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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF WEISSELLA VIRIDESCENS FEMXVV NON-RIBOSO ACID TRANSFERASE IN COMPLEX WITH A PEPTIDYL-RNA CONJUGATE
Keywords FEMX, PEPTIDOGLYCAN, TRANSFERASE, PEPTIDYL-RNA CONJUGATE COM TRANSFERASE-PEPTIDE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4II9     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   FEMX  A 337 2696 0
2  Protein   5-MER PEPTIDE  B 5 11 20
3  RNA    C 3 40 28
4  Ligand   FEMX  A 1 0 6
5  Ligand   5-MER PEPTIDE  B 2 0 43
6 Water     296 0 296
total       644 2747 393

Proteins
Unit 1 PRO1 VAL2 LEU3 ASN4 LEU5 ASN6 ASP7 PRO8 GLN9 ALA10 VAL11 GLU12 ARG13 TYR14 GLU15 GLU16 PHE17 MET18 ARG19 GLN20 SER21 PRO22 TYR23 GLY24 GLN25 VAL26 THR27 GLN28 ASP29 LEU30 GLY31 TRP32 ALA33 LYS34 VAL35 LYS36 ASN37 ASN38 TRP39 GLU40 PRO41 VAL42 ASP43 VAL44 TYR45 LEU46 GLU47 ASP48 ASP49 GLN50 GLY51 ALA52 ILE53 ILE54 ALA55 ALA56 MET57 SER58 MET59 LEU60 LEU61 GLY62 ASP63 THR64 PRO65 THR66 ASP67 LYS68 LYS69 PHE70 ALA71 TYR72 ALA73 SER74 LYS75 GLY76 PRO77 VAL78 MET79 ASP80 VAL81 THR82 ASP83 VAL84 ASP85 LEU86 LEU87 ASP88 ARG89 LEU90 VAL91 ASP92 GLU93 ALA94 VAL95 LYS96 ALA97 LEU98 ASP99 GLY100 ARG101 ALA102 TYR103 VAL104 LEU105 ARG106 PHE107 ASP108 PRO109 GLU110 VAL111 ALA112 TYR113 SER114 ASP115 GLU116 PHE117 ASN118 THR119 THR120 LEU121 GLN122 ASP123 HIS124 GLY125 TYR126 VAL127 THR128 ARG129 ASN130 ARG131 ASN132 VAL133 ALA134 ASP135 ALA136 GLY137 MET138 HIS139 ALA140 THR141 ILE142 GLN143 PRO144 ARG145 LEU146 ASN147 MET148 VAL149 LEU150 ASP151 LEU152 THR153 LYS154 PHE155 PRO156 ASP157 ALA158 LYS159 THR160 THR161 LEU162 ASP163 LEU164 TYR165 PRO166 SER167 LYS168 THR169 LYS170 SER171 LYS172 ILE173 LYS174 ARG175 PRO176 PHE177 ARG178 ASP179 GLY180 VAL181 GLU182 VAL183 HIS184 SER185 GLY186 ASN187 SER188 ALA189 THR190 GLU191 LEU192 ASP193 GLU194 PHE195 PHE196 LYS197 THR198 TYR199 THR200 THR201 MET202 ALA203 GLU204 ARG205 HIS206 GLY207 ILE208 THR209 HIS210 ARG211 PRO212 ILE213 GLU214 TYR215 PHE216 GLN217 ARG218 MET219 GLN220 ALA221 ALA222 PHE223 ASP224 ALA225 ASP226 THR227 MET228 ARG229 ILE230 PHE231 VAL232 ALA233 GLU234 ARG235 GLU236 GLY237 LYS238 LEU239 LEU240 SER241 THR242 GLY243 ILE244 ALA245 LEU246 LYS247 TYR248 GLY249 ARG250 LYS251 ILE252 TRP253 TYR254 MET255 TYR256 ALA257 GLY258 SER259 MET260 ASP261 GLY262 ASN263 THR264 TYR265 TYR266 ALA267 PRO268 TYR269 ALA270 VAL271 GLN272 SER273 GLU274 MET275 ILE276 GLN277 TRP278 ALA279 LEU280 ASP281 THR282 ASN283 THR284 ASP285 LEU286 TYR287 ASP288 LEU289 GLY290 GLY291 ILE292 GLU293 SER294 GLU295 SER296 THR297 ASP298 ASP299 SER300 LEU301 TYR302 VAL303 PHE304 LYS305 HIS306 VAL307 PHE308 VAL309 LYS310 ASP311 ALA312 PRO313 ARG314 GLU315 TYR316 ILE317 GLY318 GLU319 ILE320 ASP321 LYS322 VAL323 LEU324 ASP325 PRO326 GLU327 VAL328 TYR329 ALA330 GLU331 LEU332 VAL333 LYS334 ASP335 GLY336 HIS337
Unit 2 ALA3 FGA4 CYS5 DAL6 DAL7

Nucleic acids
Unit 3 C8 C9 A9Z10

Ligands
Unit 4 GOL402
Unit 5 UDP101 MUB102

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany