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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL BASIS FOR CYTOSOLIC DOUBLE-STRANDED RNA SURVEILLA HUMAN OAS1
Keywords NUCLEOTIDYL TRANSFERASE, INNATE IMMUNE SYSTEM DOUBLE-STRANDE SENSOR RNA POLYMERASE, NUCLEOTIDYL TRANSFERASE 2-5A SYNTHET RNASE L ACTIVATOR, DOUBLE-STRANDED RNA, CYTOSOL, TRANSFERAS COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4IG8     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   2'-5'-OLIGOADENYLATE SYNTHASE 1  A 338 2741 0
2  RNA    B 18 373 0
3  RNA    C 18 385 0
4  Ligand   2'-5'-OLIGOADENYLATE SYNTHASE 1  A 3 0 32
5 Water     50 0 50
total       427 3499 82

Proteins
Unit 1 ASP3 LEU4 ARG5 ASN6 THR7 PRO8 ALA9 LYS10 SER11 LEU12 ASP13 LYS14 PHE15 ILE16 GLU17 ASP18 TYR19 LEU20 LEU21 PRO22 ASP23 THR24 CYS25 PHE26 ARG27 MET28 GLN29 ILE30 ASN31 HIS32 ALA33 ILE34 ASP35 ILE36 ILE37 CYS38 GLY39 PHE40 LEU41 LYS42 GLU43 ARG44 CYS45 PHE46 ARG47 GLY48 SER49 SER50 TYR51 PRO52 VAL53 CYS54 VAL55 SER56 LYS57 VAL58 VAL59 LYS60 GLY61 GLY62 SER63 SER64 GLY65 LYS66 GLY67 THR68 THR69 LEU70 ARG71 GLY72 ARG73 SER74 ASP75 ALA76 ASP77 LEU78 VAL79 VAL80 PHE81 LEU82 SER83 PRO84 LEU85 THR86 THR87 PHE88 GLN89 ASP90 GLN91 LEU92 ASN93 ARG94 ARG95 GLY96 GLU97 PHE98 ILE99 GLN100 GLU101 ILE102 ARG103 ARG104 GLN105 LEU106 GLU107 ALA108 CYS109 GLN110 ARG111 GLU112 ARG113 ALA114 PHE115 SER116 VAL117 LYS118 PHE119 GLU120 GLY127 ASN128 PRO129 ARG130 ALA131 LEU132 SER133 PHE134 VAL135 LEU136 SER137 SER138 LEU139 GLN140 LEU141 GLY142 GLU143 GLY144 VAL145 GLU146 PHE147 ASP148 VAL149 LEU150 PRO151 ALA152 PHE153 ASP154 ALA155 LEU156 GLY157 GLN158 LEU159 THR160 GLY161 GLY162 TYR163 LYS164 PRO165 ASN166 PRO167 GLN168 ILE169 TYR170 VAL171 LYS172 LEU173 ILE174 GLU175 GLU176 CYS177 THR178 ASP179 LEU180 GLN181 LYS182 GLU183 GLY184 GLU185 PHE186 SER187 THR188 CYS189 PHE190 THR191 GLU192 LEU193 GLN194 ARG195 ASP196 PHE197 LEU198 LYS199 GLN200 ARG201 PRO202 THR203 LYS204 LEU205 LYS206 SER207 LEU208 ILE209 ARG210 LEU211 VAL212 LYS213 HIS214 TRP215 TYR216 GLN217 ASN218 CYS219 LYS220 LYS221 LYS222 LEU223 GLY224 LYS225 LEU226 PRO227 PRO228 GLN229 TYR230 ALA231 LEU232 GLU233 LEU234 LEU235 THR236 VAL237 TYR238 ALA239 TRP240 GLU241 ARG242 GLY243 SER244 MET245 LYS246 THR247 HIS248 PHE249 ASN250 THR251 ALA252 GLN253 GLY254 PHE255 ARG256 THR257 VAL258 LEU259 GLU260 LEU261 VAL262 ILE263 ASN264 TYR265 GLN266 GLN267 LEU268 CYS269 ILE270 TYR271 TRP272 THR273 LYS274 TYR275 TYR276 ASP277 PHE278 LYS279 ASN280 PRO281 ILE282 ILE283 GLU284 LYS285 TYR286 LEU287 ARG288 ARG289 GLN290 LEU291 THR292 LYS293 PRO294 ARG295 PRO296 VAL297 ILE298 LEU299 ASP300 PRO301 ALA302 ASP303 PRO304 THR305 GLY306 ASN307 LEU308 GLY309 GLY310 GLY311 ASP312 PRO313 LYS314 GLY315 TRP316 ARG317 GLN318 LEU319 ALA320 GLN321 GLU322 ALA323 GLU324 ALA325 TRP326 LEU327 ASN328 TYR329 PRO330 CYS331 PHE332 LYS333 ASN334 TRP335 ASP336 GLY337 SER338 PRO339 VAL340 SER341 SER342 TRP343 ILE344 LEU345 LEU346

Nucleic acids
Unit 2 G1 G2 C3 U4 U5 U6 U7 G8 A9 C10 C11 U12 U13 U14 A15 U16 G17 C18
Unit 3 G1 C2 A3 U4 A5 A6 A7 G8 G9 U10 C11 A12 A13 A14 A15 G16 C17 C18

Ligands
Unit 4 MG401 MG402 DTP403

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany