unit 7 | NAG1 NAG2 BMA3 |
Unit 8 | NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7 |
Unit 9 | NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7 |
Unit 10 | NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7 |
Unit 11 | NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 |
Unit 12 | NAG1 NAG2 BMA3 |
Unit 13 | NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7 MAN8 MAN9 MAN10 |
Unit 14 | NAG1 NAG2 BMA3 |
Unit 15 | NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7 |
Unit 16 | NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7 MAN8 |
Unit 17 | NAG905 NAG938 MRD939 MRD940 MRD941 NA942 CGB943 |
Unit 18 | NAG908 NAG946 NAG947 MRD948 MRD949 MRD950 NA951 CGB952 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |